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Evolutionary forces driving the diversity of protist symbioses

Research Project

Project/Area Number 23K14256
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 45030:Biodiversity and systematics-related
Research InstitutionOkinawa Institute of Science and Technology Graduate University

Principal Investigator

HUSNIK Filip  沖縄科学技術大学院大学, 進化・細胞・共生の生物学ユニット, 准教授 (30886130)

Project Period (FY) 2023-04-01 – 2025-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2024: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2023: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordssymbiosis / protist / bacteria / archaea / genomics / organelle / evolution / mitochondrion
Outline of Research at the Start

I will the diversity of symbioses in microbial eukaryotes. I will use advanced single-cell sequencing and microscopy methods to predict the symbiont function(s), uncover their cellular localization, and understand their evolution. The results of the project will clarify the current symbiosis theory and propose new fundamental mechanisms for how symbioses evolve.

Outline of Annual Research Achievements

Our major published achievements so far include work on 7 (6 symbiont-derived) genomes in a single cryptomonad cell (George et al., Cur Biol 2023) and a study showing that previously reported symbionts in Symbiomonas were misidentified giant viruses (Cho et al., PLoS Genetics, 2024).

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

Due to the solid preparation status with many samples already collected or cultured in my group, the initial plan to screen a diversity of protists for symbionts is largely finished.

Strategy for Future Research Activity

In the FY2024, we will proceed with a detailed characterization of the selected systems. So far, we published our work on 2 species (Cryptomonas and Symbiomonas). A manuscript on 7 species of large benthic foraminifera is currently drafted and additional manuscripts on >5 systems are in preparation. We will thus reach the number of ~10 characterized systems as proposed in the application.

Report

(1 results)
  • 2023 Research-status Report
  • Research Products

    (10 results)

All 2024 2023

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but do reveal the presence of giant viruses2024

    • Author(s)
      Anna Cho ,Gordon Lax,Samuel J. Livingston,Yumiko Masukagami,Mariia Naumova,Olivia Millar,Filip Husnik,Patrick J. Keeling
    • Journal Title

      PLoS Genetics

      Volume: NA Issue: 4 Pages: e1011218-e1011218

    • DOI

      10.1371/journal.pgen.1011218

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A single cryptomonad cell harbors a complex community of organelles, bacteria, a phage, and selfish elements2023

    • Author(s)
      George EE, Barcyte D, Lax G, Livingston S, Tashyreva D, Husnik F, Lukes J, Elias M, Keeling PJ
    • Journal Title

      Current Biology

      Volume: 33 Issue: 10 Pages: 1982-1996

    • DOI

      10.1016/j.cub.2023.04.010

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Cataloging Marine Symbioses with Omics and Advanced Imaging Methods.2024

    • Author(s)
      Husnik, F
    • Organizer
      WPI AIMEC (Tohoku University/JAMSTEC)
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Integrating Diverse Subcellular, Single-Cell, and Three-Dimensional Methods to Understand How Endosymbionts Become Organelles.2023

    • Author(s)
      Husnik, F
    • Organizer
      Gordon Research Conference on Animal-Microbe Symbioses
    • Related Report
      2023 Research-status Report
  • [Presentation] Integrating omics with 3D imaging to understand how endosymbionts become organelles2023

    • Author(s)
      Husnik, F
    • Organizer
      ECOP-ISOP Joint Meeting
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research
  • [Presentation] Two Billion Years of Eukaryotic Symbioses: Major Transitions and Cellular Innovations2023

    • Author(s)
      Husnik, F
    • Organizer
      SymbNET PhD Summer School on Host-Microbe Symbioses
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Integrating omics with 3D imaging for symbioses of uncultivated aquatic protists.2023

    • Author(s)
      Husnik, F
    • Organizer
      SymbNET PhD Summer School on Host-Microbe Symbioses
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Integrating omics with 3D imaging to understand how endosymbionts become organelles.2023

    • Author(s)
      Husnik, F
    • Organizer
      Beijing Normal University
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Eukaryotic symbioses of large benthic foraminifera2023

    • Author(s)
      Langlet D., Ruppli R., Suzuki N.H., Sur O., Phua Y.H., Fujita K., and Husnik F.
    • Organizer
      FORAMS
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research
  • [Presentation] Exploring Marine Symbioses with Genomics, Advanced Imaging, and AI Tools2023

    • Author(s)
      Husnik, F
    • Organizer
      Tohoku University
    • Related Report
      2023 Research-status Report
    • Invited

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Published: 2023-04-13   Modified: 2024-12-25  

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