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Strucuter and Photochemical Reactions of Photoactive Yellow Proteins: Generality and diversity

Research Project

Project/Area Number 24247030
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Kataoka Mikio  奈良先端科学技術大学院大学, その他, 理事・副学長 (30150254)

Co-Investigator(Kenkyū-buntansha) 上久保 裕生  奈良先端科学技術大学院大学, 物質創成科学研究科, 准教授 (20311128)
山崎 洋一  奈良先端科学技術大学院大学, 物質創成科学研究科, 助教 (40332770)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥45,110,000 (Direct Cost: ¥34,700,000、Indirect Cost: ¥10,410,000)
Fiscal Year 2015: ¥11,570,000 (Direct Cost: ¥8,900,000、Indirect Cost: ¥2,670,000)
Fiscal Year 2014: ¥13,390,000 (Direct Cost: ¥10,300,000、Indirect Cost: ¥3,090,000)
Fiscal Year 2013: ¥13,260,000 (Direct Cost: ¥10,200,000、Indirect Cost: ¥3,060,000)
Fiscal Year 2012: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Keywordsイェロープロテイン / 低障壁水素結合 / 光反応 / 結晶構造解析 / アルギニン / FTIR / キメラ蛋白質 / 国際情報交換 / 国際情報交換(アメリカ、デンマーク) / FTIR / 時間分解蛋白質結晶構造解析 / 時間分割ラウエ法 / チロシンのpKa / NMR / キメラタンパク質
Outline of Final Research Achievements

There are many divergent features even in a structurally homologous proteins. It is not clear how they realize these divergent functions on their same structural backbone. To evaluate these molecular divergent mechanism based on common structure, different PYP proteins have been investigated about their molecular mechanism for their features and functions. From the neutron-X-ray combined crystal analysis and very fast time resolved X-ray crystal analysis, there is a unique low barrier hydrogen bond (LBHB) system as a basic component for PYP features. In this basic system there is a special arginine residue which is deprotonated even in a neutral pH condition. Divergent features on PYP molecules were realized by several residues close or distal site from the LBHB. These residues are located on surface region on PYP molecules.

Report

(5 results)
  • 2016 Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (107 results)

All 2016 2015 2014 2013 2012 Other

All Int'l Joint Research (2 results) Journal Article (17 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 15 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (83 results) (of which Int'l Joint Research: 7 results,  Invited: 10 results) Book (5 results)

  • [Int'l Joint Research] Aarhus university(デンマーク)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] NIDDK,National Institutes of Health(米国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Unambiguous Determination of the Ionization State of a Photoactive Protein Active Site Arginine in Solution by NMR Spectroscopy2016

    • Author(s)
      Y. Yoshimura, N. A.Oktaviani, K.Yonezawa, H.Kamikubo, F. A. A. Mulder
    • Journal Title

      Angewandte Chemie

      Volume: 56 Issue: 1 Pages: 239-242

    • DOI

      10.1002/anie.201609605

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] VIPP1 has a disordered C-terminal tail necessary for protecting photosynthetic membranes against stress in Arabidopsis2016

    • Author(s)
      L. Zhang, H. Kondo, H. Kamikubo, M. Kataoka, W. Sakamoto
    • Journal Title

      Plant Physiology

      Volume: 171 Issue: 3 Pages: 1983-1995

    • DOI

      10.1104/pp.16.00532

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein2015

    • Author(s)
      Yusuke Kanematsu, Hironari Kamikubo, Mikio Kataoka, Masanori Tachikawa
    • Journal Title

      Computational and Structural Biotechnology Journal

      Volume: 14 Pages: 16-19

    • DOI

      10.1016/j.csbj.2015.10.003

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551: Structural insights into domain swapping of cytochrome c family proteins2015

    • Author(s)
      Satoshi Nagao, Mariko Ueda, Hisao Osuka, Hirofumi Komori, Hironari Kamikubo, Mikio Kataoka, Yoshiki Higuchi, Shun Hirota
    • Journal Title

      PLoS One

      Volume: 10 Issue: 4 Pages: e0123653-e0123653

    • DOI

      10.1371/journal.pone.0123653

    • NAID

      120005716860

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Decreased amyloidogenicity by mutational modulation of surface properties of the immunoglobulin light chain BRE variable domain2014

    • Author(s)
      Yuta Kobayashi, Hirotaka Tsutsumi, Tetsuyuki Abe, Kyohei Ikeda, Yuki Tashiro, Satoru Unzai, Hironari Kamikubo, Mikio Kataoka, Hidekazu Hiroaki, Daizo Hamada
    • Journal Title

      Biochemistry

      Volume: 53(31) Issue: 31 Pages: 5162-5173

    • DOI

      10.1021/bi5007892

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer2014

    • Author(s)
      Megha Deshpande, Partha Parui, Hironari Kamikubo, Masaru Yamanaka, Satoshi Nagao, Hirofumi Komori, Mikio Kataoka, Yoshiki Higuchi, Shun Hirota
    • Journal Title

      Biochemistry

      Volume: 53(28) Issue: 28 Pages: 4696-4703

    • DOI

      10.1021/bi500497s

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Local Dynamics Coupled to Hydration Water Determines DNA-sequence Dependent Deformability2014

    • Author(s)
      H. Nakagawa, Y. Yonetani, K. Nakajima, S. Ohira-Kawamura, T.Kikuchi, Y. Inamura, M. Kataoka, H. Kono
    • Journal Title

      Physical Reiew E

      Volume: 90 Issue: 2 Pages: 022723-022723

    • DOI

      10.1103/physreve.90.022723

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin2014

    • Author(s)
      Dian Novitasari
    • Journal Title

      Advanced Materials Research

      Volume: 896 Pages: 85-88

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preferential domain orientation of HMGB2 determined by the weak intramolecular interactions mediated by the interdomain linker2013

    • Author(s)
      J. Uewaki, H. Kamikubo, J. Kurita, N. Hiroguchi, H. Moriuchi, M. Yoshida, M. Kataoka, N. U.-Tate, S. Tate
    • Journal Title

      Chem.Phys

      Volume: 419 Pages: 212

    • DOI

      10.1016/j.chemphys.2013.02.004

    • URL

      https://pure.teikyo.jp/en/publications/d5a2b53c-f986-4ac3-b994-d5a09681cf5f

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fingerprint signatures of lanthanide circularly polarized luminescence from proteins covalently labeled by a β -diketonate europium(III) chelate2013

    • Author(s)
      Junpei Yuasa
    • Journal Title

      Chem. Commn.

      Volume: 49 Issue: 41 Pages: 4604-4606

    • DOI

      10.1039/c3cc40331a

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection2013

    • Author(s)
      Mitsuhide Hamaguchi
    • Journal Title

      PLoS One

      Volume: 8 Issue: 8 Pages: 71618-71618

    • DOI

      10.1371/journal.pone.0071618

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion2013

    • Author(s)
      Inoue N, Hamada D, Kamikubo H, Hirata K, Kataoka M, Yamamoto M, Ikawa M, Okabe M, Hagihara Y
    • Journal Title

      Development

      Volume: 140(15) Issue: 15 Pages: 3221-3229

    • DOI

      10.1242/dev.094854

    • NAID

      120006957398

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory2012

    • Author(s)
      Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 50-53

    • DOI

      10.1016/j.chemphys.2012.11.022

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 中性子生物物理学の展開2012

    • Author(s)
      片岡幹雄
    • Journal Title

      波紋

      Volume: 22 Pages: 132-138

    • NAID

      130007516782

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography2012

    • Author(s)
      Friedrich Schotte
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 109 Pages: 19256-19261

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 働いているタンパク質の構造を実時間で見た!-次世代構造生物科学への期待2012

    • Author(s)
      上久保裕生
    • Journal Title

      化学

      Volume: 68 Pages: 74-75

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 1H, 13C, and 15N resonance assignment of photoactive yellow protein2012

    • Author(s)
      Trijntje J. Pool
    • Journal Title

      Biomol. NMR Assign.

