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Unraveling the formation mechanism of membrane macroscopic structures by single-molecule imaging

Research Project

Project/Area Number 24247029
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionKyoto University

Principal Investigator

KUSUMI Akihiro  京都大学, 物質-細胞統合システム拠点, 教授 (50169992)

Co-Investigator(Kenkyū-buntansha) KASAI Rinshi  京都大学, 再生医科学研究所, 助教 (20447949)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥46,930,000 (Direct Cost: ¥36,100,000、Indirect Cost: ¥10,830,000)
Fiscal Year 2014: ¥10,400,000 (Direct Cost: ¥8,000,000、Indirect Cost: ¥2,400,000)
Fiscal Year 2013: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2012: ¥26,390,000 (Direct Cost: ¥20,300,000、Indirect Cost: ¥6,090,000)
Keywords細胞生物物理 / 1分子計測・操作 / メゾスコピック系 / 生体分子 / 細胞膜の動的構造
Outline of Final Research Achievements

There exist many macroscopic structures with sizes greater than 500 nm in the plasma membrane, which perform various important functions. In this study, we were interested in two macroscopic structures, the focal adhesion and the synapse. We examined and compared their fine structures and the regulation mechanisms for the formation-disintegration of their constituent molecules, using world-leading single-molecule imaging-tracking for live cells developed by us previously. Our results indicate that these structures are not single entities of massive protein assemblies as previously assumed, but largely consist of the fluid membrane dotted by protein islands of sizes less than 100 nm in diameter, which we call archipelago architectures. The channels (fluid membrane part) between the islands were found to be compartmentalized by the actin membrane skeleton, like the bulk region of the plasma membrane.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (41 results)

All 2014 2013 2012 Other

All Journal Article (17 results) (of which Peer Reviewed: 17 results) Presentation (24 results) (of which Invited: 24 results)

  • [Journal Article] Tracking single molecules at work in living cells2014

    • Author(s)
      A. Kusumi, T. A. Tsunoyama, K. M. Hirosawa, R. S. Kasai, and T. K. Fujiwara
    • Journal Title

      Nature Chemical Biology

      Volume: 10 Issue: 7 Pages: 524-532

    • DOI

      10.1038/nchembio.1558

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast diffusion of a fiuorescent cholesterol analog in compartmentalized plasma membranes.2014

    • Author(s)
      Hiramoto-Yamaki N, Tanaka KA, Suzuki KG, Hirosawa KM, Miyahara MS, Kalay Z, Tanaka K, Kasai RS, Kusumi A, Fujiwara TK.
    • Journal Title

      Traffic

      Volume: 15(In Press)(5月号) Issue: 6 Pages: 583-612

    • DOI

      10.1111/tra.12163

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biocompatible fluorescent silicon nanocrystals for single-molecule tracking and fluorescence imaging2013

    • Author(s)
      Nishimura H, Ritchie K, Kasai RS, Morone N, Sugimura H, Tanaka K, Sase I, Yoshimura A, Nakano Y, Fujiwara TK, and Kusumi A
    • Journal Title

      J Cell Biol.

      Volume: 202 Issue: 6 Pages: 967-83

    • DOI

      10.1083/jcb.201301053

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule imaging of receptor-receptor interactions2013

    • Author(s)
      K. G. Suzuki, R. S. Kasai, T. K. Fujiwara, and A. Kusumi
    • Journal Title

      Methods Cell Biol.

