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Novel Expansion of Bioanalysis Based on the Fluorescence Quench-Release Principle

Research Project

Project/Area Number 24360336
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionTokyo Institute of Technology

Principal Investigator

UEDA Hiroshi  東京工業大学, 資源化学研究所, 教授 (60232758)

Co-Investigator(Kenkyū-buntansha) DONG Jinhua  東京工業大学, 資源化学研究所, 助教 (80527838)
Co-Investigator(Renkei-kenkyūsha) MATSUYAMA Yuki (OHMURO Yuki)  神戸大学, 大学院工学研究科, 特命助教 (30571088)
Research Collaborator ABE Ryoji  ウシオ電機, 研究員
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2014: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2013: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2012: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Keywordsantibody / fluorescence quenching / immunoassay / cell-free translation / biochip / protein engineering / chemical biology / bioimaging / バイオテクノロジー / バイオセンサー / イメージング / 抗体工学 / 細胞分化 / 免疫測定 / 蛍光エネルギー移動 / 蛍光消光 / バイオイメージング / バイオチップ / 臨床診断
Outline of Final Research Achievements

We aimed at the elucidation of basic principle of Quenchbody (Q-body) and its application to various fields. Q-body is a site-specifically fluorescence-labeled recombinant antibody fragment, which was recently discovered by ourselves. It can detect various antigens with high sensitivity and rapidity in situ.
We succeeded in synthesizing Fab-type Q-bodies not only using cell-free translation system but also using cell-based system, and found novel suitable fluorescent dyes and novel modification sites on antibody. We also found a way to make genetically encoded Q-bodies using GFP variants, succeeded in a bead-based assay and imaging of osteocalcin peptide secreted from the cells, and in creating a similar biosensor protein based on the other ligand binders called Q'-body.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (36 results)

All 2015 2014 2013 2012 Other

All Journal Article (18 results) (of which Peer Reviewed: 16 results,  Acknowledgement Compliant: 6 results,  Open Access: 4 results) Presentation (12 results) (of which Invited: 5 results) Book (2 results) Remarks (3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Optimal fusion of antibody binding domains resulted in higher affinity and wider specificity2015

    • Author(s)
      J. Dong*, T. Kojima*, H. Ohashi and H. Ueda *equal contributions
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 印刷中 Issue: 5 Pages: 504-509

    • DOI

      10.1016/j.jbiosc.2015.03.014

    • NAID

      110010017114

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A signal-on fluorosensor based on quench-release principle for sensitive detection of antibiotic rapamycin2015

    • Author(s)
      H.J. Jeong, S. Itayama and H. Ueda
    • Journal Title

      Biosensors

      Volume: 5 Issue: 2 Pages: 131-140

    • DOI

      10.3390/bios5020131

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Open flower fluoroimmunoassay: a general method to make fluorescent protein-based immunosensor probes2015

    • Author(s)
      C.I. Chung, R. Makino, J. Dong and H. Ueda
    • Journal Title

      Anal. Chem.

      Volume: 87 Issue: 6 Pages: 3513-3519

    • DOI

      10.1021/acs.analchem.5b00088

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Optimization of a Fusion Protein Expression System using Human Cell Lines to Create a Practical Immunoassay Reagent2015

    • Author(s)
      K. Hayashi, Y. Tomozoe, K. Nagai, K. Matsuba, M. Mitsumori, Y. Hiraishi, T. Matsumura, H. Ueda and N. Kamiya
    • Journal Title

      KAGAKU KOGAKU RONBUNSHU

      Volume: 41 Issue: 1 Pages: 38-42

    • DOI

      10.1252/kakoronbunshu.41.38

    • NAID

      130004855805

    • ISSN
      0386-216X, 1349-9203
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Simultaneous retention of thermostability and specific activity in chimeric human alkaline phosphatases2015

    • Author(s)
      Y. Sasajima, Y. Kohama, M. Kojima-Misaizu, N. Kurokawa, Y. Hara, J. Dong, M. Ihara and H. Ueda
    • Journal Title

      Mol. Biotechnol.

      Volume: 56 Issue: 10 Pages: 953-961

    • DOI

      10.1007/s12033-014-9774-9

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] From Fluorescence Polarization to Quenchbody : Recent Progress in Fluorescent Reagentless Biosensors Based on Antibody and Other Binding Proteins2015

    • Author(s)
      H. Ueda and J.H. Dong
    • Journal Title

      Biochim. Biophys. Acta - Proteins and Proteomics

      Volume: 1844 Issue: 11 Pages: 1951-1959

    • DOI

      10.1016/j.bbapap.2014.06.005

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Strategy for making a superior Quenchbody to proteins: effect of the fluorophore position2014

    • Author(s)
      H.J. Jeong and H. Ueda
    • Journal Title

      Sensors (Basel)

      Volume: 14 Issue: 7 Pages: 13285-13297

    • DOI

      10.3390/s140713285

    • NAID

      120006582344

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 免疫反応を測れる 光る抗体2014

    • Author(s)
      上田 宏
    • Journal Title

      現代化学

      Volume: 518 Pages: 32-36

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Ultra Q-bodies : quench-based antibody probes that utilize dye-dye interactions with enhanced antigen-dependent fluorescence2014

    • Author(s)
      R. Abe, H.J. Jeong, D. Arakawa, J.H. Dong, H. Ohashi, R. Kaigome, F. Saiki, K. Yamane, H. Takagi and H.Ueda
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 4640-4640

    • DOI

      10.1038/srep04640

    • NAID

      120006582319

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improved protein-protein interaction assay FlimPIA by the entrapment of luciferase conformation2014

    • Author(s)
      Yuki Ohmuro-Matsuyama, Yuko Hara, and Hiroshi Ueda
    • Journal Title

      Analytical Chemistry

      Volume: (印刷中) Issue: 4 Pages: 2013-2018

    • DOI

      10.1021/ac403065v

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protein-based Open Sandwich Immuno-PCR for Sensitive Detection of Small Biomarkers2013

    • Author(s)
      S. Hasan, J. Dong, Y. Hara, Y. Morizane, F. Shibasaki and H. Ueda
    • Journal Title

      Analytical Sciences

      Volume: 29 Issue: 9 Pages: 871-876

    • DOI

      10.2116/analsci.29.871

    • NAID

      10031196097

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A protein-protein interaction assay based on the functional complementa tion of mutant firefly luciferase.2013

    • Author(s)
      Yuki Ohmuro-Matsuyama, Kota Nakano, Aoi Kimura, Keiichi Ayabe and Hiroshi Ueda
    • Journal Title

      Analytieal Chemistry

      Volume: 85 Issue: 16 Pages: 7935-7940

    • DOI

      10.1021/ac4016825

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Open-sandwich immunoassay for sensitive and broad-range detection of a shellfish toxin gonyautoxin2013

    • Author(s)
      Y. Hara, J.H. Dong, and H. Ueda
    • Journal Title

      Anal. Chim. Acta.

      Volume: 793 Pages: 107-113

    • DOI

      10.1016/j.aca.2013.07.024

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 新規蛍光免疫測定素子(Q-body)による各種分子の迅速・簡便な検出法2013

    • Author(s)
      阿部 亮二,大橋 広行,上田 宏
    • Journal Title

      実験医学

      Volume: 31 Pages: 2153-2157

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Detection of vimentin serine phosphorylation by multicolor Quenchbodies2013

    • Author(s)
      Jeong, H.J.
    • Journal Title

      Biosensors and Bioelectronics

      Volume: 40 Issue: 1 Pages: 17-23

    • DOI

      10.1016/j.bios.2012.06.030

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Demonstration of protein-fragment complementation assay using purified firefly luciferase fragments2013

    • Author(s)
      Ohmuro-Matsuyama, Y.
    • Journal Title

      BMC Biotechnology

      Volume: 13 Issue: 1 Pages: 31-31

    • DOI

      10.1186/1472-6750-13-31

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Open-sandwich molecular imprinting: making a recognition matrix with antigen-imprinted antibody fragments2012

    • Author(s)
      Minami, K.
    • Journal Title

      Bioconjugate Chemistry

      Volume: 23 Issue: 7 Pages: 1463-1469

    • DOI

      10.1021/bc3000782

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of an Electric Charge-Tunable Micro-column for Capillary Liquid Chromatography2012

    • Author(s)
      Liu, X.
    • Journal Title

      Analytical Sciences

      Volume: 28 Issue: 9 Pages: 853-859

    • DOI

      10.2116/analsci.28.853

    • NAID

      130004442134

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] アミノ基転移反応を利用したQuenchbodyの調製2015

    • Author(s)
      董 金華, 鄭 煕陳, 上田 宏
    • Organizer
      化学工学会第80年会
    • Place of Presentation
      芝浦工業大学
    • Year and Date
      2015-03-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] がん関連膜タンパク質クローディン高感度検出のための蛍光抗体プローブの開発2015

    • Author(s)
      河村 拓哉, 飯田 愛未, 川東 祐美, 滝川 睦美, 鍾 蝉伊, 鄭 熙陳, 董 金華, 近藤 昌夫, 上田 宏
    • Organizer
      化学工学会第80年会
    • Place of Presentation
      芝浦工業大学
    • Year and Date
      2015-03-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] Functional Complementation of Luciferase Half-Reactions: Application to a Robust Protein-Protein Interaction Assay FlimPIA2014

    • Author(s)
      Hiroshi Ueda, Takahiro Yamashita, and Yuki Ohmuro-Matsuyama
    • Organizer
      Active Enzyme Molecules 2014
    • Place of Presentation
      富山国際会議場
    • Year and Date
      2014-12-17 – 2014-12-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] How can we transform uni-functional proteins to sensors?2014

    • Author(s)
      H. Ueda
    • Organizer
      20th YABEC symposium
    • Place of Presentation
      National Chung Cheng University, Taiwan
    • Year and Date
      2014-11-06 – 2014-11-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 生物発光・蛍光消光を利用した新規計測技術の開発2014

    • Author(s)
      上田 宏
    • Organizer
      生物発光化学発光研究会第31回学術講演会
    • Place of Presentation
      信州大学繊維学部
    • Year and Date
      2014-11-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 抗原結合により光る蛍光標識抗体Quenchbody (Q-body)の開発2012

    • Author(s)
      上田 宏, 阿部亮二, 高木広明, 芳坂貴弘
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] 新規蛍光免疫素子Quenchbodyによる各種バイオマーカーの迅速高感度検出2012

    • Author(s)
      上田 宏, 阿部亮二, 大橋広行, 高木広明, 芳坂貴弘
    • Organizer
      日本プロテオーム学会2012年大会
    • Place of Presentation
      産総研.臨海副都心センター
    • Year and Date
      2012-07-27
    • Related Report
      2012 Annual Research Report
  • [Presentation] "Quenchbodies" : quench-based antibody probes that fluoresce upon antigen binding2012

    • Author(s)
      H. Ueda, R. Abe, H. Ohashi, H. Takagi, T. Hohsaka
    • Organizer
      Biosensors 2012
    • Place of Presentation
      Cancun, Mexico
    • Year and Date
      2012-05-16
    • Related Report
      2012 Annual Research Report
  • [Presentation] 理想のイムノアッセイを目指して~新規蛍光免疫素子Q-bodyの開発と応用

    • Author(s)
      上田 宏
    • Organizer
      第11回バイオ計測・試薬研究会
    • Place of Presentation
      京都市産業技術研究所
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 発光酵素の反応分割による迅速高感度な相互作用検出系の開発

    • Author(s)
      上田 宏
    • Organizer
      日本生物工学会第65回大会
    • Place of Presentation
      広島国際会議場
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 抗原結合により光る蛍光標識抗体断片Quenchbody (Q-body)の開発

    • Author(s)
      上田 宏,阿部 亮二,ジョンヒジン,荒川 大,山根 亨介,高木 広明,芳坂 貴弘
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 大腸菌を用いた新規蛍光免疫センサーQuenchbodyの構築と細胞イメージングへの応用

    • Author(s)
      ジョンヒジン,荒川 大,董 金華,上田 宏
    • Organizer
      生物発光化学発光研究会第30回学術講演会
    • Place of Presentation
      東京工業大学蔵前会館
    • Related Report
      2013 Annual Research Report
  • [Book] 免疫測定法 基礎から先端まで2014

    • Author(s)
      生物化学的測定研究会,小林典裕,上田 宏,三宅司郎,荒川秀俊(編)
    • Total Pages
      335
    • Publisher
      講談社
    • Related Report
      2014 Annual Research Report
  • [Book] 実験医学増刊一人と医学のステージへ拡大する細胞周期2013中山敬一編2013

    • Author(s)
      上田 宏, ジョンヒジン
    • Publisher
      羊土社
    • Related Report
      2012 Annual Research Report
  • [Remarks] 東京工業大学 資源化学研究所 プロセスシステム工学部門 上田研究室

    • URL

      http://www.ueda.res.titech.ac.jp/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 研究業績

    • URL

      http://www.ueda.res.titech.ac.jp/pubs/pubs.html

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.ueda.res.titech.ac.jp/pubs/pubs.html

    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] 特許2013

    • Inventor(s)
      上田 宏, 大橋 広行, 阿部 亮二
    • Industrial Property Rights Holder
      東京大学,ウシオ電機
    • Filing Date
      2013-02-15
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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