      Volume: 7 Pages: 97-100

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2016

    • Author(s)
      Chiaki Ota, Hiroko Tanaka, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      The Biophycial Society 60th Annual Meeting
    • Place of Presentation
      Los Angeles, (California, USA)
    • Year and Date
      2016-02-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of auto-sampling system designed for titration-saxs to investigate protein complexes under an equilibrium condition2016

    • Author(s)
      Hironari Kamikubo, Keito Yoshida, Nobutaka Shimizu, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      The Biophycial Society 60th Annual Meeting
    • Place of Presentation
      Los Angeles, (California, USA)
    • Year and Date
      2016-02-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mechanism of amyloid formation of human calcitonin2015

    • Author(s)
      Mikio Kataoka, Hironari Kamikubo
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, (Hawaii, USA)
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Femtosecond time-resolved impulsive stimulated Raman study of the primary process of photoactive yellow protein2015

    • Author(s)
      Hikaru Kuramochi, Satoshi Takeuchi, Kento Yonezawa, Hironari Kamikubo, Mikio Kataoka, Tahei Tahara
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, (Hawaii, USA)
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Picosecond photobiology: Watching a signaling protein function in real time via 150-picosecond time-resolved X-ray diffraction and solution scattering2015

    • Author(s)
      Philip Anfinrud, Friedrich Schotte, Hyun Sun Cho, John Kyndt, Hironari Kamikubo, Mikio Kataoka
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, (Hawaii, USA)
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural investigation of direct interaction between Shootin1 and cortactin by the titration SAXS measurements2015

    • Author(s)
      Jyunko. Makino, Keito. Yoshida, Y. Kubo, K. Baba, Y. Yamazaki, N. Inagaki, Mikio. Kataoka, Hitonari. Kamikubo
    • Organizer
      The 4th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      西新プラザ(福岡県福岡市)
    • Year and Date
      2015-11-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2015

    • Author(s)
      Chiaki. Ota, Hiroko. Tanaka, T. Aizawa, Yoichi. Yamazaki, Mikio. Kataoka, Hironari. Kamikubo
    • Organizer
      The 4th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      西新プラザ(福岡県福岡市)
    • Year and Date
      2015-11-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of interaction sites on β-scaffold region of Rhodobacter capsulatus Photoactive Yellow Protein2015

    • Author(s)
      Yoichi Yamazaki, Atsuhiro Kawamura, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2015

    • Author(s)
      Kento Yonezawa, Hironari Kamikubo, Yusuke Kanematsu, Yoichi Yamazaki, Masanori Tachikawa, Mikio Kataoka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Effects of chromophores of PYP - Phytochrome Related Protein on the structure2015

    • Author(s)
      Keito Yoshida, Kento Yonezawa, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Intramolecular interaction as a determination factor for structure elements of proteins2015

    • Author(s)
      Yuji Konno, Takeshi Inagaki, Hironari Kamikubo, Mikio Kataoka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Interaction/Structure analysis of GGA-Ubiquitin complex by using titration SAXS Measurement2015

    • Author(s)
      Miho Shinohara, Hironari Kamikubo, Keito Yoshida, Yoichi Yamazaki, Kazuhisa Nakayama, Soichi Wakatsuki, Mikio Kataoka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structural investigation of direct interaction between Shootin1 and cortactin by the titration SAXS measurements2015

    • Author(s)
      Junko Makino, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka, Keito Yoshida, Naoyuki Inagaki, Yusuke Kubo, Kentarou Baba
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] The role of N-terminal region of PYP binding protein at the formation of complex with Rc-PYP2015

    • Author(s)
      Tomoyuki Yasumuro, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] イェロープロテインの 時間分解X線結晶構造解析2015

    • Author(s)
      片岡幹雄
    • Organizer
      表面力セミナー
    • Place of Presentation
      東北大学片平キャンパス(宮城県仙台市)
    • Year and Date
      2015-02-28 – 2015-03-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] 蛋白質の変性構造を掘る2015

    • Author(s)
      片岡幹雄
    • Organizer
      第4回生物系科学における学術研究の動向を探る
    • Place of Presentation
      丸駒温泉旅館(北海道千歳市)
    • Year and Date
      2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Exploring regulatory association and dissociation processes of biological molecules constituting a functional module2015

    • Author(s)
      H. Kamikubo
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Ptotein2015

    • Author(s)
      K. Yonezawa
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Relationship of the photoreactions of two sensor domains in PYP-Phytochrome Related Protein2015

    • Author(s)
      Y. Keito
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2015

    • Author(s)
      H. Tanaka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] The elucidation of the relationship between b4-5 loop region and the chromophore environment in PYPs2015

    • Author(s)
      A. Kawamura
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of the denatured structure of staphylococcal nuclease by tryptophan triplet state lifetime measurements2015

    • Author(s)
      S. Aoyagi
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structure and photoreaction of photoactive yellow protein2014

    • Author(s)
      Mikio Kataoka
    • Organizer
      OUS Physics and Chemistry joint colloquim
    • Place of Presentation
      オクラホマ大学(Oklahoma, USA)
    • Year and Date
      2014-11-04 – 2014-11-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structure and photoreaction of photoactive yellow protein2014

    • Author(s)
      Mikio Kataoka
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Analysis for different property of light induced structural changes between two PYPs2014

    • Author(s)
      Y. Yamazaki
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural change in Arginine 52 of photoactive yellow protein during the photoreaction2014

    • Author(s)
      K. Yonezawa
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Light-induced structural change of PYP-phytochrome related protein2014

    • Author(s)
      K. Yoshida
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] The elucidation of the relationship between β4-5 loop region and the chromophore environment in PYPs2014

    • Author(s)
      A. Kawamura
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Photoactive Yellow Proteinにおけるアルギニン52のプロトン化状態2014

    • Author(s)
      米澤健人
    • Organizer
      第1回「動的秩序と機能」若手研究会
    • Place of Presentation
      ラフォーレ蔵王(宮城県刈田郡蔵王町)
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] トリプトファン三重項寿命を用いたStaphylococcal nucleaseの変性構造の評価2014

    • Author(s)
      青柳貞利
    • Organizer
      第1回「動的秩序と機能」若手研究会
    • Place of Presentation
      ラフォーレ蔵王(宮城県刈田郡蔵王町)
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] マイクロ流路を用いたX線溶液散乱測定サンプルチェンジャーの開発2014

    • Author(s)
      岡部龍二
    • Organizer
      第1回「動的秩序と機能」若手研究会
    • Place of Presentation
      ラフォーレ蔵王(宮城県刈田郡蔵王町)
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis for different property of light induced structural changes between two PYPs2014

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2014

    • Author(s)
      Kento Yonezawa
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Relationship of the photoreactions between two sensor domains in PYP-Phytochrome Related Protein2014

    • Author(s)
      Keito Yoshida
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of a microfluidics-based auto-sample changer for solution X-ray scattering2014

    • Author(s)
      Ryuji Okabe
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2014

    • Author(s)
      Hiroko Tanaka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of the denatured structure of staphylococcal nuclease by tryptophan triplet state lifetime measurements2014

    • Author(s)
      Sadatoshi Aoyagi
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The elucidation of the relationship between β4-5 loop region and the chromophore environment in PYPs2014

    • Author(s)
      Atuhiro Kawamura
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Acid induced proton transfer in Photoactive Yellow Protein2014

    • Author(s)
      Mai Arakawa
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The potential uses of structure and function elements2014

    • Author(s)
      Hironari Kamikubo
    • Organizer
      The 14th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Korean Institete for Advanced Study(Seoul, Korea)
    • Year and Date
      2014-09-17 – 2014-09-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Protein Dynamics and Structure Studied by Neutron Scattering2014

    • Author(s)
      Mikio Kataoka
    • Organizer
      The 2nd International Symposium on Science
    • Place of Presentation
      J-PARC(茨城県つくば市)
    • Year and Date
      2014-07-12 – 2014-07-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Rhodobacter capsulatus PYP結晶構造に見られる活性中間体様構造の解析/Crystal structural analysis for active-state like structure of Rhodobacter capsulatus PYP2014

    • Author(s)
      山崎洋一
    • Organizer
      第14 回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(神奈川県横浜市)
    • Year and Date
      2014-06-25 – 2014-06-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] FRET analysis of denatured staphylococcal nuclease2014

    • Author(s)
      Mikio Kataoka
    • Organizer
      8th IUPAP International Conference on Biological Physics
    • Place of Presentation
      Institute of Physics, Chinese Academy of Sceince(Beijing, China)
    • Year and Date
      2014-06-18 – 2014-06-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structure and photoreaction of photoactive yellow protein2014

    • Author(s)
      Mikio Kataoka
    • Organizer
      第1回ピコバイオリジー研究所国際シンポジウム
    • Place of Presentation
      理化学研究所播磨事業所、兵庫県佐用郡佐用町
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 核酸分解酵素staphylococcal nucleaseの分子動力学に対する時系列解析:活性低下における水、リガンド、ループの関係性2014

    • Author(s)
      冨士香奈
    • Organizer
      第69回日本物理学会年次大会
    • Place of Presentation
      東海大学湘南キャンパス、神奈川県、平塚市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Is tertiary structure required for a specific function?2013

    • Author(s)
      Mikio Kataoka
    • Organizer
      The 8th Asian Biophysics Association Symposium
    • Place of Presentation
      Ramada Plaza Jeju Hotel, Jeju, Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] The role of the flexible loop in Staphylococcal nuclease on its catalytic activity2013

    • Author(s)
      Rumi Shiba
    • Organizer
      The 8th Asian Biophysics Association Symposium
    • Place of Presentation
      Ramada Plaza Jeju Hotel, Jeju, Korea
    • Related Report
      2013 Annual Research Report
  • [Presentation] Photoactive Yellow Protein中の低障壁水素結合と近傍アルギニンの解離性2013

    • Author(s)
      上久保裕生
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館、鳥取県鳥取市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 黄色ブドウ球菌由来核酸分解酵素におけるループの揺らぎと機能の関係2013

    • Author(s)
      芝るみ
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館、鳥取県鳥取市
    • Related Report
      2013 Annual Research Report
  • [Presentation] The mechanism of induced folding of Staphylococcal nuclease2013

    • Author(s)
      Mikio Kataoka
    • Organizer
      Telluride Science Research Center Workshop on Protein Dynamics 2013
    • Place of Presentation
      Telliraide Intermediate School, Telluride, USA
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Excited-state proton transfer in fluorescent Photoactive Yellow Protein containing 7-hydroxycoumarin2013

    • Author(s)
      Dain Novitasari
    • Organizer
      International Conference on Advanced Materials Science and Technology 2013
    • Place of Presentation
      University Gadjah Mada, Yogyakarta, Indonesia
    • Related Report
      2013 Annual Research Report
  • [Presentation] トリプトファン三重項寿命を用いたStaphylococcal nucleaseの主鎖の運動性評価2013

    • Author(s)
      松本昇紘
    • Organizer
      日本物理学会 2013年秋季大会
    • Place of Presentation
      徳島大学、常三島キャンパス、徳島県徳島市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Time-resolved Laue crystallography of photoactive yellow protein with 150psec time resolution2013

    • Author(s)
      Mikio Kataoka
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Translation diffusion dynamics of protein hydration water and its dynamical coupling with protein dynamics2013

    • Author(s)
      Hiroshi Nakagawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Domain-Swapped Oligomerization and Molten Globule State of Cytochrome c2013

    • Author(s)
      Megha Deshpande
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus2013

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] The role of the flexible loop in Staphylococcal nuclease on its catalytic activity2013

    • Author(s)
      Rumi Shiba
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Exited State Proton Transfer of Fluorescent Photoactive Yellow Protein Reconstituted with Hydroxycoumarin2013

    • Author(s)
      Dain Novitasari
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2013

    • Author(s)
      Kento Yonezawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray Solution Scattering Studies of PYP-Phytochrome Related Protein2013

    • Author(s)
      Keito Yoshida
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of unfolded structure of Staphylococcal nuclease mutants by using FRET2013

    • Author(s)
      Emi Ohta
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Main-chain dynamics of staphylococcal nuclease in microsecond timescale2013

    • Author(s)
      Takahiro Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local flexibility of denatured structure and its relationship to non-local interaction in staphylococcal nuclease2013

