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Novel strategy for medicinal chemistry utilizing protein knockdown

Research Project

Project/Area Number 23790125
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Drug development chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

ISHIKAWA Minoru  東京大学, 分子細胞生物学研究所, 講師 (70526839)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords医薬分子設計 / タンパク質分解 / 創薬化学 / 標的タンパク質 / 神経変性疾患 / 標的分子同定 / タンパク質ノックダウン
Research Abstract

We have developed a method that induces selective degradation of target proteins by small molecules consisting of cIAP1 ligand linked to a ligand of the target protein (protein knockdown). In this study, protein knockdown was applied to target identification of bioactive small molecules, and degradation of misfolded proteins which would cause neurodegenerative disorders. As a proof of concept, a known target protein was identified with a proteome analysis using a linked molecule consisting of cIAP1 ligand and a small molecule which binds to a protein. On the other hand, molecules consisting of dyes bound to the misfolded proteins linked to cIAP1 ligand were designed and synthesized. The molecule was proved to bind a poly glutamine (polyQ) peptide, a major component of misfoled proteins, and decrease proteins which were immunostained with anti-polyQ antibody in living cells.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (25 results)

All 2013 2012 2011 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (16 results) (of which Invited: 1 results) Remarks (1 results)

  • [Journal Article] Double protein knockdown of cIAP1 and CRABP-II using a hybrid molecule consisting of ATRA and IAPs antagonist2012

    • Author(s)
      Yukihiro Itoh, Minoru Ishikawa, Risa Kitaguchi, Keiichiro Okuhira, Mikihiko Naito, Yuichi Hashimoto
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 22 Pages: 4453-4457

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Double protein knockdown of cIAP1 and CRABP-II using a hybrid molecule consisting of ATRA and IAPs antagonist2012

    • Author(s)
      Y. Itoh, M. Ishikawa, R.Kitaguchi, K.Okuhira, M.Naito, Y.Hashimoto
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 22 Issue: 13 Pages: 4453-4457

    • DOI

      10.1016/j.bmcl.2012.04.134

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Double Protein Knockdown of cIAP1 and CRABP-II Using a Hybrid Molecule Consisting of ATRA and IAPs Antagonist2012

    • Author(s)
      Yukihiro Itoh, Minoru Ishikawa, Risa Kitaguchi, Keiichiro Okuhira, Mikihiko Naito, Yuichi Hashimoto
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 22

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Design, synthesis and biological evaluation of nuclear receptor-degradation inducers2011

    • Author(s)
      Yukihiro Itoh, Risa Kitaguchi, Minoru Ishikawa, Mikihiko Naito, Yuichi Hashimoto
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 19 Pages: 6768-6778

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Specific degradation of CRABP-II via cIAP1-mediated ubiquitylation induced by hybrid molecules that crosslink cIAP1 and the target protein2011

    • Author(s)
      Keiichiro Okuhira, Nobumichi Ohoka, Kimie Sai, Tomoko Nishimaki-Mogami, Yukihiro Itoh, Minoru Ishikawa, Yuichi Hashimoto, Mikihiko Naito
    • Journal Title

      FEBS Lett.

      Volume: 585 Pages: 1147-1152

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Confirmation of molecular planarity disruption effect on aqueous solubility improvement of β-naphthoflavone analogs2011

    • Author(s)
      Yuji Fujita, 他5名
    • Journal Title

      Heterocycles

      Volume: 83 Issue: 11 Pages: 2563-2575

    • DOI

      10.3987/com-11-12352

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Design, synthesis and biological evaluation of nuclear receptor-degradation inducers2011

    • Author(s)
      伊藤幸裕
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 19 Issue: 22 Pages: 6768-6778

    • DOI

      10.1016/j.bmc.2011.09.041

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Inhibition of Restriction Enzymes EcoRI, BamHI and HindIII by Phenethylphenylphthalimides Derived from Thalidomide2011

    • Author(s)
      Kazunori Motoshima, Minoru Ishikawa, Yuichi Hashimoto, Kazuyuki Sugita
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 59 Issue: 7 Pages: 880-884

    • DOI

      10.1248/cpb.59.880

    • NAID

      130000748024

    • ISSN
      0009-2363, 1347-5223
    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 神経変性疾患原因タンパク質分解誘導剤の創製研究2013

    • Author(s)
      友重秀介、北口梨沙、大金賢司、石川 稔、内藤幹彦、橋本祐一
    • Organizer
      日本薬学会第133年会
    • Place of Presentation
      横浜
    • Year and Date
      2013-03-28
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞内に局在するタンパク質を標 的としたプロテインノックダウン技術の評価2013

    • Author(s)
      奥平桂一郎、大岡伸通、最上(西巻)知子、伊藤幸裕、石川稔、橋本祐一、内藤幹彦
    • Organizer
      日本薬学会 第133年会
    • Place of Presentation
      横浜
    • Year and Date
      2013-03-28
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質を特異的に分解する 低分子の創製と応用2012

    • Author(s)
      石川稔
    • Organizer
      東京大学分子細胞生物学研究所第17回分生研シンポジ ウム
    • Place of Presentation
      東京
    • Year and Date
      2012-10-29
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質ノックダウン法を利用した新治療戦略と低分子の標的タンパ ク質同定法2012

