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The mechanism by which Bordetella bronchiseptica avoids predation by amoebae

Research Project

Project/Area Number 23K14520
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 49050:Bacteriology-related
Research InstitutionOsaka University

Principal Investigator

NugrahaKrisna Dendi  大阪大学, 微生物病研究所, 特任研究員(常勤) (00963430)

Project Period (FY) 2023-04-01 – 2025-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2024: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2023: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsBordetella / Acanthamoeba / Survival / BvgAS / Coculture / Extrahost / 気管支敗血症菌 / 環境アメーバ
Outline of Research at the Start

気管支敗血症菌(Bb)は広く哺乳動物に呼吸器感染を起こす病原細菌である。本菌は宿主動物間で感染伝播するほか、環境中で土壌アメー バ(Acanthamoeba castellanii, Ac; Dictyostelium discoideum, Dd)内などで生息し、そこから宿主に感染伝播する可能性が指摘されてきた。もしBbが環境中から宿主感染をするならば、宿主間感染の場合とは別の感染症防除法を考察する必要がある。そこで本研究では、Bbが土壌アメーバの貪食を回避して生息するメカニズムを詳細に解析して、環境からの感染伝播の可能性を議論する材料を提供する。

Outline of Annual Research Achievements

B. bronchiseptica exhibits distinct Bvg+ and Bvg- phenotypes. Our experimental results have indicated that the growth of a mutant strain locked in the Bvg+ phase in coculture with A. castellanii was significantly reduced compared to the wild type or a Bvg- phase-locked strain. Since Bvg- phase-specific factors are less understood, we focused on screening genes expressed in the Bvg+ phase, including known virulence genes, that are involved in intra-amoeba survival. To this end, we used a series of Bvg+ phase-locked strain-derived mutants deficient in multiple Bvg+ phase-specific virulence factors and subjected them to a coculture assay. Our findings indicated that some multiple mutants deficient in filamentous hemagglutinin (FHA) and/or fimbriae (FIM), the major adhesins produced by B. bronchiseptica in the Bvg+ phase, survived similarly to the wild type and the Bvg- phase-locked mutant. Independently, ΔfhaB, ΔfimBCD, and ΔfhaB/ΔfimBCD derived from the Bvg+ phase-locked mutant survived well in coculture with A. castellanii, similar to the Bvg- phase-locked mutant. The numbers of intracellular Bvg+ phase-locked ΔfhaB and ΔfimBCD strains recovered from A. castellanii were similar to those of the wild type and the Bvg- phase-locked mutant. Furthermore, microscopic analyses demonstrated that the Bvg+ phase-locked ΔfhaB and/or ΔfimBCD strains enter contractile vacuoles of A. castellanii and evade its predation, similar to the wild type. These results indicate that FHA and FIM encoded by fhaB and fimBCD, respectively, are targeted for predation by A. castellanii.

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

Our positive screening strategy using multiple-mutant strains that led to the identification of FHA and FIM, two Bvg+ phase-specific adhesins targeted by A. castellanii predation, has been published as a research article in Microbiology Spectrum. We were able to proceed smoothly because our laboratory had prepared and stocked the multiple-mutant strains, which allowed us to start screening immediately. Additionally, the results of our positive screening were also straightforward, as shown directly by the increase in total CFU of the mutant strains after the coculture assays, which made analysis easier. Overall, this progress enables us to move on to the next phase of our research, which involves screening for bacterial factors specifically expressed in the Bvg- phase that may also support B. bronchiseptica survival in A. castellanii.

Strategy for Future Research Activity

There are two possible explanations for why the Bvg+ phase-locked mutant, but not the Bvg- phase-locked mutant, served as prey for the amoebae: factors specifically expressed in the Bvg- phase protect the bacteria from predation, or Bvg+ phase-specific factors are recognized by the amoebae for digestion. While we have identified Bvg+ phase-specific factors that may be targeted by amoeba predation, we still believe that Bvg- phase-specific factors play a role in the survival of B. bronchiseptica in A. castellanii, based on the fact that B. bronchiseptica switches to Bvg- phase at temperatures where the bacteria normally encounter these amoebae. Next year, we will attempt to screen these genes using Transposon Sequencing (Tn-Seq). To achieve this, we have constructed a genome-wide library consisting of approximately ~40,000 transposon-inserted B. bronchiseptica mutants. In addition, we will also optimize the coculture assay protocol used for the negative screening procedure. If promising candidate genes are found through Tn-Seq, we will perform further experiments to characterize these genes.

