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Exploring therapeutic target kinases by comprehensive genome analysis of lung adenocarcinoma

Research Project

Project/Area Number 24300345
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Clinical oncology
Research InstitutionNational Cancer Center Japan

Principal Investigator

TSUCHIHARA Katsuya  独立行政法人国立がん研究センター, 早期探索臨床研究センター, 分野長 (00415514)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥19,630,000 (Direct Cost: ¥15,100,000、Indirect Cost: ¥4,530,000)
Fiscal Year 2014: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2013: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Keywords肺がん / ゲノム / キナーゼ / 分子標的薬 / ゲノムスクリーニング / 肺腺癌 / 網羅的ゲノム解析 / キナーゼ阻害剤 / 分子標的治療 / 肺線癌 / RET
Outline of Final Research Achievements

We conducted a comprehensive genome analysis of 97 cases of lung adenocarcinoma and explore the mutated protein kinases those could be potential therapeutic targets. All the cases harbored one or more altered kinase or related genes involved in cell proliferation. To establish a cell line-based experimental system that represents the diversity of lung adenocarcinoma, comprehensive genome and epigenome data of 26 cell lines were collected and these data are open for public at our database (http://dbtss.hgc.jp/). We found that LC-2/ad cells express the CCDC6-RET fusion gene and a RET-targeting compound, vandetanib exhibited anti-tumor effect. These findings and experiences encouraged us and other researchers to establish a nation-wide lung cancer genome screening platform and to accomplish investigator-initiated clinical trials targeting lung cancers with rare driver mutations/alterations.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (19 results)

All 2015 2014 2013 2012 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 5 results,  Acknowledgement Compliant: 2 results) Presentation (7 results) (of which Invited: 2 results) Remarks (2 results)

  • [Journal Article] Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment.2015

    • Author(s)
      Suzuki A, Matsushima K, Makinoshima H, Sugano S, Kohno T, Tsuchihara K, Suzuki Y.
    • Journal Title

      Genome Biol.

      Volume: 16 Issue: 1 Pages: 66-66

    • DOI

      10.1186/s13059-015-0636-y

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Beyond ALK-RET, ROS1 and other oncogene fusions in lung cancer.2015

    • Author(s)
      Kohno T, Nakaoku T, Tsuta K, Tsuchihara K, Matsumoto S, Yoh K, Goto K.
    • Journal Title

      Transl Lung Cancer Res.

      Volume: 4 Pages: 156-164

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.2015

    • Author(s)
      Suzuki A, Wakaguri H, Yamashita R, Kawano S, Tsuchihara K, Sugano S, Suzuki Y, Nakai K.
    • Journal Title

      Nucleic Acids Res.

      Volume: 43 Issue: D1 Pages: 1-5

    • DOI

      10.1093/nar/gku1080

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines.2014

    • Author(s)
      Ayako Suzuki , Hideki Makinoshima, Hiroyuki Wakaguri, Hiroyasu Esumi, Sumio Sugano, Takashi Kohno, Katsuya Tsuchihara, Yutaka Suzuki
    • Journal Title

      Nucleic Acids Reseach

      Volume: 42(22) Issue: 22 Pages: 13557-13572

    • DOI

      10.1093/nar/gku885

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epidermal growth factor receptor (EGFR) signaling regulates global metabolic pathways in EGFR-mutated lung adenocarcinoma.2014

    • Author(s)
      Makinoshima H, Takita M, Matsumoto S, Yagishita A, Owada S, Esumi H, Tsuchihara K.
    • Journal Title

      J Biol Chem.

      Volume: 289 Pages: 20813-23

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification of a lung adenocarcinoma cell line with CCDC6-RET fusion gene and the effect of RET inhibitors in vitro and in vivo.2013

    • Author(s)
      Makito Suzuki
    • Journal Title

      Cancer Science

      Volume: in press Issue: 7 Pages: 896-903

    • DOI

      10.1111/cas.12175

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RET fusion gene: translation to personalized lung cancer therapy.2013

    • Author(s)
      Kohno Tほか
    • Journal Title

      Cancer Sci

      Volume: 104 Issue: 11 Pages: 1396-1400

    • DOI

      10.1111/cas.12275

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and characterization of cancer mutations in Japanese lung adenocarcinoma without sequencing of normal tissue counterparts.2013

    • Author(s)
      Suzuki Aほか
    • Journal Title

      PLoS One

      Volume: 8 Issue: 9 Pages: e73484-e73484

    • DOI

      10.1371/journal.pone.0073484

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distinct clinicopathologic characteristics of lung mucinous adenocarcinoma with KRAS mutation.2013

    • Author(s)
      Ichinokawa Hほか
    • Journal Title

      Human Pathol

      Volume: 44 Issue: 12 Pages: 2636-2642

    • DOI

      10.1016/j.humpath.2013.05.026

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinicopathological characteristics of EGFR mutated adenosquamous car cinoma of the lung.2013

    • Author(s)
      Shiozawa T, ほか
    • Journal Title

      Pathol Int.

      Volume: 63 Issue: 2 Pages: 77-84

    • DOI

      10.1111/pin.12033

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 進行固形がん生検組織を用いたマルチプレックス遺伝子変異解析の臨床応用2013

    • Author(s)
      土原 一哉
    • Organizer
      第24回日本消化器癌発生学会総会
    • Place of Presentation
      金沢市
    • Related Report
      2013 Annual Research Report
  • [Presentation] がんゲノムの網羅的解析とその臨床応用2013

    • Author(s)
      土原 一哉
    • Organizer
      第72回日本癌学会学術集会総会
    • Place of Presentation
      横浜市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 次世代シークエンスの肺癌治療への展開2013

    • Author(s)
      土原 一哉
    • Organizer
      第54回日本肺癌学会総会
    • Place of Presentation
      東京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] The single nucleotide resolution landscape of somatic mutations of lung adenocarcinoma2012

    • Author(s)
      土原一哉
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡市(招待講演)
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] 網羅的がんゲノム変異解析と個別化医療への応用2012

    • Author(s)
      上原一哉
    • Organizer
      第71回日本癌学会学術集会
    • Place of Presentation
      札幌市
    • Year and Date
      2012-09-21
    • Related Report
      2012 Annual Research Report
  • [Presentation] 上原一哉2012

    • Author(s)
      上原一哉
    • Organizer
      網羅的がんゲノム変異解析の分子標的治療個別化への応用
    • Place of Presentation
      北九州市(招待講演)
    • Year and Date
      2012-06-29
    • Related Report
      2012 Annual Research Report
  • [Presentation] ゲノム診断による個別化医療

    • Author(s)
      土原 一哉
    • Organizer
      第17回日本がん分子標的治療学会学術集会
    • Place of Presentation
      京都市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] DataBase of Transcriptional Start Sites, DBTSS

    • URL

      http://dbtss.hgc.jp/

    • Related Report
      2014 Annual Research Report
  • [Remarks]

    • URL

      http://epoc.ncc.go.jp/about/staff/tsuchihara.php

    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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