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Molecular mechanisms of mutagenesis by ions beams, and development of new technology for highly mutagenesis frequency in plant

Research Project

Project/Area Number 24241028
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Quantum beam science
Research InstitutionTohoku University

Principal Investigator

HIDEMA JUN  東北大学, 生命科学研究科, 准教授 (20250855)

Co-Investigator(Kenkyū-buntansha) SAKAMOTO Ayako  独立行政法人日本原子力研究開発機構, 原子力研究部門量子ビーム応用研究センター, 研究主幹 (00354960)
TOKI Seiichi  独立行政法人農業生物資源研究所, 農業生物先端ゲノム研究センター, ユニット長 (80212067)
SAIKA Hiroaki  独立行政法人農業生物資源研究所, 農業生物先端ゲノム研究センター, 主任研究員 (20435613)
ENDO Masaki  独立行政法人農業生物資源研究所, 農業生物先端ゲノム研究センター, 主任研究員 (40546371)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥47,320,000 (Direct Cost: ¥36,400,000、Indirect Cost: ¥10,920,000)
Fiscal Year 2014: ¥14,300,000 (Direct Cost: ¥11,000,000、Indirect Cost: ¥3,300,000)
Fiscal Year 2013: ¥13,130,000 (Direct Cost: ¥10,100,000、Indirect Cost: ¥3,030,000)
Fiscal Year 2012: ¥19,890,000 (Direct Cost: ¥15,300,000、Indirect Cost: ¥4,590,000)
Keywords突然変異育種 / DNA修復 / DNA損傷 / DNA二重鎖切断 / 非相同末端結合 / バランサークロモソーム / イオンビーム / 変異誘発機構 / イネ / シロイヌナズナ / 相同・非相同組換え / ゲノム不安定性 / 変異誘発
Outline of Final Research Achievements

Ion beams with high-linear energy transfer induce large chromosome alterations, and thus are effective tools for mutation breeding to create novel characters on crops. The aim of this study is to improve mutagenesis frequency by ions beams in order to generate effectively novel mutants. We investigated molecular mechanisms of mutagenesis by heavy ions beams. We elucidated that (1) mutagenesis by the ion beam is efficiently produced by induction of DNA double strand breaks (DSBs) among ion beam-induced DNA damages, (2) the activity of ligase 4, which is one of the key DSBs repair enzymes in non-homologous end-joining pathway, plays an important role in mutagenesis frequency by ion-beam. These results indicated that mutagenesis frequency by ion beam is increased in ligase 4-deficient plants. Furthermore, we found that ion beams are also useful for chromosome engineering such as making balancer chromosomes that make easier to maintain a line of interest over the generation.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (48 results)

All 2015 2014 2013 2012 Other

All Journal Article (18 results) (of which Peer Reviewed: 17 results,  Acknowledgement Compliant: 10 results,  Open Access: 7 results) Presentation (26 results) (of which Invited: 14 results) Remarks (4 results)

  • [Journal Article] Establishment of monitoring methods for autophagy in rice reveals autophagic recycling of chloroplasts and root plastids during energy limitation.2015

    • Author(s)
      Izumi M, Hidema J, Wada S, Kondo E, Kurusu T, Kuchitsu K, Makino A, Ishida H.
    • Journal Title

      Plant Physiology

      Volume: 169 Issue: 4 Pages: 1307-1320

    • DOI

      10.1104/pp.114.254078

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision.2015

    • Author(s)
      Nishizawa-Yokoi A, Endo M, Ohtsuki N, Saika H, Toki S
    • Journal Title

      The Plant Journal

      Volume: 81 Issue: 1 Pages: 160-168

    • DOI

      10.1111/tpj.12693

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting2015

    • Author(s)
      Endo M, Kumagai M, Motoyama R, Sasaki-Yamagata H, Mori-Hosokawa S, Hamada M, Kanamori H, Nagamura Y, Katayose Y, Itoh T, Toki S
    • Journal Title

      Plant and Cell physiology

      Volume: 56 Issue: 1 Pages: 116-125

    • DOI

      10.1093/pcp/pcu153

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Multigene knockout utilizing off-target mutations of the CRISPR/Cas9 system in rice2015

    • Author(s)
      Endo M, Mikami M, Toki S
    • Journal Title

      Plant and Cell Physiology

      Volume: 81 Issue: 1 Pages: 41-47

    • DOI

      10.1093/pcp/pcu154

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Differential responses to high- and low-dose ultraviolet-B stress in tobacco Bright Yellow-2 cells2015