      Volume: 117 Pages: 373-390

    • DOI

      10.1016/b978-0-12-408143-7.00020-7

    • ISBN
      9780124081437
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 接着斑の群島構造モデルと形成機構-1分子イメジングによる解明2013

    • Author(s)
      柴田明裕、楠見明弘
    • Journal Title

      生体の科学

      Volume: 64(3) Pages: 232-238

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 超高速・超解像1蛍光分子顕微鏡2013

    • Author(s)
      藤原敬宏、笠井倫志、楠見明弘
    • Journal Title

      現代化学

      Volume: 508 Pages: 50-51

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 新ラフト仮説:細胞膜ラフトによるシグナル伝達機構2013

    • Author(s)
      鈴木健一、楠見明弘
    • Journal Title

      生物物理

      Volume: 53(6) Pages: 295-300

    • NAID

      10031203604

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1分子イメージングによる細胞膜シグナル変換機構の解明2013

    • Author(s)
      楠見明弘、鈴木健一、藤原敬宏、笠井倫志
    • Journal Title

      生体の科学

      Volume: 64(6) Pages: 539-544

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ABCA1 dimer-monomer interconversion during HDL generation revealed by single-molecule imaging.2013

    • Author(s)
      Nagata, K., O., Nakada, C.,, Kasai, R. S.,Kusumi, A. and Ueda, K.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 110 Issue: 13 Pages: 5034-5039

    • DOI

      10.1073/pnas.1220703110

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Racl recruitment to the archipelago structure of the focal adhesion through the fluid membrane as revealed by single-molecule analysis2013

    • Author(s)
      A. C. E. Shibata, L. H. Chen, R. Nagai, F. Ishidate, R. Chadda, Y. Miwa, K. Naruse, Y. M. Shirai, T. K. Fujiwara, and A. Kusumi
    • Journal Title

      Cytoskeleton

      Volume: 70 Issue: 3 Pages: 161-177

    • DOI

      10.1002/cm.21097

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Raf inhibitors target Ras spatiotemporal dynamics2012

    • Author(s)
      K. J. Cho, R. S. Kasai, J. H. Park, S. Chigurupati, S. J. Heidorn, D. van der Hoeven, S. J. Plowman, A. Kusumi, R. Marais, and J. F. Hancock
    • Journal Title

      Curr. Biol.

      Volume: 22 Issue: 11 Pages: 945-955

    • DOI

      10.1016/j.cub.2012.03.067

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Archipelago architecture of the focal adhesion: Membrane molecules freely enter and exit from the focal adhesion zone2012

    • Author(s)
      A. C. E. Shibata, T. K. Fujiwara, L. Chen, K. G. N. Suzuki, Y. Ishikaia, Y. L. Nemoto, Y. Miwa, Z. Kalay, R. Chadda, K. Naruse, and A. Kusumi
    • Journal Title

      Cytoskeleton

      Volume: 69 Issue: 6 Pages: 380-392

    • DOI

      10.1002/cm.21032

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transient GPI-anchored protein homodimers are units for raft organization and function2012

    • Author(s)
      K. G. N. Suzuki, R. S. Kasai, K. M. Hirosawa, Y. L. Nemoto, M. Ishibashi, Y. Miwa, T. K. Fujiwara, and A. Kusumi
    • Journal Title

      Nat. Chem. Biol.

      Volume: 8 Issue: 9 Pages: 774-783

    • DOI

      10.1038/nchembio.1028

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cholesterol modulates cell signaling and protein networking by specifically interacting with PDZ domain-containing scaffold proteins2012

    • Author(s)
      R. Sheng, Y. Chen, H.Y. Gee, E. Stec, H.R. Melowic, N.R. Blatner, M.P. Tun, Y. Kim, M. Kallberg, T.K. Fujiwara, J.H. Hong, K.P. Kim, H. Lu, A. Kusumi, M.G. Lee, and W. Cho
    • Journal Title

      Nat. Commun.

      Volume: 3 Issue: 1 Pages: 1249-1249

    • DOI

      10.1038/ncomms2221

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Membrane mechanisms for signal transduction : The coupling of the meso-scale raft domains to membrane-skeleton-induced compartments and dynamic protein complexes2012

    • Author(s)
      A.Kusumi, T.K.Fujiwara, N.Morone, K.J.Yoshida, R.Chadda, M.Xie, R.S.Kasai, K.G.N.Suzuki
    • Journal Title

      Semin.Cell.Dev.Biol.

      Volume: 23(2) Issue: 2 Pages: 126-144

    • DOI

      10.1016/j.semcdb.2012.01.018

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic organizing principles of the plasma membrane that regulate signal transduction : commemorating the fortieth anniversary of Singer and Nicolson's fluid-mosaic model.2012

    • Author(s)
      Kusumi A, Fujiwara TK, Chadda R, Xie M, Tsunoyama TA, Kalay Z, Kasai RS, Suzuki KG.
    • Journal Title

      Annual review of cell and developmental biology

      Volume: 28 Issue: 1 Pages: 215-50

    • DOI

      10.1146/annurev-cellbio-100809-151736

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An MBoC Favorite: Gangliosides GM1 and GM3 in the living cell membrane form clusters susceptible to cholesterol depletion and chilling2012

    • Author(s)
      A. Kusumi
    • Journal Title

      Mol. Biol. Cell.

      Volume: 23 Issue: 20 Pages: 3925-3925

    • DOI

      10.1091/mbc.e12-02-0159

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Plasma membrane domain mechanisms for signal transduction as revealed by single-molecule tracking2014

    • Author(s)
      Akihiro Kusumi
    • Organizer
      2014 Symposium in Chemical Biology
    • Place of Presentation
      Swiss National Centre of Competence in Research (NCCR) Chemical Biology (Lausanne, Switzerland)
    • Year and Date
      2014-11-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Basic unit rafts for raft formation and function as revealed by single-molecule tracking2014

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Annual meeting of the Korean Society for Molecular and Cell Biology (KSMCB) 2014
    • Place of Presentation
      COEX (Seoul, Korea)
    • Year and Date
      2014-10-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Organizing principles of the plasma membrane for signal transduction as revealed by single-molecule tracking2014

    • Author(s)
      Akihiro Kusumi
    • Organizer
      ComBio 2014
    • Place of Presentation
      National Convention Centre Canberra (Canberra, Australia)
    • Year and Date
      2014-10-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Unit raft mechanism for signal transduction revealed by single-molecule tracking2014

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Biomembrane Days 2014
    • Place of Presentation
      Harnack House of the Max Planck Society (Berlin, Germany)
    • Year and Date
      2014-09-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Membrane mechanisms as revealed by single-molecule tracking in living cells2014

    • Author(s)
      Akihiro Kusumi
    • Organizer
      The Biennial British Biophysical Society Conference
    • Place of Presentation
      Univeristy of Warwick (Coventry, U.K.)
    • Year and Date
      2014-07-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Membrane mechanisms: Concerted action of membrane domains for signal transduction in the plasma membrane2014

    • Author(s)
      Akihiro Kusumi
    • Organizer
      8th IUPAP International Conference on Biological Physics
    • Place of Presentation
      Institute of Physics (IOP), Chinese Academy of Sciences (CAS) (Beijing, China)
    • Year and Date
      2014-06-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Hypothesis of unit rafts as organizers of the meso-scale domain structure and function in the plasma membrane

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Diffusion Fundamentals V "Basic Principles of Diffusion Theory, Experiment and Application"
    • Place of Presentation
      Leipzig University (ドイツ)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Unit raft hypothesis: a proposition based on advanced single-molecule imaging results

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Engineering Life 2013 Symposium "Bio-molecular principles for novel methods and materials"
    • Place of Presentation
      Hotel INNSIDE Dresden(ドイツ)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Short-lived homodimer rafts of GPI-anchored proteins and glycolipids as basic units for organization and operation of raft microcompartments

    • Author(s)
      Akihiro Kusumi
    • Organizer
      International Symposium on Cellular Microcompartments
    • Place of Presentation
      University of Osnabruck(ドイツ)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Hierarchical and dynamic organization of the plasma membrane for signal transduction revealed by single-molecule tracking

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Departmental Seminar, Dept. of Chemistry and Dept. of Biology, King's College London
    • Place of Presentation
      King's College London(イギリス)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Hierarchical and dynamic organization of the plasma member for signal transduction as revealed by single-molecule tracking

    • Author(s)
      Akihiro Kusumi
    • Organizer
      The 14th Hunter Meeting
    • Place of Presentation
      Sebel Kirkton Park Hunter Valley(オーストラリア)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Organizing principles of the plasma membrane: Three-tiered hierarchical meso-scale domain architecture revealed by single-molecule tracking

    • Author(s)
      A. Kusumi
    • Organizer
      CLS (Peking University)-iCeMS (Kyoto University) Joint Symposium
    • Place of Presentation
      北京大学(中国)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞膜上の特別なドメインの形成機構と機能

    • Author(s)
      楠見明弘
    • Organizer
      第27回動物細胞工学シンポジウム 「細胞表面の理解と応用」
    • Place of Presentation
      東京工業大学キャンパスイノベーションセンター(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子毎に見て細胞膜がはたらく仕組みを解く

    • Author(s)
      楠見明弘
    • Organizer
      京都大学 再生医科学研究所 第7回 公開講演会 「分子から細胞さらに再生医療へ」
    • Place of Presentation
      京都大学(京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Organizing principles of the plasma membrane: Three-tiered hierarchical meso-scale domain architecture revealed by single-molecule tracking

    • Author(s)
      楠見明弘
    • Organizer
      Joint Summer Research School in Nanomedicine
    • Place of Presentation
      慶応義塾大学(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 受容体ホモダイマーによるラフト機能創出:1分子イメジングによる研究

    • Author(s)
      楠見明弘
    • Organizer
      第21回日本バイオイメージング学会学術集会
    • Place of Presentation
      国立京都国際会館(京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Transient GPI-anchored protein homodimer rafts are basic units for raft organization and function: single-molecule imaging study

    • Author(s)
      A. Kusumi
    • Organizer
      Departmental Seminar, National Centre for Biological Sciences
    • Place of Presentation
      National Centre for Biological Sciences(インド)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Transient GPI-anchored protein homodimer rafts are basic units for raft organization and function

    • Author(s)
      A. Kusumi
    • Organizer
      The Biophysical Society (U.S.) Thematic Meeting "Lipid-protein Interactions in Membranes: Implications for Health and Disease"
    • Place of Presentation
      Centre for Cellular and Molecular Biology(インド)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞膜の階層メゾドメイン構造とシグナル変換制御機構:1分子イメージングによる研究

    • Author(s)
      楠見明弘
    • Organizer
      第34回生体膜と薬物の相互作用シンポジウム
    • Place of Presentation
      京都大学(京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Dynamic organizing principles of the plasma membrane that regulate signal transduction: single-molecule tracking studies

    • Author(s)
      A. Kusumi
    • Organizer
      Departmental Seminar, Dept. of Physiology, University of Otago
    • Place of Presentation
      University of Otago(ニュージーランド)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ラフト機能と構造の基本単位として働くGPIアンカー型受容体ホモダイマーラフト:1分子イメージングによる研究

    • Author(s)
      楠見明弘
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞膜シグナル伝達を担うメゾスケールドメイン構造:1分子イメージング解析による研究

    • Author(s)
      楠見明弘
    • Organizer
      大阪大学 蛋白質研究所 セミナー 「シグナル伝達と解析技術のあらたな潮流」
    • Place of Presentation
      大阪大学蛋白質研究所(大阪)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] First steps to raft formation as revealed by single-molecule tracking: transient GPI-anchored protein homodimer rafts are basic units for raft organization and function

    • Author(s)
      A. Kusumi
    • Organizer
      RSC Publishing-iCeMS Joint International Symposium "Cell-Material Integration and Biomaterials Science"
    • Place of Presentation
      京都大学(京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ラフト形成と機能のための細胞の第一歩

    • Author(s)
      楠見明弘
    • Organizer
      第86回 日本薬理学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Annual Research Report
    • Invited

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Published: 2013-05-15   Modified: 2019-07-29  

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