• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Molecular Design of Biocatalysts for Hydroxylation of Small Alkanes

Research Project

Project/Area Number 24225004
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionNagoya University

Principal Investigator

Watanabe Yoshihito  名古屋大学, 物質科学国際研究センター, 教授 (10201245)

Co-Investigator(Renkei-kenkyūsha) SHOJI Osami  名古屋大学, 理学研究科, 准教授 (90379587)
Project Period (FY) 2012-05-31 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥222,430,000 (Direct Cost: ¥171,100,000、Indirect Cost: ¥51,330,000)
Fiscal Year 2016: ¥36,010,000 (Direct Cost: ¥27,700,000、Indirect Cost: ¥8,310,000)
Fiscal Year 2015: ¥36,400,000 (Direct Cost: ¥28,000,000、Indirect Cost: ¥8,400,000)
Fiscal Year 2014: ¥36,140,000 (Direct Cost: ¥27,800,000、Indirect Cost: ¥8,340,000)
Fiscal Year 2013: ¥36,140,000 (Direct Cost: ¥27,800,000、Indirect Cost: ¥8,340,000)
Fiscal Year 2012: ¥77,740,000 (Direct Cost: ¥59,800,000、Indirect Cost: ¥17,940,000)
Keywordsヘム酵素 / シトクロムP450 / ガス状アルカン / ベンゼン / 過酸化水素 / 基質特異性 / 酸化反応 / 金属酵素 / 触媒 / 水酸化反応 / 結晶構造解析 / 疑似基質 / エタン / フッ素化合物 / フェリチン / フェノール / ヘム蛋白質 / 不斉酸化反応 / 金属錯体 / 長鎖脂肪酸
Outline of Final Research Achievements

Cytochrome P450BM3 (P450BM3) isolated from Bacillus megaterium catalyzes the hydroxylation of long-alkyl-chain fatty acids. We have demonstrated that even wild-type P450BM3 can catalyze the hydroxylation of gaseous alkanes such as ethane and propane as well as benzene by using perfluorinated carboxylic acids (PFCs) as decoy molecules. We also have demonstrated that N-perfluoroacyl amino acids strongly activate wild-type P450BM3 for the hydroxylation of inert alkanes. Furthermore, we showed that substrate-binding-state mimics of hydrogen peroxide-dependent cytochrome P450s prepared by one-point mutagenesis are able to catalyze monooxygenation of non-native substrates. The same mutation was also effective in introducing peroxygenase activity into P450BM3 and P450cam, indicating that a variety of peroxygenases based on P450s can be constructed by one-point mutagenesis.

Assessment Rating
Verification Result (Rating)

A-

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(9 results)
  • 2017 Research Progress Assessment (Verification Result) ( PDF )
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (49 results)

All 2017 2016 2015 2014 2013 2012 Other

All Journal Article (21 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 21 results,  Open Access: 8 results,  Acknowledgement Compliant: 6 results) Presentation (10 results) (of which Int'l Joint Research: 4 results,  Invited: 10 results) Book (6 results) Remarks (11 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Monooxygenation of Nonnative Substrates Catalyzed by Bacterial Cytochrome P450s Facilitated by Decoy Molecules2017

    • Author(s)
      O. Shoji, Y. Watanabe
    • Journal Title

      Chemistry Letters

      Volume: 46 Issue: 3 Pages: 278-288

    • DOI

      10.1246/cl.160963

    • NAID

      130005436531

    • ISSN
      0366-7022, 1348-0715
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Use of apomyoglobin to gently remove heme from a H2O2-dependent cytochrome P450 and allow its reconstitution2017

    • Author(s)
      S.C. Chien, O. Shoji, Y. Morimoto, Y. Watanabe
    • Journal Title

      New J. Chem.

      Volume: 41 Issue: 1 Pages: 302-307

    • DOI

      10.1039/c6nj02882a

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Substrate-Binding-State Mimic of H2O2-Dependent Cytochrome P450 Produced by One-point Mutagenesis and Peroxygenation of Non-native Substrates2016

    • Author(s)
      O. Shoji, T. Fujishiro, K. Nishio, Y. Kano, H. Kimoto, S. Chien, H. Onoda, A. Muramatsu, S. Tanaka, A. Hori, H. Sugimoto, Y. Shiro, Y. Watanabe
    • Journal Title

      Catal. Sci. Tech.

      Volume: 6 Issue: 15 Pages: 5806-5811

    • DOI

      10.1039/c6cy00630b

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Improved oxidation of aromatic and aliphatic hydrocarbons using rate enhancing variants of P450Bm3 in combination with decoy molecules2016

    • Author(s)
      S. D. Munday, O. Shoji, Y. Watanabe, L. L. Wong, S. G. Bell
    • Journal Title

      Chem. Commun.

      Volume: 52 Issue: 5 Pages: 1036-1039

    • DOI

      10.1039/c5cc09247g

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Construction of an enterobactin analogue with symmetrically arranged monomer subunits of ferritin2015

    • Author(s)
      H. Nakajima, M. Kondou, T. Nakane, S. Abe, T. Nakao, Y. Watanabe, T. Ueno
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 93 Pages: 16609-16612

    • DOI

      10.1039/c5cc06904a

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Acetate anion-triggered peroxygenation of non-native substrates by wild-type cytochrome P450s2015

    • Author(s)
      H. Onoda, O. Shoji, Y. Watanabe
    • Journal Title

      Dalton Trans

      Volume: 44 Issue: 34 Pages: 15316-15323

    • DOI

      10.1039/c5dt00797f

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effect of Nitric Oxide on VnfA, a transcriptional activator of VFe-nitrogenase in Azotobacter vinelandii2015

    • Author(s)
      Y. Miura, K. Yoshimitsu, N. Takatani, Y. Watanabe, H. Nakajima,
    • Journal Title

      J. Biochem.

      Volume: 157 Issue: 5 Pages: 365-375

    • DOI

      10.1093/jb/mvu083

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Highly efficient hydroxylation of gaseous alkanes at reduced temperature catalyzed by cytochrome P450BM3 assisted by decoy molecules2015

    • Author(s)
      N. Kawakami, Z. Cong, O. Shoji, Y. Watanabe
    • Journal Title

      J. Porphyrins Phthalocyanines

      Volume: 19 Issue: 01-03 Pages: 329-334

    • DOI

      10.1142/s1088424615500145

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Activation of Wild-type Cytochrome P450BM3 by the Next Generation of Decoy Molecules: Enhanced Hydroxylation of Gaseous Alkanes and Crystallographic Evidence2015

    • Author(s)
      Z. Cong, O. Shoji, C. Kasai, N. Kawakami, H. Sugimoto, Y. Shiro, Y. Watanabe
    • Journal Title

      ACS Catalysis

      Volume: 5 Issue: 1 Pages: 150-156

    • DOI

      10.1021/cs501592f

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Bringing out the potential of wild-type cytochrome P450s using decoy molecules: Oxygenation of nonnative substrates by bacterial cytochrome P450s2015

    • Author(s)
      O. Shoji, Y. Watanabe
    • Journal Title

      Isr. J. Chem.

      Volume: 55 Issue: 1 Pages: 529-539

    • DOI

      10.1002/ijch.201400096

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Azurin-DNA Conjugate with the Binding Motif of a Transcriptional Regulator, CooA: CO-dependent Modulation of the Electron-transfer Reaction2014

    • Author(s)
      H. Nakajima, S. Miyazaki, T. Itoh, M. Hayamura, Y. Watanabe
    • Journal Title

      Chemistry Letters

      Volume: 43 Issue: 8 Pages: 1204-1206

    • DOI

      10.1246/cl.140284

    • NAID

      130004427118

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Peroxygenase reactions catalyzed by cytochromes P4502014

    • Author(s)
      O. Shoji, Y. Watanabe
    • Journal Title

      J. Biol. Inorg. Chem.

      Volume: 19 Issue: 4-5 Pages: 529-539

    • DOI

      10.1007/s00775-014-1106-9

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] An in vivo Inhibitory Effect on the Heme Uptake of Pseudomonas aeruginosa by Its Hemophore (HasAp) Carrying Synthetic Metal Complexes.2014

    • Author(s)
      Shirataki, C.; Shoji, O.; Terada, M.; Ozaki, S.; Sugimoto, H.; Shiro, Y.; Watanabe, Y.
    • Journal Title

      Angw. Chem. Int. Ed.

      Volume: 53 Issue: 11 Pages: 2862-2866

    • DOI

      10.1002/anie.201307889

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electronic Control of Discrimination between O2 and CO in Myoglobin Lacking the Distal Histidine Residue2013

    • Author(s)
      R. Nishimura, T. Shibata, I. Ishigami, T. Ogura, H. Tai, S. Nagao, T. Matsuo, S Hirota, O. Shoji, Y. Watanabe, K. Imai, S. Neya, A. Suzuki, Y. Yamamoto
    • Journal Title

      Inorg. Chem.

      Volume: 53 Issue: 2 Pages: 1091-1099

    • DOI

      10.1021/ic402625s

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of a MnIV Acylperoxo Complex and Its Monooxidation Ability2013

    • Author(s)
      Kikunaga, Takahiro; Matsumoto, Takahiro; Ohta, Takehiro; Nakai, Hidetaka; Naruta, Yoshinori; Ahn, Kwang-Hyun; Watanabe, Yoshihito; Ogo, Seiji
    • Journal Title

      Chem. Commun.

      Volume: 49(75) Issue: 75 Pages: 8356-8358

    • DOI

      10.1039/c3cc43447h

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Selective Hydroxylation of Benzene to Phenol by Wild-type Cytochrome P450BM3 Assisted by Decoy Molecules2013

    • Author(s)
      O. Shoji, T. Kunimatsu, N. Kawakami, Y. Watanabe
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 52 Issue: 26 Pages: 6606-6610

    • DOI

      10.1002/anie.201300282

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct Hydroxylation of Primary Carbons in Small Alkanes by Wild-type Cytochrome P450BM3 Containing Perfluorocarboxylic Acids as Decoy Molecules2013

    • Author(s)
      N. Kawakami, O. Shoji, Y. Watanabe
    • Journal Title

      Chem. Sci.

      Volume: 4 Issue: 6 Pages: 2344-2348

    • DOI

      10.1039/c3sc50378j

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermodynamic effects of the alteration of the axial ligand on the unfolding of the thermostable cytochrome c2013

    • Author(s)
      Rabindra KB., Nakajima, H., Jitumani R., Watanabe, Y., Mazumdar, S.
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 8 Pages: 1373-1384

    • DOI

      10.1021/bi300982v

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-step reconstitution of apo-hemoproteins at the disruption stage of Escherichia coli cells2012

    • Author(s)
      N. Kawakami, O. Shoji, Y. Watanabe
    • Journal Title

      ChemBioChem

      Volume: 13 Issue: 14 Pages: 2045-2047

    • DOI

      10.1002/cbic.201200446

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chiral Substrate Analogues Assisted Stereoselective Epoxidation Catalyzed by H2O2-Dependent Cytochrome P450SPα2012

    • Author(s)
      T. Fujishiro, O. Shoji, N. Kawakami, T. Watanabe, H. Sugimoto, Y. Shiro, Y. Watanabe
    • Journal Title

      Chemistry-An Asian Journal

      Volume: 7 Issue: 10 Pages: 2286-2293

    • DOI

      10.1002/asia.201200250

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Coordination Chemistry in Protein Cages: From Heme Proteins to Organometallo-enzymes2012

    • Author(s)
      Y. Watanabe
    • Journal Title

      Bulletin of Japan Society of Coordination Chemistry

      Volume: 59 Issue: 0 Pages: 11-25

    • DOI

      10.4019/bjscc.59.11

    • NAID

      130002145019

    • ISSN
      1882-6954, 1883-1737
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Decoy Systems for Small Organic Molecule Oxygenation by P450S2016

    • Author(s)
      Y. Watanabe
    • Organizer
      AsBIC8
    • Place of Presentation
      Auckland, Newzealand
    • Year and Date
      2016-12-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 金属酵素を設計する2016

    • Author(s)
      渡辺芳人
    • Organizer
      生体機能関連化学部会若手の会 第28回サマースクール
    • Place of Presentation
      蒲郡
    • Year and Date
      2016-07-15
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Hydroxylation of inert organic molecules by cytochrome P450/decoy system2015

    • Author(s)
      Y. Watanabe
    • Organizer
      250th ACS National Meeting & Exposition
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2015-08-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Fine Tuning of Cytochrome P450 Activities2015

    • Author(s)
      Y. Watanabe, O. Shoji
    • Organizer
      ICBIC17
    • Place of Presentation
      Beijing, China
    • Year and Date
      2015-07-20
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of P450s for Artificial Substrate Oxidation2015

    • Author(s)
      Y. Watanabe
    • Organizer
      KMB 2015. 42nd Annual Meeting & International Symposium
    • Place of Presentation
      Gyeongju, South Korea
    • Year and Date
      2015-06-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Hydroxylation of Inert Organic Molecules by Cytochrome P450/Decoy Systems2014

    • Author(s)
      Y. Watanabe, O. Shoji
    • Organizer
      AsBIC7
    • Place of Presentation
      Gold Coast, Queensland, Australia.
    • Year and Date
      2014-11-30 – 2014-12-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular Design of Proteins for Future Application2013

    • Author(s)
      Y. Watanabe
    • Organizer
      The Symposium on Modern Trends In Inorganic Chemistry-XV (MTIC- XV)
    • Place of Presentation
      Roorkee, India
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Hydroxylation of Inert Organic Molecules by Cytochrome P450s Assisted by Decoy Molecules2013

    • Author(s)
      Y. Watanabe, O Shoji
    • Organizer
      The 2nd Japan-France Coordination Chemistry Symposium
    • Place of Presentation
      Nara, Japan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Hydroxylation of Inert Organic Molecules by Cytochrome P450s Assisted by Decoy Molecules2013

    • Author(s)
      Y. Watanabe
    • Organizer
      The 15th Asian Chemical Congress
    • Place of Presentation
      Sentosa Island, Singapore
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Construction of Metalloenzymes: Catalysts Embedded in Proteins2013

    • Author(s)
      Y. Watanabe
    • Organizer
      the 4th Research Symposium on Petrochemical and Materials Technology and the 18th PPC Symposium on Petroleum, Petrochemicals, and Polymers
    • Place of Presentation
      Bangkok, Thailand
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] Monooxygenase, Peroxidase and Peroxygenase Properties and Mechanisms of Cytochrome P450, Advances in Experimental Medicine and Biology2015

    • Author(s)
      O. Shoji, Y. Watanabe
    • Publisher
      Springer International Publishing Switzerland
    • Related Report
      2014 Annual Research Report
  • [Book] Fifty Years of Cytochrome P450 Research, "Peroxygenase reactions catalyzed by cytochromes P450"2014

    • Author(s)
      O. Shoji, Y. Watanabe
    • Total Pages
      18
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report
  • [Book] 生物工学会誌 8月号 「頑固な酵素」を巧みに騙す」2014

    • Author(s)
      荘司長三、渡辺芳人
    • Total Pages
      4
    • Publisher
      公益社団法人 日本生物工学会
    • Related Report
      2014 Annual Research Report
  • [Book] 配管技術 12月号 「ベンゼンをフェノールに一段階で変換する新規バイオ触媒の開発」2013

    • Author(s)
      荘司長三、渡辺芳人
    • Total Pages
      5
    • Publisher
      日本工業出版
    • Related Report
      2013 Annual Research Report
  • [Book] 月刊「化学」9月号 「酵素を“誤作動”させて行う有機合成―― 酵素反応を有機化学に利用するための反応制御」2013

    • Author(s)
      渡辺芳人、荘司長三
    • Total Pages
      6
    • Publisher
      ㈱化学同人
    • Related Report
      2013 Annual Research Report
  • [Book] Coordination Chemistry in Protein Cages: Principles, Design, and Applications2013

    • Author(s)
      T. Ueno and Y. Watanabe (Eds)
    • Total Pages
      416
    • Publisher
      Wiley, John & Sons, Incorporated
    • Related Report
      2013 Annual Research Report
  • [Remarks] 名古屋大学大学院理学研究科生物無機化学研究室

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 名古屋大学理学研究科生物無機化学研究室

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/

    • Related Report
      2014 Annual Research Report
  • [Remarks] ベンゼンをフェノールに一段階で変換するバイオ触媒の開発

    • URL

      http://www.aip.nagoya-u.ac.jp/public/nu_research_ja/highlights/detail/0000769.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 論文

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/paper.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 教員 学会

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/society_t.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 特許

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/patent.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 報道・関連記事

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/pressrelease.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 論文

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/paper.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 教員学会発表

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/society_t.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 特許

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/patent.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 生物無機化学研究室 研究業績 報道・関連記事

    • URL

      http://bioinorg.chem.nagoya-u.ac.jp/publications/pressrelease.html

    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] 細菌の増殖抑制2014

    • Inventor(s)
      荘司長三、渡辺芳人、白瀧千夏子、岩井佑介
    • Industrial Property Rights Holder
      荘司長三、渡辺芳人、白瀧千夏子、岩井佑介
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-061575
    • Filing Date
      2014-03-25
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2012-11-27   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi