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Structural analysis to investigate the coordinating role of DNA clamp in replisome

Research Project

Project/Area Number 24370046
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKyushu University

Principal Investigator

Mayanagi Kouta  九州大学, 生体防御医学研究所, 助教 (50418571)

Co-Investigator(Kenkyū-buntansha) SHIRAI Tsuyoshi  長浜バイオ大学, 教授 (00262890)
OYAMA Takuji  山梨大学, 准教授 (60423133)
Co-Investigator(Renkei-kenkyūsha) ISHINO Yoshizumi  九州大学, (連合)農学研究科, 教授 (30346837)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2014: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2013: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2012: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywords電子顕微鏡 / ナノバイオ / 生体分子 / 可視化 / 生物物理 / 画像解析 / 複合体 / 立体構造 / 単粒子解析 / DNA複製 / クランプ
Outline of Final Research Achievements

PCNA has a trimeric ring structure that encircles the DNA, and increases the processivity of the bound DNA polymerase by tethering it to the DNA. It is known now, that PCNA also interacts with multiple partners, such as DNA ligase and FEN, to control DNA replication, and works not only as the platform, but also as the conductor for the recruitment and release of these factors. However, the molecular architectures as well as the mechanism of the regulation of these replication factors are not known in detail. In order to investigate the switching mechanism between the replication factors in more detail, we studied the complex structures with two replication factors bound to one PCNA ring, by single particle analysis. We could successfully visualize the 3D structure of FEN-DNA ligase-PCNA-DNA complex, the intermediate state of Okazaki fragment maturation, and the handing over of the ds DNA strand from FEN to DNA ligase.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (84 results)

All 2016 2015 2014 2013 2012

All Journal Article (31 results) (of which Peer Reviewed: 29 results,  Open Access: 6 results,  Acknowledgement Compliant: 3 results) Presentation (48 results) (of which Int'l Joint Research: 1 results,  Invited: 7 results) Book (4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea.2016

    • Author(s)
      Ishino S, Nishi Y, Oda S, Uemori T, Sagara T, Takatsu N, Yamagami T, Shirai T, Ishino Y.
    • Journal Title

      Nucleic Acids Res.

      Volume: 124 Issue: 7 Pages: 2977-2086

    • DOI

      10.1093/nar/gkw153

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Novel AVPR2 mutation causing partial nephrogenic diabetes insipidus in a Japanese family2016

    • Author(s)
      Yamashita S, Hata A, Usui T, Oda H, Hijikata A, Shirai T, Kaneko N, Hata D
    • Journal Title

      J. Pediatr. Endocrinol. Metab.

      Volume: 5 Issue: 5 Pages: 591-596

    • DOI

      10.1515/jpem-2015-0323

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deciphering Supramolecular Structures with Protein-Protein Interaction Network Modeling2015

    • Author(s)
      Toshiyuki Tsuji, Takao Yoda, and Tsuyoshi Shirai
    • Journal Title

      Sci. Rep.

      Volume: 5 Issue: 1 Pages: 16341-16341

    • DOI

      10.1038/srep16341

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The influence of PRNP polymorphisms on human prion disease susceptibility: an update2015

    • Author(s)
      Kobayashi A, Teruya K, Matsuura Y, Shirai T, Nakamura Y, Yamada M, Mizusawa H, Mohri S, Kitamoto T.
    • Journal Title

      Acta Neuropathologica

      Volume: 130 Issue: 2 Pages: 159-170

    • DOI

      10.1007/s00401-015-1447-7

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 超分子モデリングによる創薬支援2015

    • Author(s)
      土方敦司、辻  敏之、白井 剛
    • Journal Title

      SAR News

      Volume: 28 Pages: 1-7

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Integrated molecular mechanism directing nucleosome reorganization by human FACT2015

    • Author(s)
      Tsunaka Y, Fujiwara Y, Oyama T, Hirose S, Morikawa K
    • Journal Title

      Genes Dev

      Volume: 30(6) Issue: 6 Pages: 673-686

    • DOI

      10.1101/gad.274183.115

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Peroxisome proliferator-activated receptor gamma (PPARgamma) has multiple binding points that accommodate ligands in various conformations: Structurally similar PPARgamma partial agonists bind to PPARgamma LBD in different conformations2015

    • Author(s)
      Ohashi M, Gamo K, Oyama T, Miyachi H
    • Journal Title

      Bioorg Med Chem Lett

      Volume: 25 Issue: 14 Pages: 2758-2762

    • DOI

      10.1016/j.bmcl.2015.05.025

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Different structures of the two peroxisome proliferator-activated receptor gamma (PPARγ) ligand-binding domains in homodimeric complex with partial agonist, but not full agonist2015

    • Author(s)
      M. Ohashi, T. Oyama, H. Miyachi
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: - Issue: 13 Pages: 2639-2644

    • DOI

      10.1016/j.bmcl.2015.04.076

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural design and synthesis of arylalkynyl amide-type peroxisome proliferator-activated receptor γ (PPARγ)-selective antagonists based on the helix12-folding inhibition hypothesis.2015

    • Author(s)
      M. Ohashi, K. Gamo, Y. Tanaka, M. Waki, Y. Beniyama, K. Matsuno, J. Wada, M. Tenta, J. Eguchi, M. Makishima, N. Matsuura, T. Oyama, H. Miyachi.
    • Journal Title

      European Journal of Medicinal Chemistry

      Volume: 90 Pages: 53-67

    • DOI

      10.1016/j.ejmech.2014.11.017

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Revealing the intracellular ultrastructure of filopodia with cryo-electron tomography.2014

    • Author(s)
      Shinji Aramaki, Kouta Mayanagi, Kazuhiro Aoyama and Takuo Yasunaga
    • Journal Title

      Microscopy (Oxf) Suppl.

      Volume: 63 Issue: suppl 1 Pages: 133-134

    • DOI

      10.1093/jmicro/dfu071

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 単粒子解析法で迫るDNA 複製フォーク複合体の機能構造連関2014

    • Author(s)
      真柳浩太
    • Journal Title

      顕微鏡

      Volume: 49 Pages: 110-117

    • NAID

      130007701713

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clustering of 3D-Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities2014

    • Author(s)
      Ohtana Y,Abdullah AA, Amin MA,Huang M,Ono N, Sato T,Sugiura T,Horai H,Nakamura Y,Morita AH, Lange KW,Kibinge NK, Katsuragi T,Shirai T,Kanaya S
    • Journal Title

      Mol. Inf.

      Volume: 33 Issue: 11-12 Pages: 790-801

    • DOI

      10.1002/minf.201400123

    • NAID

      130005146305

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Aicardi-Goutières syndrome is caused by IFIH1 mutations.2014

    • Author(s)
      Oda, H., Nakagawa, K., Abe, J., Awaya, T., Funabiki, M., Hijikata, A., Nishikomori, R., Funatsuka, M., Ohshima, Y., Sugawara, Y., Yasumi, T., Kato, H., Shirai, T., Ohara, O., Fujita, T., Heike, T.
    • Journal Title

      America Journal of Human Genetics

      Volume: 95 Issue: 1 Pages: 121-125

    • DOI

      10.1016/j.ajhg.2014.06.007

    • NAID

      120005460706

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluating Prion Models Based on Comprehensive Mutation Data of Mouse PrP.2014

    • Author(s)
      Shirai T, Saito M, Kobayashi A, Asano M, Hizume M, Ikeda S, Teruya K, Morita M, Kitamoto T.
    • Journal Title

      Structure.

      Volume: 22 Issue: 4 Pages: 560-571

    • DOI

      10.1016/j.str.2013.12.019

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray diffraction analysis of domain chimeric L-(2S, 3S)-butanediol dehydrogenase2014

    • Author(s)
      Shimegi T, Oyama T, Ohtsuki T, Kurisu G, Kusunoki M, Ui S
    • Journal Title

      Acta Cryst F

      Volume: 70 Issue: 4 Pages: 461-463

    • DOI

      10.1107/s2053230x13032755

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Purification and characterization of a protease from Isaria cicadae2014

    • Author(s)
      Takekawa C, Nakamura K, Homma H, Oyama T
    • Journal Title

      Mushroom Science and Biotechnology

      Volume: 22 Pages: 74-78

    • NAID

      110009863113

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dynamics study-guided identification of cyclic amine structures as novel hydrophobic tail components of hPPARγ agonists2014

    • Author(s)
      Tanaka Y, Gamo K, Oyama T, Ohashi M, Waki M, Matsuo K, Matsuura N, Tokiwa H, Miyachi H
    • Journal Title

      Bioorg Med Chem

      Volume: 24 Issue: 16 Pages: 4001-4005

    • DOI

      10.1016/j.bmcl.2015.06.023

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the entire stalk region of the dynein motor domain2014

    • Author(s)
      Yosuke Nishikawa, Takuji Oyama, Narutoshi Kamiya, Takahide Kon, Yoko Y. Toyoshima, Haruki Nakamura, Genji Kurisu
    • Journal Title

      Journal of Molecular Biology

      Volume: 426 Issue: 19 Pages: 3232-3245

    • DOI

      10.1016/j.jmb.2014.06.023

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum2014

    • Author(s)
      Ogino H, Ishino S, Oyama T, Kohda D, Ishino Y
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 79 Issue: 3 Pages: 432-438

    • DOI

      10.1080/09168451.2014.982503

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modification of Chimeric (2S, 3S)-butanediol dehydrogenase based on structural information2014

    • Author(s)
      Shimegi T, Mochizuki K, Oyama T, Kusunoki M, Ui S
    • Journal Title

      Protein Pept Lett

      Volume: 22 Pages: 226-233

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The centromeric nucleosome-like CENP-T-W-S-X complex induces positive supercoils into DNA.2013

    • Author(s)
      Kozo Takeuchi, Tatsuya Nishino, Kouta Mayanagi, Naoki Horikoshi, Akihisa Osakabe, Hiroaki Tachiwana, Tetsuya Hori, Hitoshi Kurumizaka and Tatsuo Fukagawa.
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 3 Pages: 1644-1655

    • DOI

      10.1093/nar/gkt1124

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] データベース解析によるタンパク質リガンドの多様性2013

    • Author(s)
      白井 剛
    • Journal Title

      生化学

      Volume: 85 Pages: 671-687

    • NAID

      10031195378

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Structure of novel enzyme in mannan biodegradation process 4-O-beta-D-mannosyl-D-glucose phosphorylase MGP2013

    • Author(s)
      Setsu Nakae, Shigeaki Ito, Mariko Higa, Takeshi Senoura, Jun Wasaki, Atsushi Hijikata, Masafumi Shionyu, Susumu Ito, Tsuyoshi Shirai
    • Journal Title

      J. Mol. Biol.

      Volume: 425 Issue: 22 Pages: 4468-4478

    • DOI

      10.1016/j.jmb.2013.08.002

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] X-ray structure analysis and characterization of AFUEI, an elastase inhibitor from Aspergillus fumigatus2013

    • Author(s)
      Mayuko Sakuma, Katsumi Imada, Yoshiyuki Okumura, Kei-ichi Uchiya, Nobuo Yamashita, Kenji Ogawa, Atsushi Hijikata, Tsuyoshi Shirai, Michio Homma, Toshiaki Nikai
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Issue: 24 Pages: 17451-17459

    • DOI

      10.1074/jbc.m112.433987

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutational and Structural Analyses of Caldanaerobius polysaccharolyticus Man5B Reveal Novel Active Site Residues for Family 5 Glycoside Hydrolases2013

    • Author(s)
      Takuji Oyama, George E Schmitz, Dylan Dodd, Yejun Han, Alanna Burnett, Naoko Nagasawa, Roderick I Mackie, Haruki Nakamura, Kosuke Morikawa, & Isaac Cann
    • Journal Title

      PLoS ONE.

      Volume: 8 Issue: 11 Pages: e80448-e80448

    • DOI

      10.1371/journal.pone.0080448

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structures Of Copper-Depleted And Copper-Bound Fungal Pro-Tyrosinase: Insights Into Endogenous Cysteine-Dependent Copper Incorporation2013

    • Author(s)
      Shinobu Itoh, et al.
    • Journal Title

      J. Biol.Chem.

      Volume: 288 Issue: 30 Pages: 22128-22140

    • DOI

      10.1074/jbc.m113.477612

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and synthesis of a series of a-benzyl phenylpropanoic acid-type peroxisome proliferator-activated receptor (PPAR) gamma partial agonists with improved a queous solubility.2013

    • Author(s)
      Masao Ohashi, et.al.
    • Journal Title

      Bioorg. Med Chem.

