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Development of Organic Chemistry-based Method for Endogenous Protein Modification under Live Cells

Research Project

Project/Area Number 24245032
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKyoto University

Principal Investigator

HAMACHI Itaru  京都大学, 工学(系)研究科(研究院), 教授 (90202259)

Project Period (FY) 2012-05-31 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥45,370,000 (Direct Cost: ¥34,900,000、Indirect Cost: ¥10,470,000)
Fiscal Year 2014: ¥23,140,000 (Direct Cost: ¥17,800,000、Indirect Cost: ¥5,340,000)
Fiscal Year 2013: ¥12,350,000 (Direct Cost: ¥9,500,000、Indirect Cost: ¥2,850,000)
Fiscal Year 2012: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Keywords生命化学 / 細胞系反応 / 蛋白質 / ラベル化
Outline of Final Research Achievements

The objective of this research project is development of novel chemistry-based methods for selective labeling of endogenous (natural) proteins not only in purified test tube, but also under crude live cell conditions. During the research, I succeeded in developing two of new ligand-directed chemistry, distinct from the previously established ligand-directed tosyl chemistry. The first is based on acyl-imidazole functional group (LDAI) which can be widely applied to membrane-bound proteins in live cells, and the second one exploits ortho-dibromophenyl-aryl ester as a cleavable functional group (termed as LDBB) that enables rapid labeling inside live cells.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (26 results)

All 2015 2014 2013 2012 Other

All Journal Article (13 results) (of which Peer Reviewed: 12 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (11 results) (of which Invited: 11 results) Remarks (2 results)

  • [Journal Article] Ligand-Directed Tosyl Chemistry for Selective Native Protein Labeling In Vitro, In Cells, and In Vivo2015

    • Author(s)
      Shinya Tsukiji, Itaru Hamachi
    • Journal Title

      Methods in Molecular Biology

      Volume: 1266 Pages: 243-263

    • DOI

      10.1007/978-1-4939-2272-7_17

    • ISBN
      9781493922710, 9781493922727
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Labeling Proteins by Affinity-guided DMAP Chemistry2015

    • Author(s)
      Tomonori Tamura, Itaru Hamachi
    • Journal Title

      Methods in Molecular Biology

      Volume: 1266 Pages: 229-242

    • DOI

      10.1007/978-1-4939-2272-7_16

    • ISBN
      9781493922710, 9781493922727
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extended Affinity-guided DMAP Chemistry with Finely-tuned Acyl Donor for Intracellular FKBP12 Labeling2015

    • Author(s)
      Zhining Song, Yousuke Takaoka, Yoshiyuki Kioi, Kazuhiro Komatsu,Tomonori Tamura, Takayuki Miki, Itaru Hamachi
    • Journal Title

      Chemistry Letters

      Volume: 44 Issue: 3 Pages: 333-335

    • DOI

      10.1246/cl.141065

    • NAID

      130004868396

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Ligand-directed Dibromophenyl Benzoate Chemistry for Rapid and Selective Acylation of Intracellular Natural Proteins2015

    • Author(s)
      Yousuke Takaoka, Yuki Nishikawa, Yuki Hashimoto, Kenta Sasaki, Itaru Hamachi
    • Journal Title

      Chemical Science

      Volume: 6 Issue: 5 Pages: 3217-3224

    • DOI

      10.1039/c5sc00190k

    • NAID

      120005753890

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Design of a Binuclear Ni(II)-iminodiacetic Acid (IDA) Complex for Selective Recognition and Covalent Labeling of His-tag Fused Proteins2014

    • Author(s)
      Ikuko Takahira, Hirokazu Fuchida, Shigekazu Tabata, Naoya Shindo, Shohei Uchinomiya, Itaru Hamachi, Akio Ojida
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 24 Issue: 13 Pages: 2855-2858

    • DOI

      10.1016/j.bmcl.2014.04.096

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recent Progress in Design of Protein-based Fluorescent Biosensors and Their Cellular Applications2014

    • Author(s)
      Tomonori Tamura, Itaru Hamachi
    • Journal Title

      ACS Chemical Biology

      Volume: 9 Issue: 12 Pages: 2708-2717

    • DOI

      10.1021/cb500661v

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ligand-directed Tosyl Chemistry for in Situ Native Protein Labeling and Engineering in Living Systems: from Basic Properties to Applications2014

    • Author(s)
      Shinya Tsukiji, Itaru Hamachi
    • Journal Title

      Curr. Opin. Chem. Biol.

      Volume: 21 Pages: 136-143

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Peptide Tag/Probe Pairs Based on Coordination Chemistry for Protein Labeling2014

    • Author(s)
      Shohei Uchinomiya, Akio Ojida, Itaru Hamachi
    • Journal Title

      Inorganic Chemistry

      Volume: 53 Issue: 4 Pages: 1816-1823

    • DOI

      10.1021/ic401612z

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Disassembly-driven Turn-on Sensing of Enzyme Activity by using Substrate-based Fluorescent Nanoprobe2013

    • Author(s)
      Yousuke Takaoka, Yoshiaki Fukuyama, Kazuya Matsuo, Itaru Hamachi
    • Journal Title

      Chemistry Letters

      Volume: 42 Issue: 11 Pages: 1426-1428

    • DOI

      10.1246/cl.130697

    • NAID

      130004426810

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthetic Self-Localizing Ligands That Control the Spatial Location of Proteins in Living Cells2013

    • Author(s)
      Manabu Ishida, Hideaki Watanabe, Kazumasa Takigawa, Yasutaka Kurishita, Choji Oki, Akinobu Nakamura, Itaru Hamachi, and Shinya Tsukiji
    • Journal Title

      Journal of the American Chemical Society

      Volume: 135 Issue: 34 Pages: 12684-12689

    • DOI

      10.1021/ja4046907

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] One-step Construction of Caged Carbonic Anhydrase I Using Ligand-directed Acyl Imidazole-based Protein Labeling Method2013

    • Author(s)
      Kazuya Matsuo
    • Journal Title

      Chem. Sci

      Volume: (印刷中) Issue: 6 Pages: 2573-2580

    • DOI

      10.1039/c3sc50560j

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protein Organic Chemistry and Application for Labeling and Engineering in Live-Cell Systems2013

    • Author(s)
      Yousuke Takaoka, Akio Ojida, Itaru Hamachi
    • Journal Title

      Angewante Chemie International Edition

      Volume: 52 Issue: 15 Pages: 4088-4106

    • DOI

      10.1002/anie.201207089

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 細胞内在性タンパク質の直接ラベル化とセンシング2012

    • Author(s)
      浜地 格
    • Journal Title

      ここまで進んだバイオセンシング・イメージング-1分子から細胞,脳まで-

      Volume: - Pages: 101-107

    • NAID

      120005540440

    • Related Report
      2012 Annual Research Report
  • [Presentation] タンパク質ラベリングを基盤とした生細胞有機化学2015

    • Author(s)
      浜地 格
    • Organizer
      JST-ERATO伊藤グライコトリロジープロジェクト終了シンポジウム「融合的アプローチによる生命現象の探求」
    • Place of Presentation
      理化学研究所・大河内記念ホール
    • Year and Date
      2015-01-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Ligand-directed Chemistry for Protein Labeling under Live Conditions2014

    • Author(s)
      Itaru Hamachi
    • Organizer
      15th Tetrahedron Symposium -Asian Edition
    • Place of Presentation
      Singapore EXPO Convention and Exhibition Centre, SINGAPORE
    • Year and Date
      2014-10-28 – 2014-10-31
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Protein Organic Chemistry under Live Cell Conditions2014

    • Author(s)
      Itaru Hamachi
    • Organizer
      The Nagoya Medal of Organic Chemistry 2014
    • Place of Presentation
      Noyori Conference Hall, Nagoya University, JAPAN
    • Year and Date
      2014-10-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 内在性タンパク質のケミカルラベルによる生細胞での相互作用解析2014

    • Author(s)
      浜地 格
    • Organizer
      第6回薬学の未来を考える京都シンポジウム「イメージング技術が切り開く創薬・病態研究の未来」
    • Place of Presentation
      京都大学・薬学部記念講堂
    • Year and Date
      2014-08-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Chemical Strategies for Labeling and Manipulating Proteins in Live Cells2014

    • Author(s)
      Itaru Hamachi
    • Organizer
      Bioorthogonal Chemistry Meeting of the Division of Biochemistry
    • Place of Presentation
      Harnack-Haus (Goethe-Saal), Berlin, GERMANY
    • Year and Date
      2014-07-16 – 2014-07-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Ligand-directed chemistry for endogenous protein labeling under live conditions2014

    • Author(s)
      Itaru Hamachi
    • Organizer
      15th Tetrahedron Symposium
    • Place of Presentation
      Millennium Gloucester Hotel London Kensington, UK
    • Year and Date
      2014-06-24 – 2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Chemistry for Native Protein Labeling Under Live Conditions2013

    • Author(s)
      Itaru Hamachi
    • Organizer
      The 3rd Annual Symposium "Frontiers at the Chemistry-Biology Interface"
    • Place of Presentation
      Peking University, China
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 内在性蛋白質のケミカルレベル化法の開発とイメージング2013

    • Author(s)
      浜地 格
    • Organizer
      第22回日本バイオイメージング学会学術集会
    • Place of Presentation
      東京大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 生細胞での化学プローブ/蛋白質の直接ハイブリッド化による機能化2013

    • Author(s)
      浜地 格
    • Organizer
      化学工学会第45回秋季大会
    • Place of Presentation
      岡山大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 細胞夾雑系でのタンパク質合成化学2013

    • Author(s)
      浜地 格
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 生命化学の深化を目指した分子技術2013

    • Author(s)
      浜地 格
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks] 浜地研究室ホームページ

    • URL

      http://www.sbchem.kyoto-u.ac.jp/hamachi-lab/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 浜地研究室 - 京都大学大学院 工学研究科 合成・生物化学専攻 浜地研究室

    • URL

      http://www.sbchem.kyoto-u.ac.jp/hamachi-lab

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2012-11-27   Modified: 2019-07-29  

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