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Elucidation of the selective lignin degradation mechanism in a white rot fungus and the biosynthetic pathway of its key metabolites through a proteomic approach

Research Project

Project/Area Number 23780183
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Wood science
Research InstitutionKyoto University

Principal Investigator

WATANABE Takahito  京都大学, 生存圏研究所, 助教 (30362403)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2011: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsリグニン / 白色腐朽菌 / 脂質関連代謝物 / プロテオーム
Research Abstract

A white-rot fungus, Ceriporiospsis subvermispora, can selectively degrade lignin without serious damage to cellulose. In order to elucidate the molecular mechanism of the selective lignin degradation, we tried to investigate the cellular response of C. subvermispora to a lignin fragment, vanillin. We obtained expression profiles of C. subvermispora in the presence and absence of vanillin through a proteomics-based approach, and detected vanillin-induced and repressed proteins. Using suppression subtractive hybridization, moreover, we also obtained many genes clones that are up-regulated in the presence of vanillin.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (11 results)

All 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 1 results) Presentation (8 results)

  • [Journal Article] Vanillin-induced cellular response in the white rot fungus, Ceriporiopsis subvermispora2013

    • Author(s)
      Watanabe, T., Nishimura, H, Watanabe, T
    • Journal Title

      Sustainable Humanosphere

      Volume: 9 Pages: 2-2

    • NAID

      120005465870

    • URL

      http://www.rish.kyoto-u.ac.jp/ISSN/1880-6503/

    • Related Report
      2013 Final Research Report
  • [Journal Article] Vanillin-induced cellular response in the white rot fungus, Ceriporiopsis subvermispora2013

    • Author(s)
      Takahito Watanabe, Hiroshi Nishimura, Takashi Watanabe
    • Journal Title

      Sustainable Humanosphere

      Volume: 9 Pages: 2-2

    • NAID

      120005465870

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Comparative genomics of Ceriporiopisis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis2012

    • Author(s)
      Elena Fernandez-Fueyo, Chiaki Hori, et.al.
    • Journal Title

      PNAS

      Volume: 109 Issue: 14 Pages: 5458-5463

    • DOI

      10.1073/pnas.1119912109

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 選択的白色腐朽菌Ceriporiopsis subvermisporaのバニリンに対する細胞応答2013

    • Author(s)
      渡邊崇人,森賢一郎,木戸彩子,長谷川隆大,西村裕志,本田与一,渡辺隆司
    • Organizer
      第13回糸状菌分子生物学コンファレンス
    • Place of Presentation
      つくば
    • Year and Date
      2013-11-21
    • Related Report
      2013 Final Research Report
  • [Presentation] 選択的リグニン分解菌のバニリンに対する細胞応答2013

    • Author(s)
      渡邊崇人,森賢一郎,木戸彩子,長谷川隆大,和泉千尋,津田冴子,西村裕志,渡辺隆司
    • Organizer
      日本農芸化学会2013年度(平成25年度)大会
    • Place of Presentation
      仙台
    • Year and Date
      2013-03-26
    • Related Report
      2013 Final Research Report
  • [Presentation] 選択的リグニン分解菌のバニリンに対する細胞応答2013

    • Author(s)
      渡邊崇人
    • Organizer
      日本農芸化学会2013年度(平成25年度)大会
    • Place of Presentation
      東北大学(仙台市)
    • Related Report
      2012 Research-status Report
  • [Presentation] 選択的白色腐朽菌Ceriporiopsis subvermisporaのリグニン分解フラグメントに対する転写応答及び代謝物解析2012

    • Author(s)
      森賢一郎,高田理江,渡邊崇人,本田与一,渡辺隆司
    • Organizer
      第62回日本木材学会大会
    • Place of Presentation
      札幌
    • Year and Date
      2012-03-17
    • Related Report
      2013 Final Research Report
  • [Presentation] Cellular response of a selective lignin-degrading fungus to vanillin. Lignobiotech II Symposium2012

    • Author(s)
      Watanabe, T., Mori, K., Kido, A., Izumi, C., Hasegawa, T., Tsuda, S., Nishimura, H., Honda, Y., Watanabe, T
    • Organizer
      2nd Symposium on Biotechnology Applied to Ligonocelluloses
    • Place of Presentation
      Fukuoka
    • Related Report
      2013 Final Research Report
  • [Presentation] Cellular response of a selective lignin-degrading fungus to vanillin2012

    • Author(s)
      Watanabe, T.
    • Organizer
      Lignobiotech II Symposium, 2nd Symposium on Biotechnology Applied to Lignocelluloses
    • Place of Presentation
      アクロス福岡(福岡市)
    • Related Report
      2012 Research-status Report
  • [Presentation] 選択的白色腐朽菌 Ceriporiopsis subvermispora のリグニン分解フラグメントに対する転写応答及び代謝物解析2012

    • Author(s)
      森賢一郎
    • Organizer
      第62回日本木材学会大会
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2011 Research-status Report
  • [Presentation] 選択的白色腐朽菌 Ceriporiopsis subvermispora のバニリンに対する細胞応答

    • Author(s)
      渡邊崇人,森賢一郎,木戸彩子,長谷川隆大,西村裕志,本田与一,渡辺隆司
    • Organizer
      第13回糸状菌分子生物学コンファレンス
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2013 Annual Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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