      Volume: 21 Issue: 8 Pages: 2319-2332

    • DOI

      10.1016/j.bmc.2013.02.003

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Classification of Iigand molecules in PDB with fast heuristics graph match algorithm COMPLIG2012

    • Author(s)
      Saito M, Takemura N, Shirai T
    • Journal Title

      J. Mol. Biol.

      Volume: 424 Issue: 5 Pages: 379-390

    • DOI

      10.1016/j.jmb.2012.10.001

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Supramolecule Modeling: The Mechanism of Switching between Polymerization – Proof Reading Modes in DNA Duplication2012

    • Author(s)
      白井 剛
    • Journal Title

      Seibutsu Butsuri

      Volume: 52 Issue: 5 Pages: 246-249

    • DOI

      10.2142/biophys.52.246

    • NAID

      10030877059

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 祖先遺伝子推定による古代タンパク質の解析2012

    • Author(s)
      白井 剛
    • Journal Title

      生物工学

      Volume: 12 Pages: 11-14

    • NAID

      110009580295

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bidirectional fluorescence properties of pyrene-based peroxisome proliferator-activated receptor (PPAR) α/δ dual agonist.2012

    • Author(s)
      Shintaro Ban 他7名
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 20 Issue: 11 Pages: 3460-3464

    • DOI

      10.1016/j.bmc.2012.04.015

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 超好熱性アーキアThermococcus kodakarensis由来ファミリーD DNAホリメラーセの構造と機能の相関2015

    • Author(s)
      高島 夏希, 石野 園子,高藤 三加,真柳 浩太,原 智彦,山上 健,石野 良純
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会・合同大会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Single particle analysis of DNA replication fork complex2015

    • Author(s)
      Kouta Mayanagi
    • Organizer
      The 25th Hot Spring Harbor International Symposium
    • Place of Presentation
      Fukuoka, Japan
    • Year and Date
      2015-11-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA複製フォーク複合体の構築原理及び遷移•制御機構の解明2015

    • Author(s)
      真柳浩太
    • Organizer
      さきがけ-ライフサイエンスの革新を目指した構造生命科学と先端的基盤技術- 研究領域 研究成果報告会
    • Place of Presentation
      東京都文京区
    • Year and Date
      2015-11-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] Development of a protein-protein docking method based on matching of vector-presented amino acid residues2015

    • Author(s)
      Hijikata A, Shionyu M, Shirai T
    • Organizer
      生命医薬情報学連合大会2015年大会
    • Place of Presentation
      京都府宇治市
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] タンパク質超分子モデリングによる疾患関連変異の解析2015

    • Author(s)
      辻 敏之, 依田隆夫, 白井 剛
    • Organizer
      生命医薬情報学連合大会2015年大会
    • Place of Presentation
      京都府宇治市
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] Analyzing disease-related amino acid variants with protein supramolecule modeling2015

    • Author(s)
      辻 敏之, 依田隆夫, 白井 剛
    • Organizer
      生命医薬情報学連合大会2015年大会
    • Place of Presentation
      京都府宇治市
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] 擬似リン酸化によるMEK1の構造変化2015

    • Author(s)
      中江 摂, 白井 剛, 桐井康行, 多田俊治
    • Organizer
      平成27年度日本結晶学会年会
    • Place of Presentation
      大阪府堺市
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] A statistical amino acid pair potential to re-rank protein-protein docking poses predicted by a vector match algorithm2015

    • Author(s)
      Hijikata A, Shionyu M, Shirai T
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structure prediction and analyses of endonuclease NucS from Thermococcus kodakaraensis2015

    • Author(s)
      Nakae S, Hijikata A, Tsuji T, Yonezawa K, Kouyama K, Mayanagi K, Ishino S, Ishino Y, Shirai T
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Relationship between protein-protein interaction interface predicted by complex modeling and disease-related amino acid variants2015

    • Author(s)
      辻 敏之, 依田隆夫, 白井 剛
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] A method for scoring protein docking-poses on the basis of protein-protein interactions statistics2015

    • Author(s)
      Hijikata A, Shionyu M, Shirai T,
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] マルチドメインタンパク質の構造予測サーバの構築2015

    • Author(s)
      塩生真史, 土方敦司, 白井 剛
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Development of method for protein-protein interaction modeling using IntAct database2015

    • Author(s)
      辻 敏之, 依田隆夫, 白井 剛
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] タンパク質相互作用データベースを利用した超分子モデリング法の開発2015

    • Author(s)
      辻 敏之, 依田隆夫, 白井 剛
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Architecture and Regulation Mechanism of DNA Replication Fork Complex Revealed by Single Particle Analysis2015

