• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Studies on diversification of membrane trafficking pathways in plants

Research Project

Project/Area Number 24370019
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionThe University of Tokyo

Principal Investigator

UEDA TAKASHI  東京大学, 理学(系)研究科(研究院), 准教授 (10311333)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2014: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2013: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2012: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords膜交通 / 進化 / RAB GTPase / SNARE / Rab GTPase / 多様化
Outline of Final Research Achievements

We analyzed the function of a plant-unique RAB5 GTPsae, ARA6, and found that ARA6 negatively regulated the vacuolar trafficking pathway counteracting conventional RAB5 GTPases. We also revealed that this counteracting function was fulfilled through the function of an effector protein of ARA6, PUF2. We also tried to reconstruct molecular evolution of a plant-specific membrane fusion machinery, VAMP727, and found that functional conversion of VAMP727 from the ancestral function of VAMP72 members was mediated by two-step events: acquisition of an insertion sequence in the N-terminal longin domain followed by acidification of the inserted region.
Furthermore, we systematically analyzed RAB GTPases and SNARE molecules in the liverwort, Marchantia polymorpha, to collect information on the membrane trafficking system in the basal land plant.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (46 results)

All 2015 2014 2013 2012

All Journal Article (34 results) (of which Peer Reviewed: 30 results,  Acknowledgement Compliant: 5 results,  Open Access: 4 results) Presentation (10 results) (of which Invited: 8 results) Book (2 results)

  • [Journal Article] The plant-specific RAB5 GTPase ARA6 is required for starch and sugar homeostasis in Arabidopsis thaliana2015

    • Author(s)
      Tsutsui, T., Nakano, A. and Ueda, T.
    • Journal Title

      Plant Cell Phys.

      Volume: in press Issue: 6 Pages: 1073-1083

    • DOI

      10.1093/pcp/pcv029

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Molecular analysis and localization of CaARA7 a conventional RAB5 GTPase homolog from characean algae2015

    • Author(s)
      Hoepflinger, M.C., Geretschlaeger, A., Sommer, A., Hoeftberger, M., Tenhaken, R., Ueda, T., and Foissner, I.
    • Journal Title

      Traffic

      Volume: in press Issue: 5 Pages: 534-554

    • DOI

      10.1111/tra.12267

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphoinositides have distinct roles in intracellular trafficking of the cellulose synthase complex in Arabidopsis thaliana2014

    • Author(s)
      Fujimoto, M., Suda, Y., Vernhettes, S., Nakano, A. and Ueda, T.
    • Journal Title

      Plant Cell Phys.

      Volume: 56 Issue: 2 Pages: 287-298

    • DOI

      10.1093/pcp/pcu195

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Plant vacuolar trafficking occurs through distinctly regulated pathways.2014

    • Author(s)
      Ebine K, Inoue T, Ito J, Ito E, Uemura T, Goh T, Abe H, Sato K, Nakano A, Ueda T.
    • Journal Title

      Curr Biol.

      Volume: 24 Issue: 12 Pages: 1375-1382

    • DOI

      10.1016/j.cub.2014.05.004

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plant vacuolar trafficking driven by RAB and SNARE proteins2014

    • Author(s)
      Uemura, T. and Ueda, T.
    • Journal Title

      Curr. Opin. Plant Biol.

      Volume: 22 Pages: 116-121

    • DOI

      10.1016/j.pbi.2014.10.002

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Cellulase in Cellulose Synthase: A Cat among the Pigeons?2014

    • Author(s)
      Ueda, T.
    • Journal Title

      Plant Phyiol.

      Volume: 165 Issue: 4 Pages: 1397-1398

    • DOI

      10.1104/pp.114.245753

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Analysis of Rab GTPase-effector interaction in endosomal trafficking by bimolecular fluorescence complementation2014

    • Author(s)
      Ito, E. and Ueda, T.
    • Journal Title

      Methods in Molecular Biology

      Volume: 1209 Pages: 97-105

    • DOI

      10.1007/978-1-4939-1420-3_7

    • ISBN
      9781493914197, 9781493914203
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Rab7 activation by the MON1-CCZ1 complex is essential for PVC-to-vacuole trafficking and plant growth in Arabidopsis2014

    • Author(s)
      Cui, Y., Zhao, Q., Gao, C., DingY., Zeng, Y., Ueda, T., Nakano, A., and Jiang, L.
    • Journal Title

      Plant Cell

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vesicular trafficking in characean green algae and the possible involvement of a VAMP72-family protein2014

    • Author(s)
      Hoepflinger, M., Hametner, C., Ueda, T. and Foissner I.
    • Journal Title

      Plant Signaling & Behavior

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sex-specific post-translational regulation of the gamete fusogen GCSI in the isogamous volvocine alga Gonium pectorale.2014

    • Author(s)
      Kawai-Toyooka H, Mori T, Hamaji T, Suzuki M, Olson BJ, Uemura T, Ueda T, Nakano A, Toyoda A, Fujiyama A, Nozaki H
    • Journal Title

      EUkaryotic Cell

      Volume: (in press) Issue: 5 Pages: 648-656

    • DOI

      10.1128/ec.00330-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interactomics of Qa-SNARE in Arabidopsis thaliana2014

    • Author(s)
      Fujiwara, M., Uemura, T., Ebine, K., Nishimori, Y., Ueda, T., Nakano, A., Sato, MH. and Fukao, Y.
    • Journal Title

      Plant Cell Phys.

      Volume: 55 Issue: 4 Pages: 781-789

    • DOI

      10.1093/pcp/pcu038

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A unique HEAT repeat-containing protein SHOOT GRAVITROPISM 6 is involved in vacuolar membrane dynamics in gravity sensing cells of Arabidopsis inflorescence stem2014

    • Author(s)
      Hashiguchi, Y., Yano, D., Nagafusa, K., Kato, T., Saito, C., Uemura, T., Ueda, T., Nakano, A., Tasaka, M. and Morita, MT
    • Journal Title

      Plant Cell Phys.

      Volume: 55 Issue: 4 Pages: 811-822

    • DOI

      10.1093/pcp/pcu020

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic behavior of the trans-Golgi network in root tissues of Arabidopsis revealed by super-resolution live imaging2014

    • Author(s)
      T. Uemura, Y. Suda, T. Ueda, and A. Nakano
    • Journal Title

      Plant Cell Physiol

      Volume: 55 Issue: 4 Pages: 694-670

    • DOI

      10.1093/pcp/pcu010

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Membrane Trafficking Pathways and their Roles in Plant-Microbe Interactions2014

    • Author(s)
      Inada, N. and Ueda, T.
    • Journal Title

      Plant Cell Phys.

      Volume: 55 Issue: 4 Pages: 672-686

    • DOI

      10.1093/pcp/pcu046

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of Rab GTPase-effector interaction in endosomal trafficking by bimolecular flurescence complementation2014

    • Author(s)
      Ito, E. and Ueda, T.
    • Journal Title

      Methods in Molecular Biology

      Volume: 未定

    • Related Report
      2013 Annual Research Report
  • [Journal Article] 膜交通経路の多様性獲得機構から見た植物のポストゴルジ輸送網2014

    • Author(s)
      藤本優,上田貴志
    • Journal Title

      植物科学の最前線(BSJ-Review)

      Volume: 未定

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Molecular and biochemical analysis of the first ARA6 homolog, a Rab5 GTPase, from green algae2013

    • Author(s)
      Hoepflinger, M., Geretschlaeger, A., Hoeftberger, M., Sommer, A., Nishiyama, T., Sakayama, Hammerl, P., H., Tenhaken, R., Ueda, T., Foissner I.
    • Journal Title

      J. Exp. Bot.

      Volume: 64 Issue: 18 Pages: 5553-68

    • DOI

      10.1093/jxb/ert322

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular mechanism of strigolactone perception by DWARF142013

    • Author(s)
      Hidemitsu Nakamura, Yau-Lin Xue, Takuya Miyakawa, Feng Hou, Hui-Min Qin, Kosuke Fukui, Xuan Shi, Emi Ito, Shinsaku Ito, Seung-Hyun Park, Yumiko Miyauchi, Atsuko Asano, Naoya Totsuka, Takashi Ueda, Masaru Tanakura & Tadao Asami
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 2613-2613

    • DOI

      10.1038/ncomms3613

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RAB5 activation is required for multiple steps in Arabidopsis thaliana root development2013

    • Author(s)
      Takeshi Inoue, Yuki Kondo, Satoshi Naramoto, Akihiko Nakano and Takashi Ueda
    • Journal Title

      Plant Cell Physiol.

      Volume: 54 Issue: 10 Pages: 1648-1659

    • DOI

      10.1093/pcp/pct109

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] New insights into the role of Arabidopsis RABA1 GTPases in salinity stress tolerance.2013

    • Author(s)
      Asaoka Rin, Uemura Tomohiro, Nishida Sho, Fujiwara Toru, Ueda Takashi, Nakano Akihiko
    • Journal Title

      Plant Signal and Behavior

      Volume: 8 Issue: 9 Pages: e25377-e25377

    • DOI

      10.4161/psb.25377

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ARA7 (Q69L) expression in transgenic Arabidopsis cells induces the formation of enlarged multivesicular bodies2013

    • Author(s)
      Tianran Jia, Caiji Gao , Yong Cui, Junqi Wang, Yu Ding, Yi Cai, Takashi Ueda, Akihiko Nakano and Liwen Jiang
    • Journal Title

      J. Exp. Bot.

      Volume: 64 Issue: 10 Pages: 2817-2829

    • DOI

      10.1093/jxb/ert125

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm2013

    • Author(s)
      Fukuda, M., Wen, L., Satoh-Cruz, M., Kawagoe, Y., Nagamura, Y., Okita, TW., Washida, H., Sugino, A., Ishino, S., Ishino, Y., Ogawa, M., Sunada, M., Ueda, T., and Kumamaru, T.
    • Journal Title

      Plant Phys.

      Volume: 25 Pages: 663-674

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RABA Members Act in Distinct Steps of Subcellular Trafficking of the FLAGELLIN SENSING2 Receptor.2013

    • Author(s)
      Choi, et al.
    • Journal Title

      Plant Cell

      Volume: (in press) Issue: 3 Pages: 1174-1187

    • DOI

      10.1105/tpc.112.108803

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis RABA1 GTPases are involved in transport between the trans-Golgi network and the plasma membrane, and are required for salinity stress tolerance.2013

    • Author(s)
      Rin Asaoka, Tomohiro Uemura, Jun Ito, Masaru Fujimoto, Emi Ito, Takashi Ueda, Akihiko Nakano
    • Journal Title

      The Plant Journal

      Volume: 73 Issue: 2 Pages: 240-249

    • DOI

      10.1111/tpj.12023

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct metal recognition by guanine nucleotide exchange factor in the initial step of exchange reaction2013

    • Author(s)
      Tamami Uejima, Kentaro Ihara, Mariko Sunada, Masato Kawasaki, Takashi Ueda, Ryuichi Kato, Akihiko Nakano, and Soichi Wakatsuki
    • Journal Title

      Acta Cryst. D

      Volume: 69 Issue: 3 Pages: 345-351

    • DOI

      10.1107/s0907444912047294

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] crotubule stability affects the unique motility of F-actin in Marchantia polymorp2013

    • Author(s)
      Atsuko Era, Natsularo Kutsuna, Taktiai Higaki. Seiichjro Hasezava, Akihiko Nakano, Takashi Ieda
    • Journal Title

      Journal of Plant Research

      Volume: 126 Issue: 1 Pages: 113-119

    • DOI

      10.1007/s10265-012-0496-4

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Flowering time modulation by a vacuolar SNARE via FLOWERING LOCUS C in Arabidopsis thaliana.2012

    • Author(s)
      Ebine, et al.,
    • Journal Title

      PLoS One

      Volume: 7(7) Issue: 7 Pages: e42239-e42239

    • DOI

      10.1371/journal.pone.0042239

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The physiological role of SYP4 in the salinity and osmotic stress tolerances2012

    • Author(s)
      Tomohiro Uemura, Takashi Ueda, and Akihiko Nakano
    • Journal Title

      Plant Signal. Behav.

      Volume: 7 Issue: 9 Pages: 1118-1120

    • DOI

      10.4161/psb.21307

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] cis-Golgi proteins accumulate near the ER exit sites and act as the scaffold for Golgi regeneration after brefeldin A treatment in tobacco BY-2 cells.2012

    • Author(s)
      Ito Y, Uemura T, Shoda K, Fujimoto M. Ueda T, Nakano A
    • Journal Title

      Mol. Biol. Cell.

      Volume: 23 Issue: 16 Pages: 3203-3214

    • DOI

      10.1091/mbc.e12-01-0034

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Arabidopsis ARF-GTP exchange factor, GNOM, mediates transport required for innate immunity and focal accumulation of PEN12012

    • Author(s)
      Mads Eggert Nielsen, Angela Feechan, Henrik Böhlenius, Takashi Ueda, and *Hans Thordal-Christensen
    • Journal Title

      Proc. Natl. Acad. Sci. U. S. A.

      Volume: 109 Issue: 28 Pages: 11443-11448

    • DOI

      10.1073/pnas.1117596109

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Statistical organelle dissection of Arabidopsis guard cells using image database LIPS.2012

    • Author(s)
      Higaki, et al.
    • Journal Title

      Sci Rep.

      Volume: 2 Issue: 1 Pages: 405-405

    • DOI

      10.1038/srep00405

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conserved and plant-unique mechanisms regulating plant post-Golgi traffic2012

    • Author(s)
      Masaru Fujimoto and Takashi Ueda
    • Journal Title

      Front. Plant Sci.

      Volume: 3 Pages: 197-197

    • DOI

      10.3389/fpls.2012.00197

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ゼニゴケ細胞生物学2012

    • Author(s)
      恵良厚子、上田貴志
    • Journal Title

      BSJ-Review

      Volume: 3 Pages: 114-121

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 細胞壁資材の細胞内輸送・植物の膜交通と細胞壁2012

    • Author(s)
      藤本優, 上田貴志
    • Journal Title

      遺伝

      Volume: 66 Pages: 47-52

    • Related Report
      2012 Annual Research Report
  • [Presentation] Diversification of membrane trafficking pathways during land plant evolution2015

    • Author(s)
      Takashi Ueda
    • Organizer
      Front Lines of Plant Cell Wall Research
    • Place of Presentation
      Nara, Japa
    • Year and Date
      2015-03-20 – 2015-03-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Conserved and unique aspects of membrane trafficking in Marchantia polymorpha2014

    • Author(s)
      Takashi Ueda
    • Organizer
      Marchantia workshop 2014
    • Place of Presentation
      Kobe, Japa
    • Year and Date
      2014-12-08 – 2014-12-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Diversification of membrane trafficking pathways ~lessons from plants~2014

    • Author(s)
      Takashi Ueda
    • Organizer
      The first International Conference on Organelle Biogenesis and Function in Hong Kong
    • Place of Presentation
      Chinese University of Hong Kong, Hong Kong
    • Year and Date
      2014-12-04 – 2014-12-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 植物に学ぶ膜交通の多様化と進化2014

    • Author(s)
      上田貴志
    • Organizer
      感染研学友会シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2014-11-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Diversification of membrane trafficking pathways ~lessons from plants~2014

    • Author(s)
      Takashi Ueda
    • Organizer
      The 38th NAITO Conference on Molecule-based biological systems
    • Place of Presentation
      Sapporo, Japa
    • Year and Date
      2014-10-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Expected and unexpected roles of membrane traffic in stress response2014

    • Author(s)
      Takashi Ueda
    • Organizer
      Gordon Research Conference on Salt & Water Stress in Plants
    • Place of Presentation
      Newry, USA
    • Year and Date
      2014-08-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 比べて分かる~植物に学ぶ膜交通の保存性と多様性~2014

    • Author(s)
      上田貴志
    • Organizer
      第66回日本細胞生物学会大会
    • Place of Presentation
      奈良
    • Year and Date
      2014-06-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Mechanism and function of plant-unique membrane trafficking pathways2013

    • Author(s)
      Takashi Ueda
    • Organizer
      IWPMB 2013 (invited speaker)
    • Place of Presentation
      Kurashiki Geibunkan(Kurashiki)
    • Year and Date
      2013-03-27
    • Related Report
      2012 Annual Research Report
  • [Presentation] Diversification of membrane trafficking pathways ~lessons from plants~2013

    • Author(s)
      Takashi Ueda
    • Organizer
      UK-Japan joint meeting on Plant Cell Biology
    • Place of Presentation
      Cambridge, UK
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 植物におけるポストゴルジ輸送経路の多様化と進化2012

    • Author(s)
      上田貴志
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大(姫路)(招待講演)
    • Year and Date
      2012-09-16
    • Related Report
      2012 Annual Research Report
  • [Book] 植物細胞壁2013

    • Author(s)
      上田貴志
    • Total Pages
      349
    • Publisher
      講談社(分担執筆)
    • Related Report
      2012 Annual Research Report
  • [Book] Endocytosis in plants2012

    • Author(s)
      Ueda, et al.
    • Total Pages
      336
    • Publisher
      Springer(分担執筆)
    • Related Report
      2012 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi