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Dynamics of microbial community genomes at time-series stations in the subarctic and subtropical gyres of the western North Pacific

Research Project

Project/Area Number 24241002
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Environmental dynamic analysis
Research InstitutionThe University of Tokyo

Principal Investigator

HAMASAKI KOJI  東京大学, 大気海洋研究所, 准教授 (80277871)

Co-Investigator(Kenkyū-buntansha) TAKAMI Hideto  国立研究開発法人海洋研究開発機構, 海底資源研究開発センター, 上席研究員 (70359165)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥46,800,000 (Direct Cost: ¥36,000,000、Indirect Cost: ¥10,800,000)
Fiscal Year 2015: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Fiscal Year 2014: ¥13,130,000 (Direct Cost: ¥10,100,000、Indirect Cost: ¥3,030,000)
Fiscal Year 2013: ¥11,310,000 (Direct Cost: ¥8,700,000、Indirect Cost: ¥2,610,000)
Fiscal Year 2012: ¥15,210,000 (Direct Cost: ¥11,700,000、Indirect Cost: ¥3,510,000)
Keywords微生物 / メタゲノム / 西部北太平洋 / 海洋細菌 / 時系列観測 / 多様性 / メタゲノミクス / 細菌 / 古細菌
Outline of Final Research Achievements

The western North Pacific is one of the most productive area in the ocean and thus important for carbon sequestration by strong activity of the Biological Carbon Pump. Here, we report temporal variability of structures and metabolic potentials of surface seawater microbial communities collected from two contrasting time-series stations, K2 and S1, in the subarctic and subtropical gyres, respectively. This is the first report of metagenomic comparison of temporal dynamics in open ocean microbial communities of subtropical and subarctic areas, which has provided invaluable data and fruitful outcomes. We have also contributed to develop a next generation bioinformatics tool of metagenomics, so-called Metabolic And Physiological potentiaL Evaluator (MAPLE), and presented usefulness of this system as a novel tool in analyzing ecosystem dynamics.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (37 results)

All 2016 2015 2014 2013 2012 Other

All Journal Article (10 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (24 results) (of which Int'l Joint Research: 3 results,  Invited: 6 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Active populations of rare microbes in oceanic environments as revealed by bromodeoxyuridine incorporation and 454 tag sequencing2016

    • Author(s)
      Koji Hamasaki, Akito Taniguchi, Yuya Tada, Ryo Kaneko, and Takeshi Miki
    • Journal Title

      Gene

      Volume: 576 Issue: 2 Pages: 650-656

    • DOI

      10.1016/j.gene.2015.10.016

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Depth-dependent and seasonal variability in archaeal community structure in the subarctic and subtropical western North Pacific2016

    • Author(s)
      Ryo Kaneko, Toshi Nagata, Shotaro Suzuki, Koji Hamasaki
    • Journal Title

      Journal of Oceanography

      Volume: in press

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean2016

    • Author(s)
      Takuhei Shiozaki, Minoru Ijichi, Kazuo Isobe, Fuminori Hashihama, Ken-ichi Nakamura, Makoto Ehama, Ken-ichi Hayashizaki, Kazutaka Takahashi, Koji Hamasaki, Ken Furuya
    • Journal Title

      The ISME Journal

      Volume: - Issue: 9 Pages: 1-14

    • DOI

      10.1038/ismej.2016.18

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 細菌プランクトンの動態と光栄養2016

    • Author(s)
      浜崎恒二
    • Journal Title

      月刊海洋特集:光とプランクトン研究―現状と展望―

      Volume: 543 Pages: 6-14

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Fabibacter misakiensis sp. nov., a novel marine bacterium isolated from the coastal surface water in Japan2015

    • Author(s)
      Shu-Kuan Wong; Sanghwa Park; Jung-Sook Lee; Keun Chul Lee; Hiroshi Xavier Chiura; Kazuhiro Kogure; Koji Hamasaki
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 65 Issue: Pt_10 Pages: 3276-3280

    • DOI

      10.1099/ijsem.0.000405

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Spatial distribution and cell size of aerobic anoxygenic phototrophic bacteria in the Uwa Sea, Japan2015

