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Compilation of heme oxygenase catalysis

Research Project

Project/Area Number 24350081
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Chemistry related to living body
Research InstitutionTohoku University

Principal Investigator

IKEDA-SAITO Masao  東北大学, 多元物質科学研究所, 名誉教授 (70302239)

Co-Investigator(Renkei-kenkyūsha) TOSHITAKA Matsui  東北大学, 多元物質科学研究所, 准教授 (90323120)
MASAKI Unno  茨城大学, 理工学研究科, 教授 (10359549)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2014: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2013: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2012: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywordsヘム / 酸素活性化 / 結晶構造解析 / 反応機構 / 共鳴ラマン散乱 / EPR / 分子動力学 / ヘム分解 / 結核菌 / 水酸化ヘム / ヘムオキシゲナーゼ / ヘム分解酵素 / ベルドヘム / 黄色ブドウ球菌
Outline of Final Research Achievements

Heme oxygenase (HO) converts heme into biliverdin, CO, and iron by three step monooxygenation reactions. Crystal structures of the heme-free, iron-biliverdin and biliverdin complexes have been solved, and the HO protein structural changes associated with the heme-binding and biliverdin-release have been determined by the molecular dynamic simulations. In addition, the final reaction products of a new type heme degradation enzyme, MhuD of M. tuberculosis and its homologue IsdG of S. aureus, have been established. We have found that that these enzyme degrade heme without CO release, demonstrating a new way to degrade heme.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (19 results)

All 2014 2013 2012 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (12 results) (of which Invited: 11 results)

  • [Journal Article] Heme binds to an intrinsically disordered region of Bach2 and alters its conformation2014

    • Author(s)
      M. Watanabe-Matsui, T. Matsumoto, T. Matsui, M. Ikeda-Saito, A. Muto, K. Murayama, and K. Igarashi
    • Journal Title

      Archives of Biochemistry and Biophysics

      Volume: 565巻 Pages: 25-31

    • DOI

      10.1016/j.abb.2014.11.005

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heme utilization by pathogenic bacteria: Not all pathways lead to biliverdin2014

    • Author(s)
      Wilks A, Ikeda-Saito M
    • Journal Title

      Acc. Chem. Res.

      Volume: 47 Issue: 8 Pages: 2291-2298

    • DOI

      10.1021/ar500028n

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Heme degradation by Staphylococcus aureus IsdG and IsdI liberates formaldehyde rather than carbon monoxide2013

    • Author(s)
      Matsui T, Nambu S, Ono Y, Goulding CW, Tsumoto K, Ikeda-Saito M.
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 18 Pages: 3025-3027

    • DOI

      10.1021/bi400382p

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structures of the substrate-free and the product-bound forms of HmuO, a heme oxygenase from Corynebacterium diphtheriae: X-ray crystallography and molecular dynamics investigation2013

    • Author(s)
      Unno, M., Ardevol, A., Rovira, C., and Ikeda-Saito, M.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 288 Issue: 48 Pages: 34443-34458

    • DOI

      10.1074/jbc.m113.486936

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new way to degrade heme: The Mycobacterium tuberculosis enzyme MhuD catalyzes heme degradation without generating CO2013

    • Author(s)
      S. Nambu, T. Matsui, C. W. Goulding, S. Takahashi, M. Ikeda-Saito
    • Journal Title

      J. Biol. Chem.

      Volume: 印刷中 Issue: 14 Pages: 10101-10109

    • DOI

      10.1074/jbc.m112.448399

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A heme degradation enzyme, HutZ, from Vibrio cholerae2012

    • Author(s)
      T. Uchida, et al.
    • Journal Title

      Chem. Commum.

      Volume: 48 Issue: 53 Pages: 6741-6743

    • DOI

      10.1039/c2cc31147j

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallographic studies of heme oxygenase complexed with an unstable reaction intermediate, verdoheme2012

    • Author(s)
      M. Unno
    • Journal Title

      Journal of Inorganic Biochemistry

      Volume: 113 Pages: 102-109

    • DOI

      10.1016/j.jinorgbio.2012.04.012

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] ISDG-like Enzymes Degrade Heme without Release of CO2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      Eighth International Conference on Heme Oxygenases, BioIron and Oxidative Stress
    • Place of Presentation
      Australia, Sydney
    • Year and Date
      2014-10-08 – 2014-10-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Paradigm Shift in Heme Degradation: Heme Oxygenase and IsdG2014

    • Author(s)
      Shusuke Nambu, Toshitaka Matsui, Celia W. Goulding, Kohei Tsumoto, Satoshi Takahashi, Masao Ikeda-Saito
    • Organizer
      Twelfth European Biological Inorganic Chemistry Conference (EuroBIC-12)
    • Place of Presentation
      Switzerland, Zurich
    • Year and Date
      2014-08-24 – 2014-08-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Two Distinct Heme Degradation Enzymes; The Heme Oxygenase and the IsdG-type Enzymes2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      Gordon Research Conference, Chemistry and Biology of Tetrapyrroles
    • Place of Presentation
      U.S.A, Newport
    • Year and Date
      2014-07-20 – 2014-07-25
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Two distinct heme degradation; Heme oxygenase and IsdG2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      XVIII International Conference on Oxygen-Binding and Sensing Proteins
    • Place of Presentation
      UK, Sheffield
    • Year and Date
      2014-07-06 – 2014-07-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Biological Heme Degradation: Not Always Lead to Biliverdin2014

    • Author(s)
      Shusuke Nambu, Toshitaka Matsui, Masao Ikeda-Saito
    • Organizer
      Eighth International Conference on Porphyrins and Phthalocyanines (ICPP-8)
    • Place of Presentation
      Turkey, Istanbul
    • Year and Date
      2014-06-22 – 2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Biological Heme Degradation: Not All Pathways Lead to Biliverdin2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      8th International Conference on Porphyrins and Phythaocyanins
    • Place of Presentation
      Istanbul, Turkey
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] O2 binding, ligand discrimination, and CO production in heme oxygenases2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      XVIII International meeting on Oxygen-binding and sensing proteins
    • Place of Presentation
      Sheffield, United Kingdom
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Two Distinct Heme Degradation Enzymes; The Heme Oxygenase and the IsdG-type Enzymes2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      Gordon Research Conference, Chemistry and Biology of Tetrapyrroles
    • Place of Presentation
      New Port, RI, United States
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Paradigm shifts in heme degradation; heme oxygenate and IsdG2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      12th European Biological Inorganic Chemistry Conference
    • Place of Presentation
      Zurich, Switzerland
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Heme oxygenase and the IsdG-type enzymes2014

    • Author(s)
      Masao Ikeda-Saito
    • Organizer
      8th International Conference on Heme Oxygenases, BioIron and Oxidative Stress
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 生物無機化学とバイオミメティクス研究2013

    • Author(s)
      斉藤正男
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学(招待講演)
    • Year and Date
      2013-03-23
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘム分解酵素の反応機構

    • Author(s)
      齋藤正男
    • Organizer
      第13回蛋白質科学会年会
    • Place of Presentation
      鳥取市
    • Related Report
      2013 Annual Research Report
    • Invited

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Published: 2012-04-24   Modified: 2019-07-29  

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