    • Author(s)
      Takahashi S, Kojo K.H, Kutsuna N, Endo M, Toki S, Isoda H, Hasezawa S
    • Journal Title

      Frontiers in Plant Science

      Volume: 6 Pages: 254-254

    • DOI

      10.3389/fpls.2015.00254

    • NAID

      120007136348

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Positive-negative-selection-mediated gene targeting in rice2015

    • Author(s)
      Shimatani Z, Nishizawa-Yokoi A, Endo M, Toki S, Terada R
    • Journal Title

      Frontiers in Plant Science

      Volume: 5 Pages: 748-748

    • DOI

      10.3389/fpls.2014.00748

    • Related Report
      2014 Annual Research Report
    • Open Access / Acknowledgement Compliant
  • [Journal Article] Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair2014

    • Author(s)
      Shuta Kunihiro, 他8名
    • Journal Title

      Planta

      Volume: 239 Issue: 5 Pages: 1101-1111

    • DOI

      10.1007/s00425-014-2042-1

    • Related Report
      2014 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transport of rice cyclobutane pyrimidine dimer (CPD) photolyase into mitochondria relies on a targeting sequence located in its C-terminal internal region.2014

    • Author(s)
      Takahashi S, Teranishi M, Izumi M, Takahashi M, Takahashi F and Hidema J.
    • Journal Title

      The Plant Journal

      Volume: 79 Issue: 6 Pages: 951-963

    • DOI

      10.1111/tpj.12598

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The non-homologous end-joining pathway is involved in stable transformation in rice2014

    • Author(s)
      Saika H, Nishizawa-Yokoi A, Toki S
    • Journal Title

      Frontiers in Plant Science

      Volume: 5 Pages: 560-560

    • DOI

      10.3389/fpls.2014.00560

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Mutational effects of γ-rays and carbon ion beams in Arabidopsis seedlings2013

    • Author(s)
      R. Yoshihara, S. Nozawa, Y. Hase, I. Narumi, J. Hidema and A. N. Sakamoto
    • Journal Title

      J. Radiat. Res.

      Volume: (in press) Issue: 4 Pages: 1050-1056

    • DOI

      10.1093/jrr/rrt007

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Abscisic acid is involved in the response of Arabidopsis mutant sad2-1 to ultraviolet-B radiation by enhancing antioxidant enzymes.2013

    • Author(s)
      Chen M, Zhang W H, Lv Z W, Zhang S L, Hidema J, Shi F M and Liu L L.
    • Journal Title

      South African Journal of Botany.

      Volume: 85 Pages: 79-86

    • DOI

      10.1016/j.sajb.2012.11.006

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification of a phosphorylation site in cyclobutane pyrimidine dimer photolyase of rice.2013

    • Author(s)
      Teranishi M, Nakamura K, Furukawa H and Hidema J.
    • Journal Title

      Plant Physiology and Biochemistry

      Volume: 63 Pages: 24-29

    • DOI

      10.1016/j.plaphy.2012.11.003

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Autophagy contributes to nighttime energy availability for growth in Arabidopsis.2013

    • Author(s)
      Izumi M, Hidema J, Makino A, Ishida H
    • Journal Title

      Plant Physiology

      Volume: 161 Issue: 4 Pages: 1682-1693

    • DOI

      10.1104/pp.113.215632

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutational effects of γ-rays and carbon ion beams in Arabidopsis seedlings2013

    • Author(s)
      Ryouhei Yoshihara
    • Journal Title

      Journal of Radiation Research

      Volume: 印刷中 Issue: 6 Pages: 1050-1056

    • DOI

      10.1093/jrr/rrt074

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deficiency of autophagy leads to significant changes of metabolic profiles in Arabidopsis.2013

    • Author(s)
      Izumi M, Hidema J, Ishida H
    • Journal Title

      Plant Signaling & Behavior

      Volume: 8 Issue: 8 Pages: 443-443

    • DOI

      10.4161/psb.25023

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Augmentation of CPD photolyase activity in japonica and indica rice increases their UVB resistance but still leaves the difference in their sensitivities2012

    • Author(s)
      M.Teranishi
    • Journal Title

      Photochem.Photobiol.Sci.

      Volume: (未定)(In press) Issue: 5 Pages: 812-820

    • DOI

      10.1039/c2pp05392f

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Suppression of Ku70/80 or Lig4 leads to decreased stable transformation and enhanced homologous recombination in rice2012

    • Author(s)
      Nishizawa-Yokoi A, Nonaka S, Saika H, Kwon YI, Osakabe K, Toki S
    • Journal Title

      New Phytol

      Volume: 196 Issue: 4 Pages: 1048-1059

    • DOI

      10.1111/j.1469-8137.2012.04350.x

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice2012

    • Author(s)
      Kwon Y-I, Abe K, Osakabe K, Endo M, Nishizawa-Yokoi A, Saika H, Shimada H, Toki S
    • Journal Title

      Plant Cell Physiol

      Volume: 53 Issue: 12 Pages: 2142-2152

    • DOI

      10.1093/pcp/pcs155

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] An ion-beam induced balancer chromosome in Arabidopsis2015

    • Author(s)
      Ayako Sakamoto, Thi Thuong Lan Vo, Mutsumi Akita, Yoshihiro Hase
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京農業大学(世田谷区)
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Research of biological effect by solar radiation using exposure area at ISS platform2014

    • Author(s)
      Hidema J., A. Takahashi, K. Kobayashi. T. Ohnishi
    • Organizer
      10th Asian Microgravity Symposium 2014 (AMS2014)
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2014-10-27 – 2014-10-31
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] シロイヌナズナにおけるイオンビーム誘発損傷の定量解析2014

    • Author(s)
      寺西美佳、山口弘子、坂本綾子、日出間純
    • Organizer
      第9回 高崎量子応用研究シンポジウム
    • Place of Presentation
      高崎シティギャラリー
    • Year and Date
      2014-10-09 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] ISS曝露部実験施設を利用した太陽放射光のl植物(生物)影響解析の意義とその実現に向けて2014

    • Author(s)
      日出間純
    • Organizer
      日本放射線影響学会第57回大会
    • Place of Presentation
      かごしま県民交流センター
    • Year and Date
      2014-10-01 – 2014-10-03
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 基部陸上植物ゼニゴケの太陽放射線応答に関する研究2014

    • Author(s)
      一條拓巳、寺西美佳、三岡周子、西浜竜一、河内孝之、日出間純
    • Organizer
      日本宇宙生物科学会第28回大会
    • Place of Presentation
      大阪府立大学
    • Year and Date
      2014-09-22 – 2014-09-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] in vitro Screening of Target Kinases of AtATR2014

    • Author(s)
      Sakamoto AN
    • Organizer
      Plant Genome Stability and Change 2014
    • Place of Presentation
      Asilomer Conference Center (USA)
    • Year and Date
      2014-07-17 – 2014-07-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Non-homologous end joining pathway is involved in stable T-DNA integration in rice2013

    • Author(s)
      Seiichi Toki
    • Organizer
      34th Annual Crown Gall Conference
    • Place of Presentation
      アイオワ・アメリカ
    • Year and Date
      2013-11-23
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Gene-targeting-mediated mutagenesis in rice2013

    • Author(s)
      雑賀 啓明
    • Organizer
      11th International Symposium on Rice Functional Genomics
    • Place of Presentation
      ニューデリー・インド
    • Year and Date
      2013-11-22
    • Related Report
      2013 Annual Research Report
  • [Presentation] 高等植物における損傷乗り越え複製と突然変異2013

    • Author(s)
      坂本綾子、秋田睦、遠藤真咲、土岐精一
    • Organizer
      日本放射線影響学会第56回大会
    • Place of Presentation
      ホテルグランパレス青森
    • Year and Date
      2013-10-18 – 2013-10-20
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] イオンビームおよびガンマ線の植物の相同組換え活性に及ぼす効果2013

    • Author(s)
      坂本綾子、土岐精一、日出間純
    • Organizer
      第8回高崎量子応用シンポジウム
    • Place of Presentation
      高崎シティーギャラリー
    • Year and Date
      2013-10-11
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 植物における放射線誘発DNA損傷の定量解析2013

    • Author(s)
      寺西美佳, 山口弘子, 坂本綾子、土岐精一, 日出間純
    • Organizer
      日本宇宙生物科学会・第27回大会
    • Place of Presentation
      筑波大学
    • Year and Date
      2013-09-27 – 2013-09-28
    • Related Report
      2013 Annual Research Report
  • [Presentation] 船外実験プラットフォーム利用実験施設Exposure area at ISS platform2013

    • Author(s)
      高橋照久、日出間純、小林憲正、大西武雄
    • Organizer
      日本宇宙生物科学会・第27回大会
    • Place of Presentation
      筑波大学
    • Year and Date
      2013-09-27 – 2013-09-28
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 高等植物の紫外線耐性機構の解明と耐性遺伝子資源の開発2013

    • Author(s)
      日出間純
    • Organizer
      太陽紫外線防御委員会第23回シンポジウム
    • Place of Presentation
      神戸
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ゲノム安定性維持におけるAtRev1の様々な機能2013

    • Author(s)
      坂本 綾子
    • Organizer
      第54回日本植物生理学会年会
    • Place of Presentation
      岡山
    • Related Report
      2012 Annual Research Report
  • [Presentation] Identification of putative mitochondrion and nucleus targeting sequences of triple-targeted CPD photolyase protein of rice plant2013

    • Author(s)
      Jun Hidema
    • Organizer
      The 6th Asia & Oceania Congerence on Photobiology
    • Place of Presentation
      Sydney, NSW Australia
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 植物における放射線誘発DNA損傷の定量解析2013

    • Author(s)
      寺西美佳, 山口弘子, 坂本綾子、土岐精一, 日出間純
    • Organizer
      日本宇宙生物科学会・第27回大会
    • Place of Presentation
      つくば
    • Related Report
      2012 Annual Research Report
  • [Presentation] イオンビームおよびガンマ線の植物の相同組換え活性に及ぼす効果2013

    • Author(s)
      坂本 綾子
    • Organizer
      第8回高崎量子応用シンポジウム
    • Place of Presentation
      高崎
    • Related Report
      2012 Annual Research Report
  • [Presentation] 高等植物における損傷乗り越え複製と突然変異2013

    • Author(s)
      坂本 綾子
    • Organizer
      日本放射線影響学会第56回大会
    • Place of Presentation
      青森
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Gene-targeting-mediated mutagenesis in rice2013

    • Author(s)
      雑賀 啓明
    • Organizer
      11th International Symposium on Rice Functional Genomics
    • Place of Presentation
      ニューデリー インド
    • Related Report
      2012 Annual Research Report
  • [Presentation] Non-homologous end joining pathway is involved in stable T-DNA integration in rice2013

    • Author(s)
      土岐 精一
    • Organizer
      34th Annual Crown Gall Conference
    • Place of Presentation
      アイオワ USA
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 宇宙環境を利用した植物紫外線研究の新たな展開2012

    • Author(s)
      日出間純
    • Organizer
      日本放射線影響学会 第55回大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 植物を用いた太陽放射線誘発DNA損傷修復のリアルタイム観察系の検討2012

    • Author(s)
      寺西美佳, 山田道子, 高橋さやか, 高橋文雄, 日出間純
    • Organizer
      日本宇宙生物科学会 第26回大会
    • Place of Presentation
      徳島
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA修復欠損植物における誘発突然変異スペクトルの解析2012

    • Author(s)
      坂本 綾子
    • Organizer
      第7回高崎量子応用シンポジウム
    • Place of Presentation
      高崎
    • Related Report
      2012 Annual Research Report
  • [Presentation] イネにおける標的遺伝子改変技術の展望2012

    • Author(s)
      横井彩子, 刑部敬史, 雑賀啓明, 土岐精一
    • Organizer
      イネ遺伝学・分子生物学ワークショップ2012
    • Place of Presentation
      奈良
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 配列特異的な人為的改変を可能にする遺伝子操作技術の開発と利用2012

    • Author(s)
      刑部敬史, 横井彩子, 權容益, 大槻並枝, 遠藤真咲, 雑賀啓明, 土岐精一
    • Organizer
      30回日本植物細胞分子生物学会講演
    • Place of Presentation
      奈良
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Stimulation of homologous recombination in rice by enhanced resection of DSBs with OsRecQl4 and/or Exo12012

    • Author(s)
      Kwon Y-I, Abe K, Osakabe K, Endo M, Nishizawa-Yokoi A, Saika H, Toki S
    • Organizer
      10th International Congress on Plant Molecular Biology
    • Place of Presentation
      Jeju, Korea
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks] 東北大学大学院生命科学研究科ゲノム継承システム分野

    • URL

      http://www.ige.tohoku.ac.jp/genome/index.htm

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
  • [Remarks] 東北大学大学院生命科学研究科 ゲノム継承システム分野

    • URL

      http://www.ige.tohoku.ac.jp/genome/index.htm

    • Related Report
      2012 Annual Research Report
  • [Remarks] 農業生物先端ゲノム研究センター ゲノム機能改変研究ユニット

    • URL

      http://www.nias.affrc.go.jp/org/Agrogenome/Engineering/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 日本原子力研究開発機構 医療・バイオ応用量子ビーム技術研究ユニット

    • URL

      http://www.taka.jaea.go.jp/rab_div/index_j.html

    • Related Report
      2012 Annual Research Report

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Published: 2013-05-15   Modified: 2019-07-29  

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