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Elucidation of the oligomerization mechanism of pore forming protein

Research Project

Project/Area Number 23780107
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied biochemistry
Research InstitutionNagasaki University

Principal Investigator

GODA Shuichiro  長崎大学, 大学院・工学研究科, 准教授 (00346587)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsタンパク質工学 / 蛋白質 / タンパク質 / 生体分子 / 糖鎖
Research Abstract

Pore forming proteins form oligomer on the surface of the cell. Then, they form an ion permiable pore to disrupt the cells. In this reseach, structural changes in oligomerization and oligomeric stucture of the pore forming proteins were measured by small-angle X-ray scattering (SAXS) and crystal X-ray diffraction. A hemolytic lectin from marine invertebrate Cucumaria echinata (CEL-III) forms heptamer at first then three heptamers form 21-mer and 21-mer dissociated to heptamer in the presence of detergent by the results of SAXS measurements. CEL-III oligomer was crystallized and X-ray diffraction data were collected. Crystals diffracted X-rays to 3.3 and 4.2 A resolution using synchrotron radiation.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (39 results)

All 2013 2012 2011 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (29 results)

  • [Journal Article] Crystallization and preliminary crystallographic study of oligomers of the haemolytic lectin CEL-III from the sea cucumber Cucumaria echinata2013

    • Author(s)
      Hideaki Unno, Keigo Hisamatsu, Tomonao Nagao, Yuki Tateya, Naoki Matsumoto, Shuichiro Goda, and Tomomitsu Hatakeyama
    • Journal Title

      Acta Crystallographica Section F

      Volume: F69 Issue: 4 Pages: 416-420

    • DOI

      10.1107/s1744309113004065

    • NAID

      120006985934

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Detergents on the Oligomeric Structures of Hemolytic Lectin CEL-III as Determined by Small-Angle X-Ray Scattering2013

    • Author(s)
      Shuichiro Goda, Hitoshi Sadakata, Hideaki Unno, and Tomomitsu Hatakeyama
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 77 Issue: 3 Pages: 679-681

    • DOI

      10.1271/bbb.120981

    • NAID

      10031164799

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Alteration of the Carbohydrate-Binding Specificity of a C-type Lectin CEL-I Mutant with an EPN Carbohydrate-Binding Motif2013

    • Author(s)
      Tomomitsu Hatakeyama
    • Journal Title

      Protein and Peptide Letters

      Volume: in printing

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Assay for Carbohydrate-Binding Activity of Lectins Using Polyamidoamine Dendrimer Conjugated with Carbohydrates2012

    • Author(s)
      Tomomitsu Hatakeyama, Ryota Karino, Yasuaki Terai, Masanari Kimura, Hideaki Unno, Shuichiro Goda
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 76 Issue: 10 Pages: 1999-2001

    • DOI

      10.1271/bbb.120520

    • NAID

      130004054025

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural and thermodynamic characterization of the self-adhesive properties of human P-cadherin.2012

    • Author(s)
      Kudo S
    • Journal Title

      Mol Biosyst.

      Volume: Aug;8(8) Issue: 8 Pages: 2050-2053

    • DOI

      10.1039/c2mb25161b

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Substrate-induced change in the quaternary structure of type 2 isopentenyl diphosphate isomerase from Sulfolobus shibatae2012

    • Author(s)
      Nakatani, H.
    • Journal Title

      J.Bacteriol.

      Volume: 194(in press) Issue: 12 Pages: 3216-3224

    • DOI

      10.1128/jb.00068-12

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] An assay for Carbohydrate-Binding Activity of Lectins using Polyamidoamine Dendrimer Conjugated with Carbohydrates2012

    • Author(s)
      Tomomitsu Hatakeyama
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 76 Pages: 1999-2001

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural modeling of RNase P RNA of the hyperthermophilic archaeon Pyrococcus horikoshii OT32011

    • Author(s)
      Christian Zwieb, Yuji Nakao, Takashi Nakashima, Hisanori Takagi, Shuichiro Goda, Ebbe S Andersen, Yoshimitsu Kakuta, Makoto Kimura
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: 414 Issue: 3 Pages: 517-522

    • DOI

      10.1016/j.bbrc.2011.09.098

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural modeling of RNase P RNA of the hyper2011

    • Author(s)
      Christian Zwieb
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 414 Pages: 517-522

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Alteration of the Carbohydrate-Binding Specificity of a C-type Lectin CEL-I Mutant with an EPN Carbohydrate-Binding Motif

    • Author(s)
      Tomomitsu Hatakeyama, Tomohiro Ishimine, Tomohiro Baba, Masanari Kimura, Hideaki Unno, and Shuichiro Goda
    • Journal Title

      Protein and Peptide Letters in press

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] 棘皮動物グミ由来溶血性レクチンCEL-IIIの細胞膜貫通オリゴマー構造2013

    • Author(s)
      畠山智充
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      東北大学川内北キャンパス
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] 溶血性レクチンCEL-IIIオリゴマーの結晶構造解析2012

    • Author(s)
      畠山 智充
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場、マリンメッセ福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] サンゴ由来溶血性レクチン相同性タンパク質の糖認識の解明2012

    • Author(s)
      工藤 彰洋
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場、マリンメッセ福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] Analysis of the structural change of the pore forming toxin by stopped-flow small-angle X-ray scattering2012

    • Author(s)
      Shuichiro Goda
    • Organizer
      3rd International Workshop on Expression, Structure and Function of Membrane Proteins
    • Place of Presentation
      University of Florence Florence イタリア
    • Related Report
      2012 Final Research Report
  • [Presentation] Crystallization of the pore forming toxin CEL-III from marine invertebrate, Cucumaria echinata2012

    • Author(s)
      Tomonao Nagao
    • Organizer
      3rd International Workshop on Expression, Structure and Function of Membrane Proteins
    • Place of Presentation
      University of Florence Florence イタリア
    • Related Report
      2012 Final Research Report
  • [Presentation] 溶血性レクチンCEL-IIIの膜孔形成複合体結晶構造解析2012

    • Author(s)
      海野英昭
    • Organizer
      第36回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      フェニックスシーガイアリゾートサンホテルフェニックス"
    • Related Report
      2012 Final Research Report
  • [Presentation] サンゴ由来レクチン相同性タンパク質の糖特異性の解明2012

    • Author(s)
      工藤彰洋
    • Organizer
      第36回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      フェニックスシーガイアリゾートサンホテルフェニックス
    • Related Report
      2012 Final Research Report
  • [Presentation] 溶血性レクチンCEL-IIIの多量体化機構のX線小角散乱測定による解明2012

    • Author(s)
      郷田秀一郎
    • Organizer
      第29回PFシンポジウム
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2012 Final Research Report
  • [Presentation] Analysis of the structural change of the pore forming toxin by stopped-flow small-angle X-ray scattering2012

    • Author(s)
      Shuichiro Goda
    • Organizer
      3rd International Workshop on Expression, Structure and Function of Membrane Proteins
    • Place of Presentation
      University of Florence
    • Related Report
      2012 Annual Research Report
  • [Presentation] Crystallization of the pore forming toxin CEL-III from marine invertebrate, Cucumaria echinata2012

    • Author(s)
      Tomonao Nagao
    • Organizer
      3rd International Workshop on Expression, Structure and Function of Membrane Proteins
    • Place of Presentation
      University of Florence
    • Related Report
      2012 Annual Research Report
  • [Presentation] 溶血性レクチンCEL-IIIオリゴマーの結晶構造解析

    • Author(s)
      畠山智充
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] サンゴ由来溶血性レクチン相同性タンパク質の糖認識の解明

    • Author(s)
      工藤彰洋
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] サンゴ由来レクチン相同性タンパク質の糖特異性の解明

    • Author(s)
      工藤彰洋
    • Organizer
      第36回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      フェニックスシーガイアリゾート
    • Related Report
      2012 Annual Research Report
  • [Presentation] 溶血性レクチンCEL-IIIの膜孔形成複合体結晶構造解析

    • Author(s)
      海野英昭
    • Organizer
      第36回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      フェニックスシーガイアリゾート
    • Related Report
      2012 Annual Research Report
  • [Presentation] 好熱性アーキア由来タイプ2イソペンテニル二リン酸イソメラーゼの四次構造に対する基質結合の影響

    • Author(s)
      中谷仁美
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] イトマキヒトデレクチンおよびその変異体の糖結合活性測定

    • Author(s)
      畠山智充
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] 溶血性レクチンCEL-IIIの多量体化機構のX線小角散乱測定による解明

    • Author(s)
      郷田秀一郎
    • Organizer
      第29回PFシンポジウム
    • Place of Presentation
      つくば市
    • Related Report
      2011 Research-status Report
  • [Presentation] 溶血性レクチンの多量体化機構のX線小角散乱法による解析

    • Author(s)
      郷田秀一郎
    • Organizer
      第35回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      福岡市東区
    • Related Report
      2011 Research-status Report
  • [Presentation] 溶血性レクチンに相同性を示すサンゴ由来機能未知タンパク質の発現系の構築

    • Author(s)
      牛島佑樹
    • Organizer
      第35回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      福岡市東区
    • Related Report
      2011 Research-status Report
  • [Presentation] 超好熱アーキアPyrococcus horikoshii由来糖認識タンパク質の探索及び遺伝子組換え体

    • Author(s)
      山下謙一郎
    • Organizer
      第35回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      福岡市東区
    • Related Report
      2011 Research-status Report
  • [Presentation] 海産無脊椎動物グミ(Cucumaria echinata)由来CEL-IIIの多量体機構の解明

    • Author(s)
      長尾知直
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] 溶血性レクチンに相同性を示すサンゴ由来タンパク質の発現系の構築

    • Author(s)
      牛島佑樹
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] 黄色ブドウ球菌由来ロイコシジン相同体のin vitroでの多量体化条件の探索

    • Author(s)
      田中伸弥
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] 糖鎖付加デンドリマーを用いたレクチン活性測定法の開発

    • Author(s)
      狩野良太
    • Organizer
      日本農芸化学会西日本支部・中四国支部合同大会
    • Place of Presentation
      宮崎市
    • Related Report
      2011 Research-status Report
  • [Presentation] 糖結合部位に変異を導入したC型レクチンCEL-IVの糖結合特異性と立体構造の解明

    • Author(s)
      本多麻美
    • Organizer
      日本農芸化学会西日本支部・中四国支部合同大会
    • Place of Presentation
      宮崎市
    • Related Report
      2011 Research-status Report
  • [Presentation] C型レクチンCEL-Iの糖結合部位アミノ酸置換による結合特異性の変化

    • Author(s)
      馬場智大
    • Organizer
      日本農芸化学会西日本支部・中四国支部合同大会
    • Place of Presentation
      宮崎市
    • Related Report
      2011 Research-status Report
  • [Presentation] 超好熱古細菌RNasePRNAの高次構造モデル

    • Author(s)
      中尾祐士
    • Organizer
      日本農芸化学会西日本支部・中四国支部合同大会
    • Place of Presentation
      宮崎市
    • Related Report
      2011 Research-status Report
  • [Presentation] 超好熱アーキア由来膜タンパク質の緑色蛍光タンパク質融合体としての生産

    • Author(s)
      眞方山慶佑
    • Organizer
      日本農芸化学会西日本支部・中四国支部合同大会
    • Place of Presentation
      宮崎市
    • Related Report
      2011 Research-status Report
  • [Presentation] ストップドフローX線小角散乱測定による溶血性レクチンの構造変化の解明

    • Author(s)
      郷田秀一郎
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば市
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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