Report

(1 results)
  • 2023 Research-status Report
  • Research Products

    (10 results)

All 2023

All Journal Article (3 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Journal Article] Survival of Bordetella bronchiseptica in Acanthamoeba castellanii2023

    • Author(s)
      Nugraha Dendi Krisna、Nishida Takashi、Tamaki Yuki、Hiramatsu Yukihiro、Yamaguchi Hiroyuki、Horiguchi Yasuhiko
    • Journal Title

      Microbiology Spectrum

      Volume: 11 Issue: 2

    • DOI

      10.1128/spectrum.00487-23

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RpoN (sigma factor 54) contributes to bacterial fitness during tracheal colonization of <i>Bordetella bronchiseptica</i>2023

    • Author(s)
      Ma Xingyan、Nugraha Dendi K.、Hiramatsu Yukihiro、Horiguchi Yasuhiko
    • Journal Title

      Microbiology and Immunology

      Volume: 68 Issue: 2 Pages: 36-46

    • DOI

      10.1111/1348-0421.13109

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences2023

    • Author(s)
      Saputri Dianita S.、Ismanto Hendra S.、Nugraha Dendi K.、Xu Zichang、Horiguchi Yasuhiko、Sakakibara Shuhei、Standley Daron M.
    • Journal Title

      mSystems

      Volume: 8 Issue: 6

    • DOI

      10.1128/msystems.00722-23

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Interaction between Bordetella bronchiseptica and Acanthamoeba as a transient host in the natural environment2023

    • Author(s)
      Dendi Krisna Nugraha, Takashi Nishida, Yuki Tamaki, Yukihiro Hiramatsu, Hiroyuki Yamaguchi, Yasuhiko Horiguchi
    • Organizer
      第96回日本細菌学会総会
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Survival of Bordetella bronchiseptica in Acanthamoeba castellanii2023

    • Author(s)
      Dendi Krisna Nugraha, Takashi Nishida, Yuki Tamaki, Yukihiro Hiramatsu, Hiroyuki Yamaguchi, Yasuhiko Horiguchi
    • Organizer
      第1回チーム阪大リトリート
    • Related Report
      2023 Research-status Report
  • [Presentation] Genome-wide screening reveals essential genes required by Bordetella bronchiseptica in rat infection2023

    • Author(s)
      Xingyan Ma, Dendi Krisna Nugraha, Yasuhiko Horiguchi
    • Organizer
      第96回日本細菌学会総会
    • Related Report
      2023 Research-status Report
  • [Presentation] Genome-wide screening reveals RpoN contributing to the survival fitness of Bordetella bronchiseptica within rat tracheas2023

    • Author(s)
      Xingyan Ma, Dendi Krisna Nugraha, Yasuhiko Horiguchi
    • Organizer
      第17回細菌学若手コロッセウム
    • Related Report
      2023 Research-status Report
  • [Presentation] Single-cell repertoire profiling of human B cell responses to DTP vaccination2023

    • Author(s)
      Dianita S Saputri, Hendra S Ismanto, Dendi K Nugraha, Yasuhiko Horiguchi, Daron M Standley
    • Organizer
      Bonn Conference on Mathematical Life Sciences
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research
  • [Presentation] Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences2023

    • Author(s)
      Dianita S Saputri, Hendra S Ismanto, Dendi K Nugraha, Zichang Xu, Yasuhiko Horiguchi, Shuhei Sakakibara, Daron M Standley
    • Organizer
      第52回日本免疫学会学術集会
    • Related Report
      2023 Research-status Report
  • [Presentation] Deorphaning B cell responses to DTP vaccination2023

    • Author(s)
      Dianita S Saputri, Hendra S Ismanto, Dendi K Nugraha, Zichang Xu, Yasuhiko Horiguchi, Shuhei Sakakibara, Daron M Standley
    • Organizer
      The 21st Awaji International Forum on Infection and Immunity
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research

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Published: 2023-04-13   Modified: 2024-12-25  

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