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Comprehensive analysis of cardiomyopathy-related signaling networks based on quantitative phosphoproteomics

Research Project

Project/Area Number 23790889
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Circulatory organs internal medicine
Research InstitutionKyoto University

Principal Investigator

WAKABAYASHI Masaki  京都大学, 大学院・薬学研究科, 助教 (70552024)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords心筋症 / リン酸化プロテオミクス / 定量プロテオミクス / プロテオミクス / シグナルネットワーク / LC-MS/MS / 心不全
Research Abstract

In this study, a novel method for reproducible, unbiased, and quantitative extraction of tissue proteins was successfully developed. Using this method combined with an optimized protocol for phosphopeptide enrichment and LC-MS/MS analysis, more than 6,000 phosphopeptides were identified and quantified from two kinds of mouse models for cardiomyopathy and a control one, and 20% of the identified peptides showed more than two-fold changes in MS signals. From these data, I am attempting to identify specific signal networks closely related to the onset and development of cardiomyopathy.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (27 results)

All 2013 2012 2011

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (22 results) (of which Invited: 3 results) Book (1 results)

  • [Journal Article] Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot nanoLC-MS/MS analysis with meter-scale monolithic silica columns2013

    • Author(s)
      山名涼太、岩崎未央、若林真樹、中川誠人、山中伸弥、石濱泰
    • Journal Title

      Journal of Proteome Research

      Volume: 12 Issue: 1 Pages: 214-221

    • DOI

      10.1021/pr300837u

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Temporal Profiling of Lapatinib-suppressed Phosphorylation Signals in EGFR/HER2 Pathways2012

    • Author(s)
      Koshi Imami, Naoyuki Sugiyama, Haruna Imamura, Masaki Wakabayashi, Masaru Tomita, Masatoshi Taniguchi, Takayuki Ueno, Masakazu Toi, Yasushi Ishihama
    • Journal Title

      Molecular and Cellular Proteomics

      Volume: 11 Issue: 12 Pages: 1741-1757

    • DOI

      10.1074/mcp.m112.019919

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A putative polypeptide N-acetylgalactosaminyltransferase/Williams-Beuren syndrome chromosome region 17 (WBSCR17) regulates lamellipodium formation and macropinocytosis2012

    • Author(s)
      Yoshiaki Nakayama
    • Journal Title

      The Journal of biological chemistry

      Volume: 287 Issue: 38 Pages: 32222-32235

    • DOI

      10.1074/jbc.m112.370932

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Analytical strategies for shotgun phosphoproteomics : status and prospects2012

    • Author(s)
      Haruna Imamura, Masaki Wakabayashi, Yasushi Ishihama
    • Journal Title

      Seminars in Cell and Developmental Biology

      Volume: 23(8) Issue: 8 Pages: 836-42

    • DOI

      10.1016/j.semcdb.2012.05.007

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Presentation] リン酸化プロテオミクスを用いた分子標的薬プロファイリング2013

    • Author(s)
      若林真樹
    • Organizer
      日本薬学会第133 年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2012 Final Research Report
  • [Presentation] リン酸化プロテオミクスを用いた 分子標的薬プロファイリング2013

    • Author(s)
      若林真樹
    • Organizer
      日本薬学会第133年会
    • Place of Presentation
      パシフィコ横浜, 神奈川
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Enhanced identification of phosphopeptides by peptide dimethylation coupled with titania chromatography2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      60th American Society for Mass Spectrometry Conference
    • Place of Presentation
      Vancouver (Canada)
    • Related Report
      2012 Final Research Report
  • [Presentation] Enhanced identification of phosphopeptides by peptide dimethylation coupled with titania chromatography2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      Asia Oceania Human Proteome Organization 6th Congress
    • Place of Presentation
      Beijing (China)
    • Related Report
      2012 Final Research Report
  • [Presentation] 微量組織試料のリン酸化プロテオーム解析法2012

    • Author(s)
      若林真樹
    • Organizer
      日本プロテオーム学会2012 年大会
    • Place of Presentation
      日本科学未来館(東京)
    • Related Report
      2012 Final Research Report
  • [Presentation] リン酸化プロテオーム計測システムの高感度化と極微量組織試料への応用2012

    • Author(s)
      若林真樹
    • Organizer
      第11回次世代を担う若手のためのフィジカルファマフォラム
    • Place of Presentation
      ホテル平安の森京都(京都)
    • Related Report
      2012 Final Research Report
  • [Presentation] リン酸化修飾シグナル病の解明に向けた極微量臨床試料解析法の構築2012

