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Novel high-sensitivity detection method of virus using a hairpin primer PCR

Research Project

Project/Area Number 24310165
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Chemical biology
Research InstitutionNational Defense Medical College (2014-2015)
Osaka University (2012-2013)

Principal Investigator

Fumie Takei  防衛医科大学校(医学教育部医学科進学課程及び専門課程、動物実験施設、共同利用研究, 医学教育部医学科進学課程, 准教授 (30252711)

Co-Investigator(Renkei-kenkyūsha) NAKAKTNI Kazuhiko  大阪大学, 産業科学研究所, 教授 (70237303)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2014: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2013: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2012: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
KeywordsPCR / 蛍光分子 / 遺伝子検出 / ウイルス検出 / グアニン / シトシンバルジ構造 / RT-PCR / へアピンプライマー
Outline of Final Research Achievements

We have previously described a hairpin primer PCR (HP-PCR) method using a primer having a hairpin tag at the 5′ end and a fluorescent dye (2,7-diamino-1,8-naphthyridine derivative [DANP]) bound to the cytosine bulge (C-bulge) embedded in the hairpin-tag. It was turn-off type of system. In this research, we tried to develop the high-sensitivity detection method using a HP-PCR and it applied to detect some kinds of virus.
In this research, we developed the new type of PCR monitoring system using DANP bound to the primers as a covalent and in which the fluorescent signal increases as PCR progresses. This was a turn-on of PCR using fluorescently and modified DNA.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (16 results)

All 2015 2014 2013

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (11 results) (of which Int'l Joint Research: 4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Cytosine-bulge dependent fluorescence quenching for real-time hairpin primer PCR2014

    • Author(s)
      Takei, F.; Chen, X.; Yu, G.; Shibata, T.; Dohno, C.; Nakatani, K.
    • Journal Title

      Chem. Commun.

      Volume: 50 Issue: 96 Pages: 15195-15198

    • DOI

      10.1039/c4cc06780k

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Detection of hepatitis C virus by single-step hairpin primer RT-PCR2014

    • Author(s)
      Takei, F.; Tani, H.; Matsuura Y.; Nakatani, K.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 24 Issue: 1 Pages: 394-396

    • DOI

      10.1016/j.bmcl.2013.10.021

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The Chemistry of PCR Primers: Concept and Application2013

    • Author(s)
      Takei F, Nakatani K
    • Journal Title

      ISRAEL JOURNAL OF CHEMISTRY

      Volume: 53 Issue: 6-7 Pages: 401-416

    • DOI

      10.1002/ijch.201300027

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Novel DANP-Coupled Hairpin RT-PCR for Rapid Detection of Chikungunya Virus.2013

    • Author(s)
      Chen, H.; Takei, F.; Koay, E. S.-C.; Nakatani, K.; Chu, J. J. H.
    • Journal Title

      J. Mol. Diagn.

      Volume: 15 Issue: 2 Pages: 227-233

    • DOI

      10.1016/j.jmoldx.2012.10.004

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Electrical Detection of Polymerase Chain Reaction Using Graphene Field-Effect Transistors2015

    • Author(s)
      M. Okano, V. Rajiv, S. Norhayati, T. Ono, F. Takei, Y. Kanai, Y. Ohno, K. Maehashi, K. Inoue, K. Nakatani and K. Matsumoto
    • Organizer
      28th International Microprocesses and Nanotechnology Conference
    • Place of Presentation
      Toyama
    • Year and Date
      2015-11-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of the turn-on type of PCR using hairpin probe with Cytosine-bulge binding fluorescent molecule2015

    • Author(s)
      Fumie Takei, Kazuhiko Nakatani
    • Organizer
      ISNAC2015
    • Place of Presentation
      Himeji
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] へアピン型プローブを使った蛍光増大型PCR法の開発2015

    • Author(s)
      武井 史恵・中谷 和彦
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      千葉
    • Year and Date
      2015-03-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Toward new FET devices detecting DNA2014

    • Author(s)
      Rajiv Kumar Verma, Akiko Michikawa, Norhayati Binti Sabani, Fumie Takei, and Kazuhiko Nakatani
    • Organizer
      3rd imec Handai International Symposium
    • Place of Presentation
      大阪
    • Year and Date
      2014-12-12
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Novel PCR Monitoring System Using Hairpin Primer Having Cytosine-Bulge and Covalent Binding Fluorescence Molecule2014

    • Author(s)
      Fumie Takei, Xi Chen, Gaigai Yu, Chikara Dohno and Kazuhiko Nakatani
    • Organizer
      XXI IRT
    • Place of Presentation
      POLAND
    • Year and Date
      2014-08-24
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 小分子によるmiR-29a成熟過程の阻害2014

    • Author(s)
      小田部尭広、村田亜沙子、武井史恵、中谷和彦
    • Organizer
      日本ケミカルバイオロジー学会 第9回年会
    • Place of Presentation
      大阪
    • Year and Date
      2014-06-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] New PCR Monitoring System Using DNA Primer Having Cytosine-Bulge and Covalent Binding Fluorescence Molecule2014

    • Author(s)
      Fumie Takei, Gaigai Yu, Xi Chen, Chikara Dohno, Nakatani Kazuhiko
    • Organizer
      The 17th SANKEN international Symposium 2013/ The 11th SANKEN Nanotechnology Symposium
    • Place of Presentation
      大阪大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] New PCR Monitoring System Using DNA Primer Having Cytosine-Bulge and Covalent Binding Fluorescence Molecule2014

    • Author(s)
      Takei F, Yu G, Chen X, Dohno C, Kazuhiko K*
    • Organizer
      The 17th SANKEN international Symposium 2013/ The 11th SANKEN Nanotechnology Symposium
    • Place of Presentation
      大阪
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘアピンプライマーPCR 法を使ったウイルス検出法の開発2013

    • Author(s)
      武井史恵、中谷和彦
    • Organizer
      日本ケミカルバイオロジー学会 第8回年会
    • Place of Presentation
      東京医科歯科大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Synthesis and Application of New Modified DNA Having Cytosine-bulge Binding Fluorescence Molecule2013

    • Author(s)
      Fumie Takei, Gaigai Yu, Xi Chen, Chikara Dohno, Nakatani Kazuhiko
    • Organizer
      Technologies for Medical Diagonosis and Therapy (G3 Meeting)
    • Place of Presentation
      Taiwan
    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
  • [Presentation] ヘアピンプライマーPCR 法を使ったウイルス検出法の開発2013

    • Author(s)
      武井 史恵、中谷 和彦
    • Organizer
      第8回ケミカルバイオロジー学会
    • Place of Presentation
      東京医科歯科大学
    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] PCR法およびPCRキット2014

    • Inventor(s)
      中谷和彦、武井史恵
    • Industrial Property Rights Holder
      中谷和彦、武井史恵
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-169900
    • Filing Date
      2014-08-22
    • Related Report
      2014 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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