    • Author(s)
      Toshiyuki Minemura
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Extraction of Function Elements from Green Fluorescent Protein2013

    • Author(s)
      Toshio Morimoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Roles of functional elements transplanted into the artificial enzyme2013

    • Author(s)
      Mai Arakawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray crystal structure analysis of the Photoactive Yellow Protein of Rhodobacter capsulatus2013

    • Author(s)
      Hiroshi Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of Equilibrium of intermediate states of PYP by use of chimera proteins2013

    • Author(s)
      Yoshiaki Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation state of R52 at the PYPM intermediate state2013

    • Author(s)
      Masayoshi Noji
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structure and photoreaction of photoactive yellow protein2013

    • Author(s)
      片岡幹雄
    • Organizer
      The 4th Japan-France Joint Symposium
    • Place of Presentation
      兵庫県佐用郡佐用町
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] イェロープロテインの光反応中の構造変化を見る2013

    • Author(s)
      片岡幹雄
    • Organizer
      日本物理学会第68回年次大会
    • Place of Presentation
      広島大学、広島県東広島市
    • Related Report
      2012 Annual Research Report
  • [Presentation] The role of hydrogen bonding network around the chromophore for the interaction of Rc-PYP2012

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Effect of N-terminal region to the structure formation of PYP2012

    • Author(s)
      Mitsuhiro Sakonji
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus with chimeric proteins2012

    • Author(s)
      Mayu Shimada
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Roles of hydrogen bonds around chromophore in Photoactive Yellow Protein studied by OH-deficient cinnamic acid2012

    • Author(s)
      Masatoshi Narumi
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Photoreaction of PYP domain regulates the structural change during the photoreaction of phytochrome domain of Ppr2012

    • Author(s)
      Keito Yoshida
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Protonation state of arginine 52 near the low barrier hydrogen bond in photoactive yellow protein2012

    • Author(s)
      Kento Yonezawa
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Fluorescence properties of chromophore fluorescence properties of chromophore modified photoactive yellow protein2012

    • Author(s)
      Dian Novitasari
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都テルサ、京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Extraction of the structure elements from PYP2012

    • Author(s)
      Mitsuhiro Sakonji
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都テルサ、京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus with chimeric proteins2012

    • Author(s)
      Mayu Shimada
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都テルサ、京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Roles of hydrogen bonds around chromophore in Photoactive Yellow Protein studied by OH-deficient cinnamic acid2012

    • Author(s)
      Masatoshi Narumi
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都テルサ、京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structural analysis of PYP-Phytochrome Related Protein during its photoreaction by using small angle X-ray scattering2012

    • Author(s)
      Keito Yoshida
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都テルサ、京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 near the Low Barrier Hydrogen Bond in Photoactive Yellow Protein2012

    • Author(s)
      Kento Yonezawa
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都テルサ、京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 結晶構造解析と溶液散乱測定から見た光センサー蛋白質の局所構造と全体構造2012

    • Author(s)
      上久保裕生
    • Organizer
      第38回量子物理化学セミナー
    • Place of Presentation
      横浜市立大学、神奈川県横浜市
    • Related Report
      2012 Annual Research Report
  • [Book] 光と生命の事典2016

    • Author(s)
      片岡幹雄
    • Total Pages
      436
    • Publisher
      朝倉書店
    • Related Report
      2015 Annual Research Report
  • [Book] Molecular Science of Fluctuations Toward Biological Functions2016

    • Author(s)
      F. Schotte, H.-S. Cho, H. Kamikubo, M. Kataoka
    • Total Pages
      270
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Book] Molecular Science of Fluctuations Toward Biological Functions2016

    • Author(s)
      M. Kataoka
    • Total Pages
      270
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Book] 揺らぎ・ダイナミクスと生体機能(寺嶋正秀編)「物理化学的視点から見た生体分子」2013

    • Author(s)
      片岡幹雄
    • Total Pages
      347
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report
  • [Book] ひかりエネルギー革命-グリーンフォトニクス-2012

    • Author(s)
      片岡幹雄
    • Total Pages
      121
    • Publisher
      化学同人
    • Related Report
      2012 Annual Research Report

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Published: 2013-05-15   Modified: 2022-01-27  

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