    • Author(s)
      Sato-Takabe, Y., S. Suzuki, R. Shishikura, K. Hamasaki, Y. Tada, T. Kataoka, T. Yokokawa, N. Yoshie, S. Suzuki
    • Journal Title

      J. Oceanogr.

      Volume: 71 Issue: 1 Pages: 151-159

    • DOI

      10.1007/s10872-014-0267-z

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Typhoon-induced response of phytoplankton and bacteria in temperate coastal waters.2015

    • Author(s)
      Tsuchiya, K., Sano, T., Kawasaki, N., Fukuda, H., Tomioka, N., Hamasaki, K., Tada, Y., Shimode, S., Toda, T. and Imai, A
    • Journal Title

      Estuarine, Coastal and Shelf Science

      Volume: 167 Pages: 458-465

    • DOI

      10.1016/j.ecss.2015.10.026

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] New radioisotope-free method for measuring bacterial production using [15N5]-2′-deoxyadenosine and liquid chromatography mass spectrometry (LC–MS) in aquatic environments2015

    • Author(s)
      Tsuchiya, K., Sano, T., Kawasaki, N., Fukuda, H., Tomioka, N., Hamasaki, K., Tada, Y., Shimode, S., Toda, T. and Imai, A.
    • Journal Title

      Journal of Oceanography

      Volume: 71 Issue: 6 Pages: 675-683

    • DOI

      10.1007/s10872-015-0310-8

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ecological study of bacterial populations related to biogenic gas transformation in marine environments2014

    • Author(s)
      Hamasaki, K., Kaneko, R., Mouri, A., Tada, Y., Kasamatsu-Takasawa, N., Nagao, I.
    • Journal Title

      Western Pacific Air-Sea Interaction Study (Eds. M. Uematsu, Y. Yokouchi, Y. W. Watanabe, S. Takeda, and Y. Yamanaka)

      Volume: 0 Pages: 203-209

    • DOI

      10.5047/w-pass.a03.004

    • Related Report
      2014 Annual Research Report
    • Open Access
  • [Journal Article] Evaluation method for the potential functionome harbored in the genome and metagenome.2012

    • Author(s)
      Takami H, Taniguchi T, Moriya Y, Kuwahara T, Kanehisa M, Goto S.
    • Journal Title

      BMC Genomics

      Volume: 13 Issue: 1 Pages: 699-699

    • DOI

      10.1186/1471-2164-13-699

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 太平洋における細菌プランクトンの多様性と機能2016

    • Author(s)
      浜崎恒二
    • Organizer
      第5回JAMBIOフォーラム
    • Place of Presentation
      筑波大学東京キャンパス文京校舎,東京
    • Year and Date
      2016-02-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Diversity, community structure and functional potential of planktonic bacteria in the Pacific Ocean: insights from the NEOPS transoceanic cruises2015

    • Author(s)
      Koji Hamasaki, Shotaro Suzuki, Yoshitoshi Ogura, Tetsuya Hayashi, Hiroshi Mori, Ken Kurokawa, Wataru Arai, Hideto Takami
    • Organizer
      International symposium: “Developing new ocean provinces on their biogeochemistry and ecosystems”
    • Place of Presentation
      東京大学本郷キャンパス,東京
    • Year and Date
      2015-12-03
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Current systems shape bacterial community structure in the Sanriku coastal area, northwestern Japan2015

    • Author(s)
      Ryo Kaneko, Yoko Kobayashi, Koji Hamasaki, Takuhei Shiozaki, and Kazuhiro Kogure
    • Organizer
      7th Japan-Taiwan-Korea International Symposium on Microbial Ecology
    • Place of Presentation
      土浦亀城プラザ,茨城
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Isolation and characterization of rhodopsin containing Mesoflavibacter misakiensis SK-14 sp, nov. from sea surface microlayer at the coast of Misaki, Japan2015

    • Author(s)
      Sanghwa Park, Shu-Kuan Wong, Jung-Sook Lee, Keun Chul Lee, Suk Won Kim, Koji Hamasaki and Kazuhiro Kogure
    • Organizer
      7th Japan-Taiwan-Korea International Symposium on Microbial Ecology
    • Place of Presentation
      土浦亀城プラザ,茨城
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 環境DNAから探る新たな海洋像2015

