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Studies on methods of remote monitoring, analysis and evaluation of spatiotemporal functional information on plant communities

Research Project

Project/Area Number 24248043
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Agricultural environmental engineering
Research InstitutionThe University of Tokyo

Principal Investigator

Omasa Kenji  東京大学, 大学院農学生命科学研究科(農学部), 特任研究員 (70109908)

Co-Investigator(Kenkyū-buntansha) 清水 庸  東京大学, 大学院農学生命科学研究科(農学部), 助教 (00323486)
細井 文樹  東京大学, 大学院農学生命科学研究科(農学部), 准教授 (80526468)
羽藤 堅治  愛媛大学, 農学研究科, 教授 (50274345)
Co-Investigator(Renkei-kenkyūsha) ENDO Rousuke  大阪府立大学, 大学院生命環境科学研究科, 講師 (10409146)
NAKABAYASHI Kazushige  明治大学, 農学部, 准教授 (40237368)
Project Period (FY) 2012-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥44,200,000 (Direct Cost: ¥34,000,000、Indirect Cost: ¥10,200,000)
Fiscal Year 2016: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2015: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2014: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2013: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Fiscal Year 2012: ¥11,960,000 (Direct Cost: ¥9,200,000、Indirect Cost: ¥2,760,000)
Keywordsリモートセンシング / 画像計測 / 蒸発散 / 光合成 / クロロフィル蛍光 / 環境影響 / 情報工学 / 植物 / 環境応答
Outline of Final Research Achievements

We have studied on the development of methods of remote monitoring, analysis and evaluation of spatiotemporal functional information on plant communities. For example, we have calculated evapotranspiration index (iTVDI) from satellite (LANDSAT) data in the Kanto region and around Lake Mashu and showed that it is effective for early detection of forest decline. In addition, a new method (FLD-LISP method) and a chlorophyll fluorescence imaging system for obtaining chlorophyll fluorescence parameters under sunlight were developed using O2A band in the absorption band of atmospheric oxygen and applied for diagnosis of photosynthetic function. Furthermore, we have developed methods for phenotyping with high accuracy by measuring the three-dimensional shape, vegetation index and temperature of crops and trees from the ground and drone.

Report

(6 results)
  • 2017 Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (61 results)

All 2018 2017 2016 2015 2014 2013 2012 Other

All Int'l Joint Research (3 results) Journal Article (25 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 20 results,  Open Access: 7 results,  Acknowledgement Compliant: 1 results) Presentation (29 results) (of which Invited: 24 results) Book (4 results)

  • [Int'l Joint Research] The University of Maine(米国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Northeast Normal University(China)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Kyungpook National University/Ewha Womans University(韓国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] 小型UAVを用いたカラマツ林の3次元リモートセンシングとその精度評価2018

    • Author(s)
      鄧 博慶・福丸裕樹・張 煜・青野光子・清水 庸・細井文樹・大政謙次
    • Journal Title

      生態工学

      Volume: 30 Pages: 1-6

    • NAID

      130006327392

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A robust vegetation index for remotely assessing chlorophyll content of dorsiventral leaves across several species in different seasons2018

    • Author(s)
      S. Lu, F. Lu, W. You, Z. Wang, Y. Liu and K. Omasa
    • Journal Title

      Plant Methods

      Volume: 14 Issue: 1 Pages: 1-15

    • DOI

      10.1186/s13007-018-0281-z

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Automatically diagnosing leaf scorching and disease symptoms in trees/shrubs by using RGB image computation with a common statistical algorithm2017

    • Author(s)
      F. Wang, L. Song, K. Omasa and J. Wang
    • Journal Title

      Ecological Informatics

      Volume: 38 Pages: 110-114

    • DOI

      10.1016/j.ecoinf.2017.01.006

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Estimating chlorophyll fluorescence parameters using the joint Fraunhofer line depth and laser-induced saturation pulse (FLD-LISP) method in different plant species2017

    • Author(s)
      P. Rahimzadeh-Bajgiran, B. Tubuxin and K. Omasa
    • Journal Title

      Remote Sensing

      Volume: 9(6), 599 Issue: 6 Pages: 1-17

    • DOI

      10.3390/rs9060599

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 小型UAVを用いた水田におけるイネ群落の3次元リモートセンシングの精度評価2016

    • Author(s)
      鄧 博愛・張 煜・清水 庸・細井文樹・大政謙次
    • Journal Title

      生態工学

      Volume: 28 Pages: 107-112

    • NAID

      130005277037

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Developing and testing a habitat suitability index model for Korean water deer (Hydropotes inermis argyropus) and its potential for landscape management decisions in Korea.2016

    • Author(s)
      J. Jung, Y. Shimizu, K. Omasa, S. Kim and S. Lee.
    • Journal Title

      Animal Cells and Systems

      Volume: 20 Issue: 4 Pages: 218-227

    • DOI

      10.1080/19768354.2016.1210228

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 植物機能リモートセンシングとフェノミクス研究への展開2016

    • Author(s)
      大政謙次
    • Journal Title

      学術の動向

      Volume: 2 Pages: 72-76

    • NAID

      130005154122

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Estimating chlorophyll content and photochemical yield of photosystem II (ΦPSII) using solar-induced chlorophyll fluorescence measurements at different growing stages of attached leaves2015

    • Author(s)
      B. Tubuxin, P. Rahimzadeh-Bajgiran, Y. Ginnan, F. Hosoi and K. Omasa.
    • Journal Title

      J. Exp. Bot.

      Volume: 66 Issue: 18 Pages: 5595-5603

    • DOI

      10.1093/jxb/erv272

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comparing vegetation indices for remote chlorophyll measurement of white poplar and Chinese elm leaves with different adaxial and abaxial surfaces.2015

    • Author(s)
      S. Lu, X. Lu, W. Zhao, Y. Liu, Z. Wang and K. Omasa.
    • Journal Title

      J. Exp. Bot.

      Volume: 66 Issue: 18 Pages: 5625-5637

    • DOI

      10.1093/jxb/erv270

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Differences in NDVI and iTVDI among various land cover types in Kanto region, Japan.2015

    • Author(s)
      T. Tao, Y. Shimizu, K. Omasa.
    • Journal Title

      Eco-Engineering

      Volume: 27 Pages: 111-116

    • NAID

      130005118967

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Estimating leaf inclination angle distribution of broad-leaved trees in each part of the canopies by a high-resolution portable scanning lidar.2015

    • Author(s)
      F. Hosoi and K Omasa
    • Journal Title

      Journal of Agricultural Meteorology

      Volume: 71

    • NAID

      130005075877

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 森林・環境ビッグデータの統合とICT活用2015

    • Author(s)
      大政謙次
    • Journal Title

      森林技術

      Volume: 876 Pages: 2-6

    • NAID

      40020393729

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Estimating rice chlorophyll content and leaf nitrogen concentration with a digital still color camera under natural light2014

    • Author(s)
      Y. Wang, D. Wang, P. Shi, and K. Omasa
    • Journal Title

      Plant Methods

      Volume: 10 Issue: 1 Pages: 36-36

    • DOI

      10.1186/1746-4811-10-36

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 分光反射と温度情報を用いた植生リモートセンシング2014

    • Author(s)
      内藤裕貴・清水 庸・大政 謙次
    • Journal Title

      ビオフィリア

      Volume: 10 Pages: 44-50

    • Related Report
      2014 Annual Research Report
  • [Journal Article] インターネットを利用した農場モニタリングシステム2014

    • Author(s)
      浦野 豊・石谷 学・大政 謙次
    • Journal Title

      ビオフィリア

      Volume: 10 Pages: 57-63

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 植物機能リモートセンシング―植物診断、フェノミクス研究への応用―2014

    • Author(s)
      大政謙次
    • Journal Title

      Eco-Eng.

      Volume: 26 Pages: 51-61

    • NAID

      130004934930

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Estimation of soil moisture using optical/thermal infrared remote sensing in the Canadian Prairies2013

    • Author(s)
      P. Rahimzadeh-Bajgiran, A.A. Berg, C. Champagne, K. Omasa.
    • Journal Title

      ISPRS J. Photogramm. Remote Sens.

      Volume: 83 Pages: 94-103

    • DOI

      10.1016/j.isprsjprs.2013.06.004

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Voxel tree modeling for estimating leaf area density and woody material volume using 3D lidar data2013

    • Author(s)
      F. Hosoi, Y. Nakai, K.Omasa
    • Journal Title

      ISPRS Ann. Photogramm, Remote Sens. and Spatial Inform. Sci.

      Volume: II-5/W2 Pages: 115-120

    • DOI

      10.5194/isprsannals-ii-5-w2-115-2013

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermographic analysis of leaf water and energy information of Japanese spindle and glossy privet trees in low temperature environment2013

    • Author(s)
      F. Wang, K. Omasa, S. Xing and Y. Dong
    • Journal Title

      Ecol. Inform.

      Volume: 16 Pages: 35-40

    • DOI

      10.1016/j.ecoinf.2013.04.006

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 可搬型スキャニングライダーによる水稲の生育ステージ毎の垂直構造計測2013

    • Author(s)
      細井文樹・大政謙次
    • Journal Title

      関東の農業気象

      Volume: 39 Pages: 2-5

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Relationships between the Photochemical Reflectance Index (PRI) and chlorophyll fluorescence parameters and plant pigment indices at different leaf growth stages2012

    • Author(s)
      P. Rahimzadeh-Bajgiran, M. Munehiro and K. Omasa.
    • Journal Title

      Photosynth. Res.

      Volume: 113 Issue: 1-3 Pages: 261-271

    • DOI

      10.1007/s11120-012-9747-4

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Image measurements of leaf scorches on landscape trees subjected to extreme meteorological events.2012

    • Author(s)
      F. Wang and K Omasa
    • Journal Title

      Ecological Informatics

      Volume: 12 Pages: 16-22

    • DOI

      10.1016/j.ecoinf.2012.07.005

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Summer-season differences in NDVI and iTVDI among vegetation cover types in Lake Mashu, Hokkaido, Japan using Landsat TM data2012

    • Author(s)
      H. Naito, P. Rahimzadeh-Bajgiran, Y. Shimizu, F. Hosoi and K. Omasa.
    • Journal Title

      Environ. Control Biol.

      Volume: 50 Pages: 163-171

    • NAID

      10030968153

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Accurate detection of tree apexes in coniferous canopies from airborne scanning lidar images based on crown-extraction filtering2012

    • Author(s)
      F. Hosoi, H. Matsugami, K. Watanuki, Y. Shimizu and K. Omasa.
    • Journal Title

      J. Appl. Remote Sens.

      Volume: 6 Issue: 1 Pages: 063502-063502

    • DOI

      10.1117/1.jrs.6.063502

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 着葉期の落葉広葉樹を対象とした可搬型スキャニングライダーデータからの非同化器官の抽出2012

    • Author(s)
      根来昇吾・細井文樹・大政謙次
    • Journal Title

      生態工学

      Volume: 24 Pages: 51-55

    • NAID

      10030602907

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 陸域生態系機能のイメージングー細胞~地球環境2017

    • Author(s)
      大政謙次
    • Organizer
      日本学術会議公開シンポジウム「次世代統合バイオイメージング研究の展望」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 植物機能リモートセンシングと ICT ―基礎~フェノタイピング、スマート農業2017

    • Author(s)
      大政謙次
    • Organizer
      (公財)光科学技術研究振興財団「平成 29 年度 農業・工業原材料生産と光技術研究会」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 植物機能のリモートセンシングと時空間情報解析2016

    • Author(s)
      大政謙次
    • Organizer
      第57回大気環境学会年会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 植物の反応の可視化とIoT2016

    • Author(s)
      大政謙次
    • Organizer
      第2回農業電化シンポジウム
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] クロロフィル蛍光の画像化の歴史―細胞から衛星観測までー2016

    • Author(s)
      大政謙次
    • Organizer
      日本リモートセンシング学会平成28年秋期大会
    • Related Report
      2016 Annual Research Report
  • [Presentation] スマート農業の展開と方向2016

    • Author(s)
      大政謙次
    • Organizer
      栃木県「スマート農業とちぎ推進フォーラム」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 植物環境応答のセンシングと空間情報解析2016

    • Author(s)
      大政謙次
    • Organizer
      日本学術会議公開シンポジウム「越境大気汚染と酸性雨―現場から将来予測までー」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 生物環境情報工学分野からみたフューチャーグリーン2016

    • Author(s)
      大政謙次
    • Organizer
      JSTワークショップ「フューチャーグリーン」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Imaging techniques applied in studying plant structure and functioning2015

    • Author(s)
      K. Omasa
    • Organizer
      Seminar in Shandong University
    • Place of Presentation
      Jinan(China)
    • Year and Date
      2015-12-22
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Thermographic imaging techniques in agriculture and forestry.2015

    • Author(s)
      K. Omasa
    • Organizer
      Seminar in Shandong Academy of Forestry
    • Place of Presentation
      Jinan(China)
    • Year and Date
      2015-12-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 植物機能情報と衛星を用いた農業環境リモートセンシング2015

    • Author(s)
      大政謙次
    • Organizer
      東京大学産学連携本部「宇宙サロン」
    • Place of Presentation
      東京大学(東京都,文京区)
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 植物の環境応答イメージングとフェノミクス研究への展開2015

    • Author(s)
      大政謙次
    • Organizer
      国立環境研究所シンポジウム「環境変動と生物」
    • Place of Presentation
      国立環境研究所(茨城県,つくば市)
    • Year and Date
      2015-12-11
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 生態系リモートセンシングー細胞から植生へ、2次元から3次元へー生態系リモートセンシングー細胞から植生へ、2次元から3次元へー2015

    • Author(s)
      大政謙次
    • Organizer
      日本学術会議公開シンポジウム「生態系計測・モニタリングの最前線」
    • Place of Presentation
      日本学術会議(東京都港区)
    • Year and Date
      2015-10-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 植物の反応をみる:生物環境調節との出会いから国際的な研究交流へ2015

    • Author(s)
      大政謙次
    • Organizer
      日本生物環境工学会2015年宮崎大会
    • Place of Presentation
      シーガイアコンベンションセンター(宮崎県,宮崎市)
    • Year and Date
      2015-09-08
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] MODIS時系列データによる常緑針葉樹林の春の植物季節の推定2015

    • Author(s)
      清水 庸・大政謙次
    • Organizer
      日本農業気象学会2015年全国大会
    • Place of Presentation
      つくば
    • Year and Date
      2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 植物機能リモートセンシングとフェノミクス研究への展開2015

    • Author(s)
      大政謙次
    • Organizer
      学術会議の公開シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2015-03-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Modern agriculture and imaging techniques2014

    • Author(s)
      K. Omasa
    • Organizer
      Seminar of School of Geographical Sciences, Northeast Normal University
    • Place of Presentation
      Changchun
    • Year and Date
      2014-10-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Remote sensing of plant phenotyping and vegetation functioning-from cell to canopy and 2D to 3D-.2014

    • Author(s)
      K Omasa.
    • Organizer
      CIGR 18th World Congress,
    • Place of Presentation
      Beijing
    • Year and Date
      2014-09-16 – 2014-09-19
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Imaging techniques from the cell to the canopy level -from 2D to 3D composite imaging.2014

    • Author(s)
      K Omasa
    • Organizer
      Seminar of College of Resources and Environment, University of Chinese Academy of Sciences.
    • Place of Presentation
      Beijing
    • Year and Date
      2014-09-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Comparing steady-state solar induced and artificial light induced chlorophyll fluorescence measurements at different growing stages of leaves2014

    • Author(s)
      B. Tubuxin, Y. Ginnan and K. Omasa
    • Organizer
      3rd. Int. Plant Phenotyping symposium
    • Place of Presentation
      Chennai, India
    • Related Report
      2013 Annual Research Report
  • [Presentation] Field-based phenotyping analyses of rice growth components on different levels of nitrogen fertilizer using vegetation indices derived from multispectral images2014

    • Author(s)
      H. Naito, M. G. Selvaraj, M. O. Valencia, F. Hosoi, Y. Shimizu, S. Ogawa, M. Ishitani and K. Omasa
    • Organizer
      3rd. Int. Plant Phenotyping symposium
    • Place of Presentation
      Chennai, India
    • Related Report
      2013 Annual Research Report
  • [Presentation] Field based phenotyping analysis of rice traits using vegetation indices under different nitrogen levels2014

    • Author(s)
      H. Naito, M. G. Selvaraj, M. O. Valencia, F. Hosoi, Y. Shimizu, S. Ogawa, M. Ishitani and K. Omasa
    • Organizer
      ISAM 2014
    • Place of Presentation
      Sapporo
    • Related Report
      2013 Annual Research Report
  • [Presentation] 植物機能イメージングとフェノミクス研究への展開ー細胞から群落へ、2次元から3次元へー2013

    • Author(s)
      大政謙次
    • Organizer
      日本生物環境工学会
    • Place of Presentation
      高松
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 3D imaging of plant structure and functioning2012

    • Author(s)
      K. Omasa
    • Organizer
      Ebernburg-Workshop "Leaf Optics"
    • Place of Presentation
      Ebernburg
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 画像情報等の作物生産における温暖化対応技術への応用

    • Author(s)
      大政謙次
    • Organizer
      日本学術会議公開シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 3D imaging from the cell to the canopy

    • Author(s)
      K. Omasa
    • Organizer
      ACPFG seminar in University of Adelaide
    • Place of Presentation
      Adelaide
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Imaging techniques from the cell to the canopy level-from 2D to 3D composite imaging-

    • Author(s)
      K. Omasa
    • Organizer
      CzechGlobe seminar
    • Place of Presentation
      Brno
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 植物機能リモートセンシングとフェノミクス研究への展開

    • Author(s)
      大政謙次
    • Organizer
      農業情報学会 2012年度秋期シンポジウム
    • Place of Presentation
      帯広
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 植物機能のリモートセンシング―細胞から植生へ、2次元から3次元へ―

    • Author(s)
      大政謙次
    • Organizer
      日本生態学会第60回大会
    • Place of Presentation
      静岡
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] 植物機能リモートセンシングと植物診断、フェノミクス研究への応用 閉鎖生態系・生態工学ハンドブック2015

    • Author(s)
      大政謙次
    • Publisher
      アドスリー
    • Related Report
      2015 Annual Research Report
  • [Book] リモートセンシング.  「スマート農業」2014

    • Author(s)
      大政謙次
    • Publisher
      農林統計出版
    • Related Report
      2014 Annual Research Report
  • [Book] 気象リスク適応のためのリモートモニタリング 「スマート農業」2014

    • Author(s)
      内藤裕貴・細井文樹・大政謙次
    • Publisher
      農林統計出版
    • Related Report
      2014 Annual Research Report
  • [Book] 太陽光植物工場の新展開 (野口伸他編著)2012

    • Author(s)
      大政謙次
    • Publisher
      養賢堂
    • Related Report
      2012 Annual Research Report

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Published: 2013-05-15   Modified: 2022-01-31  

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