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Analysis of RNA editing and chemical modification at the single molecule level

Research Project

Project/Area Number 24350084
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

Kawai Kiyohiko  大阪大学, 産業科学研究所, 准教授 (50314422)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,720,000 (Direct Cost: ¥14,400,000、Indirect Cost: ¥4,320,000)
Fiscal Year 2014: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2013: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2012: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Keywords遺伝子診断 / RNA / エピジェネティクス / 1分子計測(SMD) / DNA / 1分子計測(SMD)
Outline of Final Research Achievements

A new detection method was developed for detection of RNA at the single-molecule level. We foucused on that the charge transfer rate through DNA is strongly affected by the DNA sequence and chemical modification of nucleobases. The charge-transfer dynamics in DNA/RNA hybrid was measured as the length of the duration of the off time of blinking of the fluorescence. This enabled the detection of target sequence, allowing for sample sizes as small as 5 fmol (< 0.2 nM, 20 uL). The target can be analyzed under conditions of the automatic measurement of more than 100 samples within 3 h, which makes possible the high-throughput screening needed in RNA diagnosis.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (43 results)

All 2016 2015 2014 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 3 results) Presentation (28 results) (of which Int'l Joint Research: 2 results,  Invited: 7 results) Book (4 results) Remarks (2 results)

  • [Journal Article] Photocurrent generation through charge-transfer processes in noncovalent perylenediimide/DNA complexes2015

    • Author(s)
      Takada, T.; Ido, M.; Ashida, A.; Nakamura, M.; Fujitsuka, M.; Kawai, K.; Majima, T.; Yamana, K.
    • Journal Title

      Chem. Eur. J.

      Volume: 18 Issue: 18 Pages: 6846-4851

    • DOI

      10.1002/chem.201406592

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA Microenvironment Monitored by Controlling Redox Blinking2015

    • Author(s)
      K. Kawai, K. Higashiguchi, A. Maruyama, and T. Majima
    • Journal Title

      ChemPhysChem

      Volume: 16 Issue: 17 Pages: 3590-3594

    • DOI

      10.1002/cphc.201500793

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Triple helix conformation-specific blinking of Cy3 in DNA2015

    • Author(s)
      K. Kawai, A. Maruyama
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 23 Pages: 4861-4864

    • DOI

      10.1039/c5cc00607d

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Blinking Triggered by The change in the solvent accessibility of a fluorescent molecule2014

    • Author(s)
      K. Kawai, T. Koshino, A. Maruyama, T. Majima
    • Journal Title

      Chem. Commun.

      Volume: 50 Issue: 72 Pages: 8743-8746

    • DOI

      10.1039/c4cc00377b

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Detection of single-nucleotide variations by monitoring the blinking of fluorescence induced by charge transfer in DNA2013

    • Author(s)
      K. Kawai, T. Majima, A. Maruyama
    • Journal Title

      ChemBioChem

      Volume: 14 Issue: 12 Pages: 1430-1433

    • DOI

      10.1002/cbic.201300380

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hole Transfer Kinetics of DNA2013

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima
    • Journal Title

      Accounts of Chemical Research

      Volume: 46 Issue: 11 Pages: 2616-2625

    • DOI

      10.1021/ar400079s

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Kinetics of Charge Transfer through DNA across Guanine-Cytosine Repeats Intervened by Adenine-Thymine Base Pair(s)2013

    • Author(s)
      Y. Osakada, K. Kawai, T. Majima
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 86 Issue: 1 Pages: 25-30

    • DOI

      10.1246/bcsj.20120224

    • NAID

      130004153124

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Excess Electron Transfer Dynamics in DNA Hairpins Conjugated with N,N-Dimethylaminopyrene as a Photosensitizing Electron Donor2012

    • Author(s)
      M. Fujitsuka, K. Kawai, T. Majima
    • Journal Title

      Chem. Commun

      Volume: 48 Issue: 89 Pages: 11008-11010

    • DOI

      10.1039/c2cc36054c

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hole Transfer in LNA and 5-Me-2'-deoxyzebularine-Modified DNA2012

    • Author(s)
      K. Kawai, M. Hayashi, T. Majima
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Issue: 22 Pages: 9406-9409