    • Author(s)
      Mayanagi K
    • Organizer
      IGER International Symposium on Frontiers in Biological Research with Advanced Electron Microscope Technologies
    • Place of Presentation
      名古屋大学、名古屋
    • Year and Date
      2015-01-15 – 2015-01-16
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Revealing the intracellular ultrastructure of filopodia with cryo-electron tomography2014

    • Author(s)
      Aramaki S, Mayanagi K, Aoyama K, Yasunaga T
    • Organizer
      日本顕微鏡学会第58回シンポジウム
    • Place of Presentation
      九州大学、福岡
    • Year and Date
      2014-11-16 – 2014-11-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] 単粒子解析によるDNA複製フォーク複合体の機能構造連関の研究2014

    • Author(s)
      真柳浩太
    • Organizer
      京都大学放射線生物研究センターセミナー
    • Place of Presentation
      京都大学、京都
    • Year and Date
      2014-11-07
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 大豆イソフラボングルコシルトランスフェラーゼGmIF7GTの結晶構造解析2014

    • Author(s)
      桑名美貴子、楠木正巳、大山拓次、中山亨
    • Organizer
      平成26年度日本結晶学会年会
    • Place of Presentation
      東京大学、東京
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大豆イソフラボングルコシルトランスフェラーゼGmIF7GTの構造生物学2014

    • Author(s)
      桑名美貴子、楠木正巳、大山拓次、中山亨
    • Organizer
      第87回日本生化学会年会
    • Place of Presentation
      国立京都国際会館、京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Supramolecular modeling pipeline for correlative structural analysis and rational drug-design2014

    • Author(s)
      白井 剛
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター、札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] イントロダクション:3D遺伝学のすすめ2014

    • Author(s)
      白井 剛
    • Organizer
      第86回遺伝学会年会
    • Place of Presentation
      長浜バイオ大学、滋賀
    • Year and Date
      2014-09-17 – 2014-09-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] Single particle analysis of molecular architecture of DNA replication fork complex and switching mechanism of replication factors2014

    • Author(s)
      Mayanagi K, Kiyonari S, Nishida H, Ishino S, Fujikane R, Saito M, Kohda D, Ishino Y, Shirai T, Morikawa K, Mayanagi K, Kiyonari S, Nishida H, Ishino S, Saito M, Kohda D, Ishino Y, Shirai T, Morikawa
    • Organizer
      18th International Microscopy Congress
    • Place of Presentation
      Prague Czech, Republic
    • Year and Date
      2014-09-07 – 2014-09-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] 超分子モデリングパイプラインの構築による相関構造解析・理論創薬支援2014

    • Author(s)
      白井 剛
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜、横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 超分子モデリングパイプラインの構築2014

    • Author(s)
      白井 剛
    • Organizer
      創薬等支援技術基盤プラットフォームテクニカルセミナー2014
    • Place of Presentation
      名古屋大学、名古屋
    • Year and Date
      2014-06-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular architecture and switching mechanism of the replication fork complex2014

    • Author(s)
      Mayanagi K, Kiyonari S, Nishida H, Ishino S, Saito M, Kohda D, Ishino Y, Shirai T, Morikawa K
    • Organizer
      Gordon Research Conference,Three Dimensional Electron Microscopy
    • Place of Presentation
      Girona, Spain
    • Year and Date
      2014-06-22 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA複製フォーク複合体の分子構築及び切換え機構の研究2014

    • Author(s)
      真柳浩太
    • Organizer
      タンパク質研究所セミナー
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Molecular architecture and switching mechanism of DNA replication fork complex2013

    • Author(s)
      Kouta Mayanagi
    • Organizer
      Gordon Research Conference,Three Dimensional Electron Microscopy
    • Place of Presentation
      Colby-Sawyer College, NH, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Electron microscopic analysis of molecular architecture and switching mechanism of DNA replication fork complex2013

    • Author(s)
      Kouta Mayanagi, Shinichi Kiyonari, Hirokazu Nishida, Sonoko Ishino, Mihoko Saito, Daisuke Kohda, Yoshizumi Ishino, Tsuyoshi Shirai, Kosuke Morikawa
    • Organizer
      ICSG2013-SLS
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
  • [Presentation] Electron microscopic structure analysis of protein-DNA complexes2013

    • Author(s)
      Kouta Mayanagi
    • Organizer
      The 3rd International conference on New Frontier of the Research on RecA-family recombinases and their accessory proteins
    • Place of Presentation
      Nantes, France
    • Related Report
      2013 Annual Research Report
  • [Presentation] Activation mechanism of the replicative helicase in the thermophilic archaeon, Thermoplasma acidophilum2013

    • Author(s)
      Hiromi Ogino, Sonoko Ishino, Kouta Mayanagi, Takuji Oyama, Tsuyoshi Shirai, Kosuke Morikawa, Gyri Teien Haugland, Nils-Kare Birkeland, Daisuke Kohda, Yoshizumi Ishino
    • Organizer
      Thermophiles 2013
    • Place of Presentation
      Regensburg, Germany
    • Related Report
      2013 Annual Research Report
  • [Presentation] 組み替えhuman poly(ADP-ribose) polymerase 1の精製と予備的構造解析2013

    • Author(s)
      Kenichi Koyama, Kouta Mayanagi, Takayuki Eguchi, Hiroyuki Morita, Kazuo Kamemura, Yoshisuke Nishi, Masanao Miwa Tsuyoshi Shirai
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] 好熱性アーキアThermoplasma acidophilumにおける複製ヘリカーゼ活性化機構の分岐進化2013

    • Author(s)
      尾木野 弘実, 石野 園子, 真柳 浩太, 大山 拓次, 白井 剛, 森川 耿右, Haugland Gyri Teien, Birkeland Nils-Kare, 神田 大輔, 石野 良純
    • Organizer
      第14回極限環境生物学会
    • Place of Presentation
      川崎
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA 複製に関与する超分子複合体の単粒子解析2013

    • Author(s)
      真柳浩太
    • Organizer
      日本顕微鏡学会第57回シンポジウム
    • Place of Presentation
      名古屋
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Divergently evolved activation mechanism of the replicative helicase in the thermophilic archaeon, Thermoplasma acidophilum2013

    • Author(s)
      Hiromi Ogino, Sonoko Ishino, Kouta Mayanagi, Takuji Oyama, Tsuyoshi Shirai, Kosuke Morikawa, Gyri Teien Haugland, Nils-Kare Birkeland, Daisuke Kohda, Yoshizumi Ishino
    • Organizer
      第36回日本分子生物学会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] 組み替えhuman poly(ADP-ribose) polymerase 1の精製とその立体構造解析2013

    • Author(s)
      Kenichi Koyama, Takayuki Eguchi, Hiroyuki Morita, Kazuo Kamemura, Yoshisuke Nishi, Masanao Miwa Tsuyoshi Shirai
    • Organizer
      生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] 4-O-β-D-mannosyl-D-glucose phosphorylase (MGP) のX線結晶構造解析2013

    • Author(s)
      Setsu Nakae,Shigeaki Ito, Mariko Higa, Takeshi Senoura, Jun Wasaki, Atsushi Hijikata, Masafumi Shionyu, Susumu Ito, Tsuyoshi Shirai
    • Organizer
      生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Crystal structure of novel enzyme 4-O-β-D-mannosyl-D glucose phosphorylase with substrate and product molecules2013

    • Author(s)
      Setsu Nakae, Shigeaki Ito, Mariko Higa, Takeshi Senoura, Jun Wasaki, Atsushi, Hijikata, Masafumi Shionyu, Susumu Ito Tsuyoshi Shirai
    • Organizer
      AsCA'13
    • Place of Presentation
      香港
    • Related Report
      2013 Annual Research Report
  • [Presentation] ダイニンモータードメインのX線構造解析2013

    • Author(s)
      昆隆英、大山拓次、下-昆理恵子、須藤和夫、栗栖源嗣
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取
    • Related Report
      2013 Annual Research Report
  • [Presentation] 核内受容体PPARδリガンド結合ドメインとパーシャルアゴニストJK122の複合体結晶構造2013

    • Author(s)
      大山拓次、中村仁美、春日淳一、宮地弘幸、楠木正巳
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨
    • Related Report
      2013 Annual Research Report
  • [Presentation] 核内受容体PPARγリガンド結合ドメインとスルホン酸含有新規パーシャルアゴニストの複合体結晶構造2013

    • Author(s)
      大山拓次、大橋雅生、宮地弘幸、楠木正巳
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線菌Saccharopolyspora rectivirgula由来の耐熱性β-ガラクトシダーゼ酵素の結晶構造生物2012

    • Author(s)
      渡辺慎太郎、大山拓次、竹内耕平、中山亨、楠木正巳
    • Organizer
      第85回日本生化学会年会
    • Place of Presentation
      福岡国際会議場、マリンメッセ福岡
    • Year and Date
      2012-12-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structural basis for the activation of the nuclear receptor, PPARgamma, by fatty acid-and serotonin metabolites2012

    • Author(s)
      Tsuyoshi Waku, Takuma Shiraki, Takuji Oyama, Clara Shinyu, Kosuke Morikawa
    • Organizer
      第85回日本生化学会年会
    • Place of Presentation
      福岡国際会議場、マリンメッセ福岡
    • Year and Date
      2012-12-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] Thermoplasma acidophilum由来Cdc6/Orclとホモ4量体のGINSによるMCMとの相乗的な活性化2012

    • Author(s)
      尾木野弘実、石野園子、真柳浩太、大山拓次、白井剛、森川耿右、Gyri Teien Haugland、Nils-Kare Birkeland、石野良純
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場、マリンメッセ福岡
    • Year and Date
      2012-12-13
    • Related Report
      2012 Annual Research Report
  • [Presentation] モータータンパク質ダイニンに特徴的なストーク領域の構造研究2012

    • Author(s)
      西河洋祐、大山拓次、枝松正樹、豊嶋陽子、昆隆英、栗栖源嗣
    • Organizer
      平成24年度日本結晶学会年会
    • Place of Presentation
      東北大学片平キャンパス
    • Year and Date
      2012-10-25
    • Related Report
      2012 Annual Research Report
  • [Presentation] 放線菌Saccharopolyspora rectivirgula由来の耐熱性β-ガラクトシダーゼ野生型酵素の結晶構造解析2012

    • Author(s)
      渡辺慎太郎、大山拓次、竹内耕平、中山亨、楠木正巳
    • Organizer
      平成24年度日本結晶学会年会
    • Place of Presentation
      東北大学片平キャンパス
    • Year and Date
      2012-10-25
    • Related Report
      2012 Annual Research Report
  • [Presentation] 単粒子解析による複製関連複合体の制御機構の研究2012

    • Author(s)
      真柳浩太
    • Organizer
      遺伝学研究集会
    • Place of Presentation
      遺伝学研究所
    • Year and Date
      2012-10-03
    • Related Report
      2012 Annual Research Report
  • [Presentation] 新規セントロメア特異的ヒストン様複合体CENP-TWSXの構造機能解析2012

    • Author(s)
      西野達哉、竹内康造、Karen Gascoigne、鈴木應志、堀哲也、大山拓次、森川耿右、Iain Cheeseman、深川竜郎
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2012-06-21
    • Related Report
      2012 Annual Research Report
  • [Presentation] ダイニンモータードメインの2.8-Å結晶構造2012

    • Author(s)
      昆隆英、大山拓次、下一昆理恵子、須藤和夫、栗栖源嗣
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2012-06-20
    • Related Report
      2012 Annual Research Report
  • [Book] バイオインフォマティクス入門,2015

    • Author(s)
      日本バイオインフォマティクス学編(白井剛 編集代表者)
    • Total Pages
      176
    • Publisher
      慶應義塾大学出版会
    • Related Report
      2015 Annual Research Report
  • [Book] Methods in Molecular Biology vol. 12002014

    • Author(s)
      Ogawa T, Shirai T
    • Total Pages
      613
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report
  • [Book] 生命のビッグデータ利用の最前線2014

    • Author(s)
      辻 敏之, 白井 剛
    • Total Pages
      231
    • Publisher
      シーエムシー出版
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
  • [Book] Protein Engineering - Technology and Application2013

    • Author(s)
      Tomohisa Ogawa, Tsuyoshi Shirai
    • Total Pages
      22
    • Publisher
      InTech
    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] 耐熱性ミスマッチエンドヌクレアーゼの利用方法2014

    • Inventor(s)
      上森隆司, 石野良純, 相良武宏, 石野園子, 山上健, 白井剛
    • Industrial Property Rights Holder
      上森隆司, 石野良純, 相良武宏, 石野園子, 山上健, 白井剛
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-09-11
    • Related Report
      2014 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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