    • Author(s)
      浜崎恒二
    • Organizer
      マリノフォーラム21サロン
    • Place of Presentation
      マリノフォーラム21,東京
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Characterizing the biological and microbial community dynamics in the coastal sea surface microlayer2015

    • Author(s)
      Shu-Kuan Wong, Shotaro Suzuki, Yingshun Cui, Ryo Kaneko, Kazuhiro Kogure, Koji Hamasaki
    • Organizer
      日本地球惑星科学連合2015年大会
    • Place of Presentation
      幕張メッセ,千葉
    • Year and Date
      2015-05-24
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Presentation] Comparative study for ecosystem and biogeochemistry at comparative time-series stations in the northwestern Pacific subarctic gyre and subtropical region: K2S1 project2015

    • Author(s)
      Makio Honda and the K2S1 project Team
    • Organizer
      EGU General Assembly
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2015-04-12 – 2015-04-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] Comparative study for ecosystem and biogeochemistry at comparative time-series stations in the northwestern Pacific subarctic gyre and subtropical region: K2S1 project2015

    • Author(s)
      Makio Honda and the K2S1 project Team
    • Organizer
      EGU General Assembly 2015
    • Place of Presentation
      Viena, Austria
    • Year and Date
      2015-04-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 安定同位体・LC-MS を用いた細菌生産測定法2015

    • Author(s)
      土屋健司, 戸田龍樹, 川崎伸之, 佐野友春, 冨岡典子, 今井章雄, 福田秀樹, 浜崎恒二, 多田雄哉, 下出信次
    • Organizer
      日本海洋学会春季大会
    • Place of Presentation
      東京海洋大学,品川
    • Year and Date
      2015-03-22 – 2015-03-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 気候変動に伴う生態系・物質循環の変動とフィードバック:K2S1 プロジェクトまとめ2015

    • Author(s)
      本多牧生・松本和彦・藤木徹一・Eko Siswanto・笹岡晃征・川上創・脇田昌英・喜多村稔・笹井義 一・Sherwood L. Smith・橋岡豪人・吉川知里・木元克典・渡邉修一・三野義尚・ 鋤柄千穂・阿部理、小針統、永田俊・浜崎恒二・福田秀樹・金子亮、内宮万里央、才野敏郎
    • Organizer
      ブルーアース2015
    • Place of Presentation
      東京海洋大学,品川
    • Year and Date
      2015-03-19 – 2015-03-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] 放射性同位体を全く使用しないバクテリア生産量測定法の開発2015

    • Author(s)
      土屋健司, 戸田龍樹,川崎伸之,佐野友春, 冨岡典子, 今井章雄,福田秀樹, 浜崎恒二,多田雄哉,下出信次
    • Organizer
      第49回日本水環境学会年会
    • Place of Presentation
      金沢大学, 金沢
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Spatiotemporal dynamics of planktonic archaea in the western North Pacific Ocean2015

    • Author(s)
      Ryo Kaneko, Shotaro Suzuki, Toshi Nagata, Makio Honda, Koji Hamasaki
    • Organizer
      ASLO meeting
    • Place of Presentation
      Granada, Spain
    • Year and Date
      2015-02-22 – 2015-02-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 時系列メタゲノミクスでみる西部北太平洋の微生物群集代謝機能2014

    • Author(s)
      浜崎恒二,金子亮,荒井渉,豊田敦,藤山秋佐夫,本多牧生,高見英人
    • Organizer
      環境微生物学会合同大会
    • Place of Presentation
      浜松アクトシティコングレスセンター,浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Variability of bacterioplankton metabolic potentials in the western North Pacific time-series stations, K2 and S12014

    • Author(s)
      Koji Hamasaki, Ryo Kaneko, Wataru Arai, Atsushi Toyoda, Asao Fujiyama, Makio Honda, Hideto Takami
    • Organizer
      15th ISME meeting
    • Place of Presentation
      Soul, Korea
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Changes in Archaeal Community Structure in the Sea Surface Microlayer2014

    • Author(s)
      Shu-Kuan Wong, Ryo Kaneko, Shotaro Suzuki, Yingshun Cui, Kazuhiro Kogure, Koji Hamasaki
    • Organizer
      15th ISME meeting
    • Place of Presentation
      Soul, Korea
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] パイロシーケンシングによる西部北太平洋時系列観測点K2, S1における細菌群集動態の解析2014

