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Lyophilization of RPA reagents for detection of SARS CoV-2 DNA and RNA

Research Project

Project/Area Number 23KJ1201
Research Category

Grant-in-Aid for JSPS Fellows

Allocation TypeMulti-year Fund
Section国内
Review Section Basic Section 38030:Applied biochemistry-related
Research InstitutionKyoto University

Principal Investigator

Juma Kevin  京都大学, 農学研究科, 特別研究員(DC2)

Project Period (FY) 2023-04-25 – 2024-03-31
Project Status Discontinued (Fiscal Year 2023)
Budget Amount *help
¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2024: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2023: ¥900,000 (Direct Cost: ¥900,000)
KeywordsDNA amplification / Thermostable enzyme / Lyophilization / Pyruvate kinase
Outline of Research at the Start

In this study, recombinant enzymes used in RPA for detection of SARS-CoV-2 DNA and RNA and other pathogens will be prepared. Glycerol will be removed from the RPA enzyme solutions and lyophilized. Optimization of lyophilized reagents including trehalose concentrations will be performed. Storage conditions and sensitivity of lyophilized reagents will be evaluated. Finally, a field survey will be carried out in Kenya.

Outline of Annual Research Achievements

My research focused on establishing an isothermal recombinase polymerase amplification (RPA), a method conducted at around 41°C, utilizing recombinase, single-stranded DNA binding protein, strand-displacing DNA polymerase, and an ATP regenerating enzyme. I engineered a pyruvate kinase (Tma-PK) from thermophilic bacterium Thermotoga maritima as the ATP regenerating enzyme in RPA. I successfully optimized lyophilization conditions for RPA. The lyophilized RPA reagents remained stable for over 28 days at room temperature. RPA reagents containing Tma-PK exhibited superior performance to those with human PK suggesting that thermostable enzymes are preferable to mesophilic ones in RPA. I disseminated these findings in two domestic conferences and published two peer-reviewed articles.

Report

(1 results)
  • 2023 Annual Research Report
  • Research Products

    (5 results)

All 2024 2023

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (2 results) Funded Workshop (1 results)

  • [Journal Article] Achieving unprecedented stability in lyophilized recombinase polymerase amplification with thermostable pyruvate kinase from Thermotoga maritima2024

    • Author(s)
      Juma Kevin Maafu、Murakami Yuto、Morimoto Kenta、Takita Teisuke、Kojima Kenji、Suzuki Koichiro、Yanagihara Itaru、Ikuta Soichiro、Fujiwara Shinsuke、Yasukawa Kiyoshi
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: S1389-1723 Issue: 1 Pages: 112-119

    • DOI

      10.1016/j.jbiosc.2024.04.003

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recombinase polymerase amplification using novel thermostable strand-displacing DNA polymerases from Aeribacillus pallidus and Geobacillus zalihae2023

    • Author(s)
      Juma Kevin Maafu、Inoue Eisuke、Asada Kengo、Fukuda Wakao、Morimoto Kenta、Yamagata Masaya、Takita Teisuke、Kojima Kenji、Suzuki Koichiro、Nakura Yukiko、Yanagihara Itaru、Fujiwara Shinsuke、Yasukawa Kiyoshi
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 135 Issue: 4 Pages: 282-290

    • DOI

      10.1016/j.jbiosc.2023.01.009

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Presentation] Recombinase polymerase amplification using novel thermostable strand-displacing DNA polymerases from Aeribacillus pallidus and Geobacillus zalihae2023

    • Author(s)
      Juma Kevin Maafu、Inoue Eisuke、Asada Kengo、Fukuda Wakao、Morimoto Kenta、Yamagata Masaya、Takita Teisuke、Kojima Kenji、Suzuki Koichiro、Nakura Yukiko、Yanagihara Itaru、Fujiwara Shinsuke、Yasukawa Kiyoshi
    • Organizer
      The 96th Annual Meeting of the Japanese Biochemical Society, JBS2023
    • Related Report
      2023 Annual Research Report
  • [Presentation] Recombinase polymerase amplification using novel thermostable strand-displacing DNA polymerases from Aeribacillus pallidus and Geobacillus zalihae2023

    • Author(s)
      Juma Kevin Maafu、Inoue Eisuke、Asada Kengo、Fukuda Wakao、Morimoto Kenta、Yamagata Masaya、Takita Teisuke、Kojima Kenji、Suzuki Koichiro、Nakura Yukiko、Yanagihara Itaru、Fujiwara Shinsuke、Yasukawa Kiyoshi
    • Organizer
      100th Anniversary International Conference of Faculty/Graduate School of Agriculture, Kyoto University
    • Related Report
      2023 Annual Research Report
  • [Funded Workshop] 100th Anniversary International Conference of Faculty/Graduate School of Agriculture, Kyoto University2023

    • Related Report
      2023 Annual Research Report

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Published: 2023-04-26   Modified: 2024-12-25  

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