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Elucidating the role of tRNA epitranscriptome in Glioma pathology and development of novel therapies

Research Project

Project/Area Number 23K27432
Project/Area Number (Other) 23H02741 (2023)
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeMulti-year Fund (2024)
Single-year Grants (2023)
Section一般
Review Section Basic Section 50010:Tumor biology-related
Research InstitutionTohoku University

Principal Investigator

Rashad Sherif  東北大学, 医工学研究科, 准教授 (00824088)

Co-Investigator(Kenkyū-buntansha) 遠藤 俊毅  東北医科薬科大学, 医学部, 教授 (00535370)
七谷 圭  東北大学, 未来型医療創成センター, 助教 (00547333)
新妻 邦泰  東北大学, 医工学研究科, 教授 (10643330)
金森 政之  東北大学, 医学系研究科, 准教授 (60420022)
Project Period (FY) 2023-04-01 – 2026-03-31
Project Status Granted (Fiscal Year 2024)
Budget Amount *help
¥18,720,000 (Direct Cost: ¥14,400,000、Indirect Cost: ¥4,320,000)
Fiscal Year 2025: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2024: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2023: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
KeywordstRNA / Glioma / Codon bias / mRNA translation / Ferroptosis
Outline of Research at the Start

tRNA modifications were shown to impact cancer pathophysiology. Here, using high throughput mass spectrometry coupled to sequencing analysis, we will identify target tRNA modifications that can be further explored for glioma therapy.

Outline of Annual Research Achievements

During the past year, I was able to finish 2 manuscripts related to tRNA modifications and their potential role. The manuscripts were published as preprints and currently are under review (Al-Mesitef et al, 2024; Rashad et al, 2024). I also presented the preliminary results of my work in the RNA society meeting 2023 in Singapore and The American Society for Cell Biology 2023 in Boston. I was also able to improve the mass spectrometry method and analyze patient derived glioma samples that led to major discovery in terms of tRNA modifications and glioma that is currently being explored.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

Analysis of patient drived glioma samples revealed many tRNA modifications of interest that will be systematically targeted in the next stage. The progress in the analysis of ALKBH1 in glioma is going smoothly and a manuscript is expected to be prepared this year. Structural studies are underway.

Strategy for Future Research Activity

The orignal plan will continue with expansion to a number of tRNA modifications based on the analysis conducted.

Report

(1 results)
  • 2023 Annual Research Report
  • Research Products

    (9 results)

All 2024 2023

All Journal Article (3 results) (of which Int'l Joint Research: 3 results,  Open Access: 3 results) Presentation (6 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Translational response to mitochondrial stresses is orchestrated by tRNA modifications2024

    • Author(s)
      Sherif Rashad, Shadi Al-Mesitef, Abdulrahman Mousa, Yuan Zhou, Daisuke Ando, Guangxin Sun, Tomoko Fukuuchi, Yuko Iwasaki, Jingdong Xiang, Shane R Byrne, Jingjing Sun, Masamitsu Maekawa, Daisuke Saigusa, Thomas J Begley, Peter C Dedon, Kuniyasu Niizuma
    • Journal Title

      Biorxiv preprint

      Volume: 00 Pages: 00-00

    • DOI

      10.1101/2024.02.14.580389

    • Related Report
      2023 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Angiogenin regulates mitochondrial stress and function via tRNA-derived fragments generation and impacting tRNA modifications2024

    • Author(s)
      Shadi Al-Mesitef, Keita Tominaga, Abdulrahman Mousa, Thomas J Begley, Peter C Dedon, Sherif Rashad, Kuniyasu Niizuma
    • Journal Title

      Biorxiv preprint

      Volume: 00 Pages: 00-00

    • DOI

      10.1101/2024.02.13.580206

    • Related Report
      2023 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Mammalian tissue specific translation regulation; role of tRNA epitranscriptome in regulating codon optimality patterns across tissues2023

    • Author(s)
      Daisuke Ando, Sherif Rashad, Thomas J Begley, Hidenori Endo, Masashi Aoki, Peter C Dedon, Kuniyasu Niizuma
    • Journal Title

      Biorxiv preprint

      Volume: 00 Pages: 00-00

    • DOI

      10.1101/2023.10.24.563884

    • Related Report
      2023 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Presentation] Translational regulation of mitochondrial stress response via the tRNA epitranscriptome.2023

    • Author(s)
      Sherif Rashad
    • Organizer
      RNA 2023 meeting Singapore (International RNA society meeting)
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Neuronal sensitivity to oxidative stress is epi- and post-transcriptionally regulated2023

    • Author(s)
      Sherif Rashad
    • Organizer
      Brain Japan 2023 (Japan society for cerebral blood flow and metabolism meeting)
    • Related Report
      2023 Annual Research Report
  • [Presentation] tRNA Queuosine modifications regulate translationalresponse to mitochondrial stress2023

    • Author(s)
      Sherif Rashad , Shadi Al-Mesitef , Abdulrahman Mousa , Daisuke Saigusa , Thomas Begley , Peter Dedon , Kuniyasu Niizuma
    • Organizer
      Cell bio 2023 (American society for cell biology meeting)
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ribosome collisions is targetable vulnerability inglioma during ferroptosis exposure2023

    • Author(s)
      Tianxiang Zhang, Sherif Rashad , Kuniyasu Niizuma;
    • Organizer
      Cell bio 2023 (American society for cell biology meeting)
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] SAMD4A regulates neuronal differentiation andsensitivity to oxidative stress via altering mRNA stability2023

    • Author(s)
      Yuan Zhou, Sherif Rashad , Kuniyasu Niizuma;
    • Organizer
      Cell bio 2023 (American society for cell biology meeting)
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Neuronal sensitivity to oxidative stress is an epi and post transcriptional consequence to neuronal differentiation.2023

    • Author(s)
      Yuan Zhou, Sherif Rashad , Kuniyasu Niizuma;
    • Organizer
      RNA Japan meeting 2023
    • Related Report
      2023 Annual Research Report

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Published: 2023-04-18   Modified: 2024-12-25  

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