    • Author(s)
      金子亮・内宮万里央・福田秀樹・鈴木翔太郎・小川浩史・永田俊・本多牧生・浜崎恒二
    • Organizer
      ブルーアース2014
    • Place of Presentation
      東京海洋大学,東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Variability of bacterioplankton metabolic potentials in the western North Pacific time-series stations, K2 and S12014

    • Author(s)
      Koji Hamasaki, Ryo Kaneko, Wataru Arai, Atsushi Toyoda, Asao Fujiyama, Makio Honda, Hideto Takami
    • Organizer
      15th International Symposium on Microbial Ecology
    • Place of Presentation
      Soul, South Korea
    • Related Report
      2013 Annual Research Report
  • [Presentation] Comparison of particle-associated and free-living archaeal communities in the western North Pacific Ocean2013

    • Author(s)
      Ryo Kaneko, Uchimiya Mario, Fukuda Hideki, Suzuki Shoutaro, Ogawa Hiroshi, Nagata Toshi, Honda Makio, Hamasaki Koji
    • Organizer
      The 13th Symposium on Aquatic Microbial Ecology
    • Place of Presentation
      Stresa, Italy
    • Related Report
      2013 Annual Research Report
  • [Presentation] Metagenomic evaluation of metabolic potential in microbial communities: stability and variability in the western North Pacific2013

    • Author(s)
      Koji Hamasaki, Ryo Kaneko, Hideto Takami
    • Organizer
      International Symposium on Aquatic Metagenomics
    • Place of Presentation
      Kitasato University,Tokyo
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Spatiotemporal dynamics of bacterioplankton in the Pacific Ocean: clues to ecosystem functioning2013

    • Author(s)
      Koji Hamasaki, Ryo Kaneko, Shotaro Suzuki, Yingshun Cui
    • Organizer
      The 5th Taiwan-Korea-Japan International Symposium on Microbial Ecology
    • Place of Presentation
      Taipei, Taiwan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 西部北太平洋中深層における懸濁粒子付着微生物の群集構造解析2013

    • Author(s)
      金子亮・内宮万里央・福田秀樹・鈴木翔太郎・小川浩史・永田俊・浜崎恒二
    • Organizer
      日本海洋学会春季大会シンポジウム
    • Place of Presentation
      東京海洋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 西部北太平洋における微生物群集の時空間変動2013

    • Author(s)
      金子亮・内宮万里央・福田秀樹・鈴木翔太郎・小川浩史・永田俊・浜崎恒二
    • Organizer
      ブルーアース
    • Place of Presentation
      東京海洋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Temporal dynamics of the microbial comunity structure in dark ocean of the western north pacific2012

    • Author(s)
      Kaneko, R., Uchimiya, M., Fukuda, H., Suzuki, S., Ogawa, H., Nagata, T., Honda, M., Hamasaki, K.
    • Organizer
      14th ISME meeting
    • Place of Presentation
      Copenhagen
    • Related Report
      2012 Annual Research Report
  • [Presentation] 太平洋における微生物プランクトンの多様性・群集構造・機能

    • Author(s)
      浜崎恒二
    • Organizer
      京都大学生態学研究センターセミナー
    • Place of Presentation
      京都大学,京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] 水圏微生物学の基礎2015

    • Author(s)
      濵﨑 恒二 , 木暮 一啓 , 澤 辺智雄 , 澤辺 桃子, 鈴木 聡, 砂村 倫成, 永田 俊, 春田 伸, 福田 秀樹, 美野 さやか, 和田 実
    • Total Pages
      261
    • Publisher
      恒星社厚生閣
    • Related Report
      2015 Annual Research Report
  • [Book] 環境と微生物の事典2014

    • Author(s)
      日本微生物生態学会(編)
    • Total Pages
      432
    • Publisher
      朝倉書店
    • Related Report
      2014 Annual Research Report
  • [Remarks] メタゲノム代謝・複合系モジュール自動解析システム (MAPLE) 公開版

    • URL

      http://www.genome.jp/tools/maple/help.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2013-05-15   Modified: 2019-07-29  

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