    • DOI

      10.1021/ja302641e

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 蛍光のblinkingを自在に操る分子技術の創出2016

    • Author(s)
      川井 清彦
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府、京田辺市
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Conformational changes of DNA monitored by fluorescence blinking2015

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      PACIFICHEM 2015
    • Place of Presentation
      Hawaii (USA)
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA microenvironment monitored by fluorescence blinking2015

    • Author(s)
      Kiyohiko Kawai, Kenji Higashiguchi, Atsushi Maruyama, and Tetsuro Majima
    • Organizer
      The 42nd International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      兵庫県、姫路市
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA内電荷移動を蛍光のblinkingで見る2015

    • Author(s)
      川井 清彦
    • Organizer
      第 8 回分子ナノテクノロジーセンター講演会
    • Place of Presentation
      姫路(兵庫県大)
    • Year and Date
      2015-03-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 核酸配列1塩基違いの1分子レベル識別2014

    • Author(s)
      川井 清彦
    • Organizer
      名古屋大学革新ナノバイオデバイス研究センターシンポジウム『ケミカルバイオロジーの最前線』
    • Place of Presentation
      名古屋(名古屋大)
    • Year and Date
      2014-11-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Solvent accessibility of the fluorescent molecule monitored by fluorescence blinking2014

    • Author(s)
      Kiyohiko Kawai, Takeshi Koshimo, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      北九州(北九州国際会議場)
    • Year and Date
      2014-11-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA中における蛍光分子三重項励起状態生成によるblinking2014

    • Author(s)
      川井 清彦、古下 嵩、丸山 厚、真嶋 哲朗
    • Organizer
      2014年光化学討論会
    • Place of Presentation
      札幌(北海道大)
    • Year and Date
      2014-10-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] 核酸構造の1分子レベル分析2014

    • Author(s)
      川井 清彦
    • Organizer
      第1回励起物質化学ワークショップ
    • Place of Presentation
      京都(京都大)
    • Year and Date
      2014-09-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 蛍光のblinkingから核酸構造を読む2014

    • Author(s)
      川井 清彦
    • Organizer
      第16回NMMSセミナー
    • Place of Presentation
      名古屋(名古屋大)
    • Year and Date
      2014-09-19
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 1分子レベル電荷分離寿命測定によるDNA 1塩基違いの検出2014

    • Author(s)
      川井 清彦、真嶋 哲朗、丸山 厚
    • Organizer
      第 8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山(岡山大)
    • Year and Date
      2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 分子が蛍になる!?蛍光の点滅を見てDNAを調べよう2014

    • Author(s)
      川井清彦
    • Organizer
      生物有機化学講演会
    • Place of Presentation
      長浜(長浜バイオ大)
    • Year and Date
      2014-07-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 蛍光の点滅(blinking)を見てDNAを調べる2014

    • Author(s)
      川井清彦
    • Organizer
      第 6 回分子ナノテクノロジーセンター講演会
    • Place of Presentation
      姫路(兵庫県大)
    • Year and Date
      2014-06-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 蛍光の点滅(blinking)から核酸の情報を読む2014

    • Author(s)
      川井清彦
    • Organizer
      学術講演会
    • Place of Presentation
      京都(京都大)
    • Year and Date
      2014-04-16
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 蛍光分子の溶媒接触表面積に基づくblinking2014

    • Author(s)
      川井清彦、古下嵩、丸山厚、真嶋哲朗
    • Organizer
      日本化学会第94回春季年会
    • Place of Presentation
      名古屋(名古屋大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA内ホール移動における電荷非局在化2013

    • Author(s)
      川井清彦、小阪田泰子、真嶋哲朗
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学(滋賀県)
    • Year and Date
      2013-03-24
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA内π空間を介したホール移動の高速化2013

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      高次π空間の創発と機能開発第9回公開シンポジウム
    • Place of Presentation
      シーサイドホテル舞子ビラ神戸(兵庫県)
    • Year and Date
      2013-03-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] Blinking観測によるDNA 1塩基違いの検出2013

    • Author(s)
      川井清彦、真嶋哲朗、丸山厚
    • Organizer
      光化学討論会2013
    • Place of Presentation
      松山(愛媛大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Detection of Single-Nucleotide Variations by Monitoring the Blinking Triggered by Charge Separation in DNA2013

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima, Atsushi Maruyama
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      横浜(神奈川大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分子の輝きから情報を読む2013

    • Author(s)
      川井清彦
    • Organizer
      東京工業大学生命理工学部セミナー
    • Place of Presentation
      横浜(東京工業大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Single molecule level DNA analysis based on charge transfer measurement2012

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC2012)
    • Place of Presentation
      東京工業大学(東京都)
    • Year and Date
      2012-11-28
    • Related Report
      2012 Annual Research Report
  • [Presentation] Hole-transfer dynamics determined by DNA flexibility2012

    • Author(s)
      Kiyohiko Kawai, Mitsuo Hayashi, Tetsuro Majima
    • Organizer
      第39回国際核酸化学シンポジウム
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2012-11-16
    • Related Report
      2012 Annual Research Report
  • [Presentation] Dynamics of Hole Transfer through DNA across Guanine-Cytosine Repe2012

    • Author(s)
      Yasuko Osakada, Kiyohiko Kawai, and Tetsuro Majima
    • Organizer
      高次π空間の創発と機能開発第4回国際シンポジウム
    • Place of Presentation
      浜名湖ロイヤルホテル(静岡県)
    • Year and Date
      2012-11-13
    • Related Report
      2012 Annual Research Report
  • [Presentation] Hole Transfer through DNA : Mechanism and Single-Molecule Level Analysis2012

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      Japan-India Bilateral Seminar on Supramolecular Nanomaterials for Energy Innovaiton
    • Place of Presentation
      アルファあなぶきホール(香川県)
    • Year and Date
      2012-10-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNAの柔軟性がホール移動速度に与える影響2012

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      光化学討論会2012
    • Place of Presentation
      東京工業大学(東京都)
    • Year and Date
      2012-09-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA内ホール移動速度の核酸塩基HOMOレベル依存性2012

    • Author(s)
      川井清彦、林光雄、真嶋哲朗
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学(北海道)
    • Year and Date
      2012-09-06
    • Related Report
      2012 Annual Research Report
  • [Presentation] Charge Transfer through DNA : Toward Single-Molecule Level DNA Analysis2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      Molecular Biology and Biochemistry, Simon Fraser University, Seminar
    • Place of Presentation
      Vancouver (Canada)(招待講演)
    • Year and Date
      2012-08-10
    • Related Report
      2012 Annual Research Report
  • [Presentation] CHARGE TRANSFER DYNAMICS IN DNA AT THE SINGLE MOLECULE LEVEL2012

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      XX International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Montreal (Canada)
    • Year and Date
      2012-08-06
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNAの柔軟化によるDNA内ホール移動の高速化2012

    • Author(s)
      川井清彦、林光雄、真嶋哲朗
    • Organizer
      高次π空間の創発と機能開発第8回公開シンポジウム
    • Place of Presentation
      ホテルアローレ(石川県)
    • Year and Date
      2012-07-19
    • Related Report
      2012 Annual Research Report
  • [Book] “遺伝子の蛍光ラベル化、蛍光標識” “光と生命の事典”2016

    • Author(s)
      真嶋 哲朗
    • Total Pages
      2
    • Publisher
      朝倉書店
    • Related Report
      2015 Annual Research Report
  • [Book] Springer-Verlag2015

    • Author(s)
      K. Kawai, T. Majima
    • Total Pages
      18
    • Publisher
      “Photoinduced charge-separation in DNA” in “Topics in Current Chemistry: Photoinduced phenonmena in nucleic acids II”
    • Related Report
      2015 Annual Research Report
  • [Book] “Increasing the hole transfer rate through DNA by chemical modification” in “Topics in Current Chemistry: Chemical science of pi-electron systems”2015

    • Author(s)
      K. Kawai, T. Majima
    • Total Pages
      10
    • Publisher
      Springer-Japan
    • Related Report
      2015 Annual Research Report
  • [Book] 高次π空間の創発と機能開発2013

    • Author(s)
      川井清彦
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.sanken.osaka-u.ac.jp/labs/mec/kawairesearch.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 川井 清彦「研究紹介」

    • URL

      http://www.sanken.osaka-u.ac.jp/labs/mec/kawairesearch.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

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