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Analysis of pioneer microbial community and vegetation recovery in the volcanic deposits from the Miyake-jima 2000 eruption

Research Project

Project/Area Number 24310003
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Environmental dynamic analysis
Research InstitutionIbaraki University

Principal Investigator

OHTA Hiroyuki  茨城大学, 農学部, 教授 (80168947)

Co-Investigator(Kenkyū-buntansha) NARISAWA Kazuhiko  茨城大学, 農学部, 教授 (90431650)
KAMIJO Takashi  筑波大学, 大学院生命環境科学研究科, 教授 (10301079)
Co-Investigator(Renkei-kenkyūsha) NANBA Kenji  福島大学, 共生システム理工学類, 教授 (70242162)
Research Collaborator GUO Yong  東京農工大学, 大学院連合農学研究科
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2014: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywords土壌微生物 / 三宅島2000年噴火 / 植生遷移 / エンドファイト / リボソームRNA遺伝子 / 微生物遷移 / 荒廃地再生 / 環境 / 微生物 / 土壌学 / 生態学 / 菌類 / 新生火山灰 / 根圏微生物 / 土壌微生物遷移
Outline of Final Research Achievements

Volcanic eruptions offer great opportunities for understanding of terrestrial ecosystem formation. In this study, we investigated the 2000 eruption-affected sites and analyzed the newly exposed volcanic substrates in the island of Miyake. Our results showed that iron-oxidizing chemolithoautotrophic bacteria were pioneer microbes and played an important role in the input of carbon and nitrogen from the atmosphere. We identified Miscanthas condensatus as a major pioneer plant after the 2000 eruption. The rhizosphere bacterial community of this plant was predominated by Beta- and Gammaproteobacteria and gradually replaced by Alphaproteobacteria and Actinobacteria in response to the increase in the plant cover percentage. Bradyrhizobium, Rhizobium, Granulicella, and Arthrobacter were assumed as key microbes in the pioneer plant colonization. In conclusion, our study revealed the relationships between soil formation, vegetation development, and microbial community structure.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (25 results)

All 2015 2014 2013 2012

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (22 results) (of which Invited: 7 results)

  • [Journal Article] 土壌細菌の分類および群集解析に関する研究2014

    • Author(s)
      太田寛行
    • Journal Title

      日本土壌肥料学雑誌

      Volume: 85 Pages: 393-396

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of Early Microbial Communities on Volcanic Deposits along a Vegetation Gradient on the Island of Miyake, Japan2014

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Wataru Suda, Seok-won Kim, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo, Kazuhiko Narisawa, and Hiroyuki Ohta
    • Journal Title

      Microbes and Environments

      Volume: 29 Issue: 1 Pages: 38-49

    • DOI

      10.1264/jsme2.ME13142

    • NAID

      130003390913

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of Leptospirillum ferrooxidans strain C2-3 isolated from fresh volcanic ash deposit on the island of Miyake2012

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Kenshiro Oshima, Seok-Won Kim, Masahira Hattori, Takashi Kamijo and Hiroyuki Ohta
    • Journal Title

      Japan, Journal of Bacteriology

      Volume: 194 Issue: 15 Pages: 4122-4123

    • DOI

      10.1128/jb.00696-12

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 土壌を創る微生物の力-火山噴火後の環境再生2015

    • Author(s)
      太田寛行
    • Organizer
      日本土壌微生物学会2015年度大会・市民公開シンポジウム
    • Place of Presentation
      つくば国際会議場,つくば市
    • Year and Date
      2015-05-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 土壌生成プロセスにおける微生物の役割2015

    • Author(s)
      太田寛行,西澤智康
    • Organizer
      日本土壌微生物学会2015年度大会
    • Place of Presentation
      つくば国際会議場,つくば市
    • Year and Date
      2015-05-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Change in rhizosphere microbial community of Miscanthus condensatus, a pioneer plant on recent Miyake-jima volcanic deposit, during the vegetation development2014

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, and Hiroyuki Ohta
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松,浜松市
    • Year and Date
      2014-10-22 – 2014-10-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] 土壌細菌の分類および群集解析に関する研究2014

    • Author(s)
      太田寛行
    • Organizer
      日本土壌肥料学会2014年度東京大会記念講演会
    • Place of Presentation
      たましんTISURUホール,立川市
    • Year and Date
      2014-09-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular analysis of microbial communities associated with roots of pioneer grass Miscanthus condensatus at different colonization stages on recent Miyake-jima volcanic deposit2014

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, and Hiroyuki Ohta
    • Organizer
      日本土壌肥料学会2014年度東京大会
    • Place of Presentation
      東京農工大学,小金井市
    • Year and Date
      2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Iron-oxidizing chemolithoautotrophy contributes to the input of C and N from the atmosphere to the early acidic volcanic environment in the Island of Miyake, Japan2014

    • Author(s)
      Hiroyuki Ohta, Reiko Fujimura, Momoko Sato, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo
    • Organizer
      The 15th International Symposium on Microbial Ecology
    • Place of Presentation
      ソウル,韓国
    • Year and Date
      2014-08-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Bacterial and fungal communities associated with roots of a pioneer grass, Miscanthus condensatus, colonized the recent volcanic deposits in the Island of Miyake, Japan2014

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      The 15th International Symposium on Microbial Ecology
    • Place of Presentation
      ソウル,韓国
    • Year and Date
      2014-08-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Microbial ecology in early soil development2014

    • Author(s)
      Hiroyuki Ohta, Reiko Fujimura, Yong Guo, Tomoyasu Nishizawa, and Yoshinori Sato
    • Organizer
      The 6th Korea-Japan-Taiwan International Symposium on Microbial Ecology
    • Place of Presentation
      ソウル,韓国
    • Year and Date
      2014-08-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Early microbial succession in recent unvegetated volcanic deposits of Miyake-jima Island, Japan2014

    • Author(s)
      Hiroyuki Ohta, Reiko Fujimura, Yong Guo, Yoshinori Sato, Tomoyasu Nishizawa, Wataru Suda, Seok-Won Kim, Kenshiro Oshima, Masahira Hattori, and Takashi Kamijo
    • Organizer
      20th World Congress of Soil Science
    • Place of Presentation
      ICC Jeju, Jeju, Korea
    • Year and Date
      2014-06-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Early microbial succession on volcanic deposits along a vegetation gradient in the Island of Miyake, Japan2014

    • Author(s)
      Hiroyuki Ohta, Yong Guo, Reiko Fujimura, Yoshinori Sato and Takashi Kamijo
    • Organizer
      The 6th International Congress of East Asian Federation of Ecological Societies (EAFES)
    • Place of Presentation
      Huandao Tide Hotel, Haikou, China
    • Year and Date
      2014-04-10
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Invited
  • [Presentation] Root-associated microbial diversity of a pioneer grass, Miscanthus condensatus, on the recent volcanic deposits in the Island of Miyake, Japan2014

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo and Hiroyuki Ohta
    • Organizer
      The 6th International Congress of East Asian Federation of Ecological Societies (EAFES)
    • Place of Presentation
      Huandao Tide Hotel, Haikou, China
    • Year and Date
      2014-04-10
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
  • [Presentation] 三宅島噴火後の土壌微生物相変遷のメタゲノム的解析2014

    • Author(s)
      太田寛行,藤村玲子
    • Organizer
      農業環境技術研究所30周年記念セミナー
    • Place of Presentation
      秋葉原コンベンションホール
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Changes in microbial communities along vegetation transect on newly deposited volcanic ash in the Island of Miyake, Japan2013

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Wataru Suda, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo and Hiroyuki Ohta
    • Organizer
      日本土壌微生物学会2013年度大会
    • Place of Presentation
      東京農工大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Characterization of Early Soil Microbial Communities along an Elevational Transect from Unvegetated to Woody Site in the Island of Miyake, Japan2013

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Wataru Suda, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      21st International Symposium on Environmental Biogeochemistry
    • Place of Presentation
      華中農業大学,中国
    • Related Report
      2013 Annual Research Report
  • [Presentation] 三宅島における植生回復と菌類エンドファイトの関わりについて2013

    • Author(s)
      臼井絵里香,太田寛行,成澤才彦
    • Organizer
      第29回日本微生物生態学会大会
    • Place of Presentation
      鹿児島大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Characterization of microbial communities associated with the pioneer plant Miscanthus condensatus colonized the fresh volcanic deposits in the Island of Miyake, Japan2013

    • Author(s)
      Yong Guo, Reiko Fujimura, Ken Hosokawa, Momoko Sato, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo and Hiroyuki Ohta
    • Organizer
      第29回日本微生物生態学会大会
    • Place of Presentation
      鹿児島大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] SIP (Stable Isotope Probing) 法を用いた三宅島火山灰堆積物における微生物群集構造の解析2013

    • Author(s)
      佐藤桃子、藤村玲子、佐藤嘉則、上條隆志、太田寛行
    • Organizer
      第29回日本微生物生態学会大会
    • Place of Presentation
      鹿児島大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] 三宅島2000年噴火後の植生回復への菌類エンドファイトの関わりについて2012

    • Author(s)
      臼井絵里香, 太田寛行, 成澤才彦
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学, 豊橋市
    • Year and Date
      2012-09-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] メタゲノム解析から明らかにされた三宅島初成土壌微生物生態系の遷移2012

    • Author(s)
      藤村玲子, 金錫元, 佐藤嘉則, 須田亙, 西澤智康, 大島健志朗, 服部正平, 上條隆志, 太田寛行
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学, 豊橋市
    • Year and Date
      2012-09-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] Effect of vegetation cover on bacterial diversity of volcanic deposits in Miyake-jima, Japan2012

    • Author(s)
      Y. Guo, R. Fujimura, Y. Sato, W. Suwata, K. Oshima, M. Hattori, T. Kamijo, H. Ohta
    • Organizer
      日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学, 鳥取市
    • Year and Date
      2012-09-04
    • Related Report
      2012 Annual Research Report
  • [Presentation] Bacterial community of the fresh volcanic deposits on barren land, grassland, and woodland in the Island of Miyake, Japan, as revealed by pyrosequencing-based analysis of 16S rRNA genes2012

    • Author(s)
      Y. Guo, R. Fujimura, Y. Sato, K. Oshima, M. Hattori, T. Kamijo, H. Ohta
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      ベラセンター, コペンハーゲン
    • Year and Date
      2012-08-21
    • Related Report
      2012 Annual Research Report
  • [Presentation] Metagenomic analysis of pioneer microbial community in young volcanic ash deposit on the island of Miyake, Japan.2012

    • Author(s)
      R.Fujimura, S.-W. Kim, Y. Sato, W. Suda, T. Nishizawa, K. Oshima, M. Hattori, T. Kamijo, H. Ohta
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      ベラセンター, コペンハーゲン
    • Year and Date
      2012-08-21
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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