    • Author(s)
      若林真樹
    • Organizer
      第25回バイオメディカル分析化学シンポジウム
    • Place of Presentation
      慶応大学薬学部(東京)
    • Related Report
      2012 Final Research Report
  • [Presentation] Highly sensitive phosphoproteome profiling of various human cancers from minuscule amount of formalin-fixed and paraffin-embedded tissue sections on slides2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      HUPO 2012 11th Annual World Congress
    • Place of Presentation
      Boston (USA)
    • Related Report
      2012 Final Research Report
  • [Presentation] In-depth pharmaco-phosphoproteomics using meter-long monolithic columns to evaluate molecular-targeting drugs2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      19th International Mass Spectrometry Conference
    • Place of Presentation
      京都国際会館(京都)
    • Related Report
      2012 Final Research Report
  • [Presentation] ジメチル標識ペプチドのRP-LC における保持共同評価と定量プロテオミクスの高効率化2012

    • Author(s)
      若林真樹
    • Organizer
      第23回クロマトグラフィー科学会議
    • Place of Presentation
      長良川国際会議場(岐阜)
    • Related Report
      2012 Final Research Report
  • [Presentation] Enhanced identification of phosphopeptides by peptide dimethylation coupled with titania chromatography2012

    • Author(s)
      Masaki Wakabayahsi
    • Organizer
      60th American Society for Mass Spectrometry Conference
    • Place of Presentation
      Vancouver, Canada
    • Related Report
      2012 Annual Research Report
  • [Presentation] Enhanced identification of phosphopeptides by peptide dimethylation coupled with titania chromatography2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      Asia Oceania Human Proteome Organization 6th Congress
    • Place of Presentation
      Beijing, China
    • Related Report
      2012 Annual Research Report
  • [Presentation] 微量組織試料のリン酸化プロテオーム解析法2012

    • Author(s)
      若林真樹
    • Organizer
      日本プロテオーム学会2012年大会
    • Place of Presentation
      日本科学未来館, 東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] リン酸化修飾シグナル病の病態解明に向けた極微量臨床試料解析法の構築2012

    • Author(s)
      若林真樹
    • Organizer
      第25回バイオメディカル分析化学シンポジウム
    • Place of Presentation
      慶応大学薬学部, 東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] リン酸化プロテオーム計測システムの高感度化と極微量組織試料への応用2012

    • Author(s)
      若林真樹
    • Organizer
      第11回次世代を担う若手のためのフィジカルファーマフォーラム
    • Place of Presentation
      ホテル平安の森京都, 京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] Highly sensitive phosphoproteome profiling of various human cancers from minuscule amount of formalin-fixed and paraffin-embedded tissue sections on slides.2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      HUPO 2012 11th Annual World Congress
    • Place of Presentation
      Boston, USA
    • Related Report
      2012 Annual Research Report
  • [Presentation] In-depth pharmaco-phosphoproteomics using meter-long monolithic columns to evaluate molecular-targeting drugs2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      19th International Mass Spectrometry Conference
    • Place of Presentation
      京都国際会館, 京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] ジメチル標識ペプチドのRP-LCにおける保持挙動評価と 定量プロテオミクスの高効率化2012

    • Author(s)
      若林真樹
    • Organizer
      第23回クロマトグラフィー科学会議
    • Place of Presentation
      長良川国際会議場, 岐阜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 微量組織試料に対する定量的リン酸化プロテオーム解析法の確立2011

    • Author(s)
      若林真樹、塚原麻伊、吉原宏樹、増田豪、石濱泰
    • Organizer
      日本プロテオーム学会 2011 年大会
    • Place of Presentation
      朱鷺メッセ(新潟)
    • Related Report
      2012 Final Research Report
  • [Presentation] 高感度LC-MS/MS システムを用いた極微量組織試料のプロテオーム解析技術の確立2011

    • Author(s)
      若林真樹、増田豪、石濱泰
    • Organizer
      第22回クロマトグラフィー科学会
    • Place of Presentation
      東北大学(宮城)
    • Related Report
      2012 Final Research Report
  • [Presentation] 微量組織試料に対する定量的リン酸化プロテオーム解析法の確立2011

    • Author(s)
      若林真樹、塚原麻伊、吉原宏樹、増田豪、石濱泰
    • Organizer
      日本プロテオーム学会2011年大会
    • Place of Presentation
      朱鷺メッセ(新潟県)
    • Related Report
      2011 Research-status Report
  • [Presentation] 高感度LC-MS/MSシステムを用いた極微量組織試料のプロテオーム解析技術の確立2011

    • Author(s)
      若林真樹、増田豪、石濱泰
    • Organizer
      第22回クロマトグラフィー科学会
    • Place of Presentation
      東北大学(宮城県)
    • Related Report
      2011 Research-status Report
  • [Book] ナノバイオ技術と最新創薬応用研究2012

    • Author(s)
      若林真樹、杉山直幸、石濱泰
    • Publisher
      メディカルドゥ
    • Related Report
      2012 Final Research Report 2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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