    • Author(s)
      石川稔、どど孝介、伊藤幸裕、淺沼三和子、佐藤伸一、袖岡幹子、内藤幹彦、橋本祐一
    • Organizer
      日本ケミカルバイオロジー学会第7回年会
    • Place of Presentation
      京都
    • Year and Date
      2012-06-07
    • Related Report
      2012 Final Research Report
  • [Presentation] Development of small molecules that induce IAP-mediated ubiquitylation and proteasomal degradation of target proteins, The Sixth International Conference SUMO, Ubiquitin2012

    • Author(s)
      Mikihiko Naito, Keiichiro Okuhira, Nobumichi Ohoka, Norihito Shibata, Takayuki Hattori, Yukihiro Itoh, Minoru Ishikawa, Yuichi Hashimoto
    • Organizer
      UBL Proteins:Implications for Human Diseases
    • Place of Presentation
      Houston, TX, United States ofAmerica
    • Related Report
      2012 Final Research Report
  • [Presentation] Development of Hybrid Small Molecules That Induce IAP-Mediated Ubiquitylation and Proteasomal Degradation of Target Proteins in a Specific Manner2012

    • Author(s)
      M. Naito, K. Okuhira, Y. Demizu, Y. Itoh, M. Ishikawa, N. Ohoka, N. Shibata, T. Hattori, T. Nishimaki-Mogami, M. Kurihara, Y. Hashimoto
    • Organizer
      Cell Symposia: Genetics and Chemistry Sharing a Language of Discovery
    • Place of Presentation
      Cambridge, MA
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development of small molecules that induce IAP-mediated ubiquitylation and proteasomal degradation of target proteins.2012

    • Author(s)
      Mikihiko Naito, Keiichiro Okuhira, Nobumichi Ohoka, Norihito Shibata, Takayuki Hattori, Yukihiro Itoh, Minoru Ishikawa, Yuichi Hashimoto
    • Organizer
      The Sixth International Conference SUMO, Ubiquitin, UBL Proteins: Implications for Human Diseases
    • Place of Presentation
      Houston, USA
    • Related Report
      2011 Research-status Report
  • [Presentation] Improvement in solubility of bicyclic molecules focusing on dihedral angle and symmetry2012

    • Author(s)
      Minoru Ishikawa, Yuichi Hashimoto
    • Organizer
      243rd American Chemical Society National Meeting & Exposition
    • Place of Presentation
      San Diego, USA
    • Related Report
      2011 Research-status Report
  • [Presentation] 核内受容体を細胞内で選択的 に分解誘導する分子の創製2011

    • Author(s)
      北口梨沙、伊藤幸裕、石川稔 、内藤幹彦、橋本祐一
    • Organizer
      第22回日本レチノイド研究会 学術集会
    • Place of Presentation
      東京
    • Year and Date
      2011-11-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Protein Knockdown: Selective Degradation of Target Proteins in Cells Using Methyl Bestatin-ligand Hybrid Molecules2011

    • Author(s)
      Minoru Ishikawa, Yukihiro Itoh, Risa Kitaguchi, Shinichi Sato, Mikihiko Naito, Yuichi Hashimoto
    • Organizer
      8th AFMC International Medicinal Chemistry Symposium
    • Place of Presentation
      Tokyo, JAPAN
    • Related Report
      2011 Research-status Report
  • [Presentation] 核内受容体を細胞内で選択的に分解誘導する分子の創製2011

    • Author(s)
      北口梨沙、伊藤幸裕、石川稔、内藤幹彦、橋本祐一
    • Organizer
      第22回日本レチノイド研究会 学術集会
    • Place of Presentation
      東京
    • Related Report
      2011 Research-status Report
  • [Presentation] Development of Hybrid Small Molecules That Induce IAP-Mediated Ubiquitylation and Proteasomal Degradation of Target Proteins in a Specific Manner

    • Author(s)
      Mikihiko Naito, Keiichiro Okuhira, Yosuke Demizu, Yukihiro Itoh, Minoru Ishikawa, Nobumichi Ohoka, Norihito Shibata, Takayuki Hattori, Tomoko Nishimaki-Mogami, Masaaki Kurihara, Yuichi Hashimoto
    • Organizer
      Cell Symposia: Genetics and Chemistry Sharing a Language of Discovery
    • Place of Presentation
      Cambridge, MA, United States of America
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質ノックダウン法を利用した新治療戦略と低分子の標的タンパク質同定法

    • Author(s)
      石川稔、どど孝介、伊藤幸裕、淺沼三和子、佐藤伸一、袖岡幹子、内藤幹彦、橋本祐一
    • Organizer
      日本ケミカルバイオロジー学会第7回年会
    • Place of Presentation
      京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] タンパク質を特異的に分解する低分子の創製と応用

    • Author(s)
      石川稔
    • Organizer
      東京大学 分子細胞生物学研究所 第17回分生研シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞内に局在するタンパク質を標的としたプロテインノックダウン技術の評価

    • Author(s)
      奥平桂一郎、大岡伸通、最上(西巻)知子、伊藤幸裕、石川稔、橋本祐一、内藤幹彦
    • Organizer
      日本薬学会 第133年会
    • Place of Presentation
      横浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 神経変性疾患原因タンパク質分解誘導剤の創製研究

    • Author(s)
      友重秀介、北口梨沙、大金賢司、石川稔、内藤幹彦、橋本祐一
    • Organizer
      日本薬学会 第133年会
    • Place of Presentation
      横浜
    • Related Report
      2012 Annual Research Report
  • [Remarks] 東京大学 分子細胞生物学研究所 生体有機化学研究分野

    • URL

      http://www.iam.u-tokyo.ac.jp/chem/IMCB-8ken-HP/Index.html

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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