• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Split molecular catalyst and its analytical application as a signal amplifier

Research Project

Project/Area Number 24350040
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Analytical chemistry
Research InstitutionKumamoto University

Principal Investigator

IHARA Toshihiro  熊本大学, 自然科学研究科, 教授 (40253489)

Co-Investigator(Kenkyū-buntansha) SAKURAI Toshihiko  鳥取大学, 工学部, 准教授 (10332868)
IMAHORI Tatsushi  東京理科大学, 工学部, 講師 (90433515)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2014: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2013: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2012: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
KeywordsDNA / DNAコンジュゲート / 機能性核酸 / アプタマー / DNAzyme / 金属イオン / シクロデキストリン / 触媒反応 / コンジュゲート / 協同性 / 加水分解 / 金属錯体 / 有機分子触媒 / 再構成触媒 / バイナリープローブ / マイケル付加 / スプリット有機分子触媒 / シグナル増幅反応 / Michael付加 / Aldol反応 / プレートリーダー
Outline of Final Research Achievements

Chemically engineered DNAs, global conformation of which can be modulated in response to specific stimuli, could be allosteric functional DNAs or work as a modulator of the functional nucleic acids such as DNAzymes and aptamers. We showed that two terpyridines built in the DNA backbone form a stable intramolecular 1 : 2 complex, [M(terpy)2]2+, with divalent transition metal ions. Upon complexation, the DNA conjugates adopt a Ω-shape structure in which two distal sequences located outside the terpyridines connect with each other to form a continuous segment with a specific structure or sequence. Such DNA structure is globally controlled by local metal complexation events that can be rationally designed based on general coordination chemistry. This method is regarded as metal ion-directed dynamic sequence edition or DNA splicing. Split DNAzymes with peroxidase-like activity can thus be regulated by several transition metal ions through sequence edition techniques based on the Ω-motif.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (29 results)

All 2015 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Acknowledgement Compliant: 2 results,  Open Access: 3 results) Presentation (19 results) (of which Invited: 4 results) Remarks (2 results)

  • [Journal Article] Metal Ion-directed Dynamic Splicing of DNA through Global Conformational Change by Intramolecular Complexation2015

    • Author(s)
      T. Ihara, H. Ohura, C. Shirahama, T. Furuzono, H. Shimada, H. Matsuura, Y. Kitamura
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 6640-6640

    • DOI

      10.1038/ncomms7640

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Alteration of DNAzyme Activity by Silver Ion2014

    • Author(s)
      S. Urata, T. Miyahata, H. Matsuura, Y. Kitamura, T. Ihara
    • Journal Title

      Chemistry Letters

      Volume: 43 Issue: 7 Pages: 1020-1022

    • DOI

      10.1246/cl.140197

    • NAID

      130004868237

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Potentiometric DNA Sensing Platform Using Redox-Active DNA Probe Pair for Sandwich-Type Dual Hybridization at Indicator Electrode Surface2014

    • Author(s)
      K. Nakano, T. Kimura, Y. Kitamura, T. Ihara, R. Ishimatsu, T. Imato
    • Journal Title

      Journal of Electroanalytical Chemistry

      Volume: 720-721 Pages: 71-75

    • DOI

      10.1016/j.jelechem.2014.03.029

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] In Situ Oxygenous Functionalization of a Graphite Electrode for Enhanced Affinity toward Charged Species and a Reduced Graphene Oxide Mediator2014

    • Author(s)
      M. R. Karim, Y. Ikeda, T. Ide, S. Sugito, K. Toda, YM. R. Karim, Y. Ikeda, T. Ide, S. Sugimoto, K. Toda, Y. Kitamura, T. Ihara, T. Matsui, T. Tani. Kitamura, T. Ihara, T. Matsui, T. Taniguchi, M. Koinuma, Y. Matsumoto, S. Hayami
    • Journal Title

      New Journal of Chemistry

      Volume: 38 Issue: 5 Pages: 2120-2127

    • DOI

      10.1039/c3nj01471a

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rational design for cooperative recognition of specific nucleobases using β-cyclodextrin-modified DNAs and fluorescent ligands on DNA and RNA scaffolds2013

    • Author(s)
      A. Futamura, A. Uemura, T. Imoto, Y. Kitamura, H. Matsuura, C. -X. Wang, T. Ichihashi, Y. Sato, N. Teramae, S. Nishizawa, T. Ihara
    • Journal Title

      Chemistry, A European Journal

      Volume: 19 Issue: 32 Pages: 10526-10535

    • DOI

      10.1002/chem.201300985

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Versatile Allosteric Molecular Devices Based on Reversible Formation of Luminous Lanthanide Complexes2013

    • Author(s)
      Y. Kitamura, S. Yamamoto, Y. Osawa, H. Matsuura, T. Ihara
    • Journal Title

      Chem. Commun.

      Volume: 49 Issue: 3 Pages: 285-287

    • DOI

      10.1039/c2cc36979f

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photochemically relevant DNA-based molecular systems enabling chemical and signaltransductions and their analytical applications2013

    • Author(s)
      Toshihiro Ihara
    • Journal Title

      Journal of Photochemistry and Photobiology C : Photochemistry Reviews

      Volume: 13 Issue: 2 Pages: 148-167

    • DOI

      10.1016/j.jphotochemrev.2012.03.002

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] スプリット型プローブの協同的金属錯体形成を利用するDNAの認識及び検出2012

    • Author(s)
      井原敏博
    • Journal Title

      分析化学

      Volume: 61 Pages: 193-206

    • NAID

      10030135293

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Stimuli-responsive DNA Splicing through Global Conformational Change2015

    • Author(s)
      Toshihiro Ihara, Hiroyuki Ohura, Hidenaga Kodani, Shoma Urata, Yusuke Kitamura
    • Organizer
      日本化学会第95春季年会2015
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Biosensing Based on Catalytic Formation of Luminous Metal Complexes on DNA2015

    • Author(s)
      Rie Ozaki, Yukina Azuma, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      日本化学会第95春季年会2015
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Signal Amplification in Gene Analysis Based on Graphene Oxide and DNA Circuit2015

    • Author(s)
      Takaaki Miyahata, Tomoya Matsuo, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      日本化学会第95春季年会2015
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] 核酸の動的構造をプログラムして増幅型バイオセンサをつくる2015

    • Author(s)
      井原敏博、宮端孝明、尾崎理依、大浦博之、北村裕介
    • Organizer
      第17回生命化学研究会
    • Place of Presentation
      三翠園(高知)
    • Year and Date
      2015-01-08 – 2015-01-09
    • Related Report
      2014 Annual Research Report
  • [Presentation] 相互作用をプログラミングして核酸を分析する2014

    • Author(s)
      井原敏博
    • Organizer
      14-1バイオ・高分子研究会
    • Place of Presentation
      にっしょうかん新館(長崎)
    • Year and Date
      2014-09-26 – 2014-09-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 機能性核酸複合体を反応場とした触媒反応の検索2014

    • Author(s)
      野崎晃広、二村朱香、北村裕介、井原敏博
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] 金属配位基を骨格中に組み込んだ人工核酸によるDNAzymeの活性制御2014

    • Author(s)
      古谷英長、大浦博之、成合裕哉、白浜千里、古園智大、北村裕介、井原敏博
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Bioanalyses through cooperative work of DNA conjugates2014

    • Author(s)
      Toshihito Ihara
    • Organizer
      Sichuan University Research Seminor
    • Place of Presentation
      Sichuan University
    • Year and Date
      2014-05-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] DNA-directed metal complex formation and analytical applications2013

    • Author(s)
      Toshihiro Ihara
    • Organizer
      Asian International Symposium
    • Place of Presentation
      立命館大学、草津市(招待講演)
    • Year and Date
      2013-03-24
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核酸上でのデザインされた分子間相互作用およびその分析化学的応用2013

    • Author(s)
      井原敏博
    • Organizer
      生命理工学研究科セミナー
    • Place of Presentation
      東京工業大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] シクロデキストリン修飾DNA複合体の協同的塩基認識デザイン2013

    • Author(s)
      二村朱香、伊本 剛、北村裕介、佐藤雄介、西澤精一、井原敏博
    • Organizer
      第30回シクロデキストリンシンポジウム
    • Place of Presentation
      くまもと県民交流館パレア
    • Related Report
      2013 Annual Research Report
  • [Presentation] 第30回シクロデキストリンシンポジウム2013

    • Author(s)
      井元千春、二村朱香、北村裕介、井原敏博
    • Organizer
      第30回シクロデキストリンシンポジウム
    • Place of Presentation
      くまもと県民交流館パレア
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] DNAを基体とするスプリット有機触媒の探索2013

    • Author(s)
      二村朱香、天野祐美、北村裕介、今堀龍志、井原敏博
    • Organizer
      第50回化学関連支部合同九州大会
    • Place of Presentation
      北九州国際会議場
    • Related Report
      2013 Annual Research Report
  • [Presentation] Rationally Designed Biomolecular Probing of Specific Nucleobases2013

    • Author(s)
      Akika Futamura, Takeshi Imoto, Yusuke Kitamura, Yusuke Sato, Norio Teramae, Seiichi Nishizawa, Toshihiro Ihara
    • Organizer
      ASIANALYSIS XII
    • Place of Presentation
      九州大学馬出キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] Flexible fluorometry for DNA and RNA analysis using rationally combined two probes2012

    • Author(s)
      Toshihiro Ihara
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学、名古屋市
    • Year and Date
      2012-11-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] Versatile molecular devices based on the reversible formation of luminous lanthanide complexes2012

    • Author(s)
      Toshihiro Ihara
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学、名古屋市
    • Year and Date
      2012-11-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA複合体を基体とする触媒デザイン2012

    • Author(s)
      井原敏博
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学、札幌市
    • Year and Date
      2012-09-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] 希土類金属錯体の可逆的形成を利用したアロステリック分子センサーの開発2012

    • Author(s)
      井原敏博
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学、札幌市
    • Year and Date
      2012-09-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] Rationally designed combinations of two molecules for the detectionof specific nucleobases2012

    • Author(s)
      Toshihiro Ihara
    • Organizer
      11th European Biological Inorganic Chemistry
    • Place of Presentation
      Granada Conference Centre, Granada. Spain
    • Year and Date
      2012-09-12
    • Related Report
      2012 Annual Research Report
  • [Remarks] 井原研究室

    • URL

      http://133.95.131.186/~toshi/

    • Related Report
      2014 Annual Research Report
  • [Remarks]

    • URL

      http://133.95-131.186/~toshi/

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi