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Mechanical modes of cell migration in fiber networks

Research Project

Project/Area Number 23K13015
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 12040:Applied mathematics and statistics-related
Research InstitutionKyoto University

Principal Investigator

Diez Antoine  京都大学, 高等研究院, 特定研究員 (50975258)

Project Period (FY) 2023-04-01 – 2028-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2027: ¥390,000 (Direct Cost: ¥300,000、Indirect Cost: ¥90,000)
Fiscal Year 2026: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2025: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2024: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2023: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordscell migration / self organization / mechanical constraints / deformation / continuum limit / fiber networks / probabilistic modeling / in silico modeling / fiber network / tissue modelling / simulation
Outline of Research at the Start

This research studies the emergence of complex self-organized structures in biology due to cell migration. It is based on a new model which includes mechanical interactions between the cells and their medium. It is studied both using computer simulations and analytically using mathematical methods.

Outline of Annual Research Achievements

The main research achievement of this year is the submission of a preprint on a new model for soft body simulations in collaboration with Jean Feydy (Inria, Paris). This model is related to the initial research objective of designing realistic mechanical models of cell migration, but it also extends this initial goal to related important problems such as cell sorting phenomena. The mathematical analysis of this model is still on-going following the statistical physics framework explained in the Research Plan.

The mathematical model of fiber networks introduced in the Research Plan is currently under study in collaboration with Louis-Pierre Chaintron (ENS Paris). Progress have been made this year on the analytical framework. In particular, the development of a new probabilistic method is expected to overcome a major mathematical difficulty in the study of scaling limits for large random networks.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

The analytical study initially planned is progressing rather smoothly. The mathematical framework has been developed and should lead to the desired goal.

The numerical part of the project has been slightly delayed in order to develop the new model detailed in the summary of research achievements. This new model has nevertheless lead to an unexpected research achievement which will be developed in the future, jointly with the initial goal.

Strategy for Future Research Activity

The first goal of the coming year is to fulfill the main analytical goal of the Research Plan, namely the derivation of a continuum model for fiber networks. This will be based on the novel probabilistic framework developed this year and this achievement seems possible in the coming months. Further analytical and numerical works will then be considered.

In addition, the new model designed this year has extended the initial goal of the project by considering more general mechanical modes of interactions. This suggests new directions of research. A constant key question is the derivation of a continuum model, as for the initial project, and can be considered as a first objective. In addition, applications of this model in developmental biology are also planned.

Report

(1 results)
  • 2023 Research-status Report
  • Research Products

    (11 results)

All 2024 2023 Other

All Int'l Joint Research (3 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Open Access: 1 results) Presentation (6 results) (of which Int'l Joint Research: 4 results,  Invited: 6 results) Funded Workshop (1 results)

  • [Int'l Joint Research] University of Vienna(オーストリア)

    • Related Report
      2023 Research-status Report
  • [Int'l Joint Research] ENS Paris(フランス)

    • Related Report
      2023 Research-status Report
  • [Int'l Joint Research] Inria Paris(フランス)

    • Related Report
      2023 Research-status Report
  • [Journal Article] An optimal transport model for dynamical shapes, collective motion and cellular aggregates2024

    • Author(s)
      Diez, Antoine and Feydy, Jean
    • Journal Title

      arXiv preprint: arXiv.2402.17086

      Volume: -

    • Related Report
      2023 Research-status Report
    • Open Access / Int'l Joint Research
  • [Presentation] Particle systems with geometrical constraints and applications2024

    • Author(s)
      Antoine Diez
    • Organizer
      FJLMI Seminar
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] An optimal transport model for dynamical shapes, collective motion and cellular aggregates2024

    • Author(s)
      Antoine Diez
    • Organizer
      非線形現象の数値シミュレーションと解析2024
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] An optimal transport model for dynamical shapes, collective motion and cellular aggregates2024

    • Author(s)
      Antoine Diez
    • Organizer
      BioPDE Days 2024
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] An optimal transport model for dynamical shapes, collective motion and cellular aggregates2024

    • Author(s)
      Antoine Diez
    • Organizer
      MATRIX-RIMS Tandem Workshop Evolutionary Partial Differential Equations and Application
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Introduction to Propagation of Chaos and Mean-Field Systems2023

    • Author(s)
      Antoine Diez
    • Organizer
      Summer School - Mean-Field Models
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Patterning conditions in bilayer reaction-cross-diffusion systems2023

    • Author(s)
      Antoine Diez
    • Organizer
      ICIAM 2023
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Funded Workshop] Development across scales, Kyoto University, Faculty of Medicine Campus2023

    • Related Report
      2023 Research-status Report

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Published: 2023-04-13   Modified: 2024-12-25  

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