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Fundamental research for NMR structural analysis of human membrane proteins

Research Project

Project/Area Number 24370048
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionYokohama City University

Principal Investigator

TAKAHASHI Hideo  横浜市立大学, 大学院生命医科学研究科, 教授 (60265717)

Co-Investigator(Kenkyū-buntansha) TAKEUCHI Koh  産業技術総合研究所, 創薬分子プロファイリング研究センター, 主任研究員 (20581284)
Co-Investigator(Renkei-kenkyūsha) SAKAKURA Masayoshi  横浜市立大学, 大学院生命医科学研究科, 助教 (20334336)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2014: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2012: ¥7,930,000 (Direct Cost: ¥6,100,000、Indirect Cost: ¥1,830,000)
KeywordsNMR / 膜タンパク質 / 酵母
Outline of Final Research Achievements

Human membrane proteins (hMPs) are important targets in the structural biology field because they contain a lot of drug targets. However, expression of recombinant hMPs by conventional prokaryotic cells is usually difficult. In this study, we constructed a robust strategy to express hMPs using two yeast species, P. pastoris and K. lactis. We further developed a variety of methods to isotopically label recombinant hMPs for structural studies using nuclear magnetic resonance (NMR) spectroscopy. We expressed six hMPs in the yeast membranes, and some of them were labeled with 2H, 15N, and 13C in a methyl-group selective manner. Using these samples, we could obtain molecular properties and structural information of several hMPs. The protocol established in this study is a widely applicable method and will contribute to following NMR studies of hMPs.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (31 results)

All 2015 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 7 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (22 results) (of which Invited: 5 results) Book (1 results)

  • [Journal Article] Dynamic multidrug recognition by multidrug transcriptional repressor LmrR2014

    • Author(s)
      Takeuchi K, Tokunaga Y, Imai M, Takahashi H, Shimada I.
    • Journal Title

      Sci Rep

      Volume: 4 Issue: 1 Pages: 6922-6922

    • DOI

      10.1038/srep06922

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Allosteric enhancement of MAP kinase p38α's activity and substrate selectivity by docking interactions2014

    • Author(s)
      Tokunaga Y, Takeuchi K, Takahashi H, Shimada I
    • Journal Title

      Nat Struct Mol Biol

      Volume: 21 Issue: 8 Pages: 704-711

    • DOI

      10.1038/nsmb.2861

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structure-based approach to improve a small-molecule inhibitor by the use of a competitive peptide ligand.2014

    • Author(s)
      Ono K, Takeuchi K, Ueda H, Morita Y, Tanimura R, Shimada I, Takahashi H.
    • Journal Title

      Angew Chem Int Ed Engl

      Volume: 53 Issue: 10 Pages: 2597-2597

    • DOI

      10.1002/anie.201310749

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Perdeuteration and methyl-selective (1)H, (13)C-labeling by using a Kluyveromyces lactis expression system2013

    • Author(s)
      Miyazawa-Onami M, Takeuchi K, Takano T, Sugiki T, Shimada I, Takahashi H.
    • Journal Title

      J Biomol NMR

      Volume: 57 Issue: 3 Pages: 297-304

    • DOI

      10.1007/s10858-013-9789-8

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid identification of ligand-binding sites by using an assignment-free NMR approach2013

    • Author(s)
      Kodama Y, Takeuchi K, Shimba N, Ishikawa K, Suzuki E, Shimada I, Takahashi H.
    • Journal Title

      J Med Chem

      Volume: 56 Issue: 22 Pages: 9342-9350

    • DOI

      10.1021/jm4014357

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] NMRでリガンド分子の活性部位を探索する2013

    • Author(s)
      高橋栄夫
    • Journal Title

      化学

      Volume: 68 Pages: 39-43

    • Related Report
      2013 Annual Research Report
  • [Journal Article] NMR study of ligand release from asialoglycoprotein receptor under solution conditions in early endosomes2012

    • Author(s)
      Onizuka T, Shimizu H, Moriwaki Y, Nakano T, Kanai S, Shimada I, Takahashi H.
    • Journal Title

      FEBS J

      Volume: 279 Issue: 15 Pages: 2645-2656

    • DOI

      10.1111/j.1742-4658.2012.08643.x

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the Golgi association by the pleckstrin homology domain of the ceramide trafficking protein (CERT)2012

    • Author(s)
      Sugiki T, Takeuchi K, Yamaji T, Takano T, Tokunaga Y, Kumagai K, Hanada K, Takahashi H, and Shimada I
    • Journal Title

      J Biol Chem

      Volume: 287 Issue: 40 Pages: 33706-33718

    • DOI

      10.1074/jbc.m112.367730

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] NMR解析を指向した酵母発現系による安定同位体標識ヒト膜タンパク質試料の調製2015

    • Author(s)
      鈴木里佳、坂倉正義、伏見威俊、小池賢一郎、高橋栄夫
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-25 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 緩和現象を活用したNMRによる分子間相互作用解析2015

    • Author(s)
      高橋栄夫
    • Organizer
      第23回ERATOタンパク質関連情報交換会
    • Place of Presentation
      大阪
    • Year and Date
      2015-01-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 創薬とNMRと計算科学2015

    • Author(s)
      高橋栄夫
    • Organizer
      第358回CBI学会講演会
    • Place of Presentation
      東京
    • Year and Date
      2015-01-14
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] NMR構造解析に向けたヒト膜タンパク質の酵母発現系の構築2014

    • Author(s)
      坂倉正義、伏見威俊、小池賢一郎、鈴木里佳、山田有紗、高橋栄夫
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高難度タンパク質のNMR解析に向けた酵母発現系の活用2014

    • Author(s)
      高橋栄夫、大浪真由美、杉木俊彦、坂倉正義、竹内恒、嶋田一夫
    • Organizer
      第53回NMR討論会
    • Place of Presentation
      大阪
    • Year and Date
      2014-11-04 – 2014-11-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 緩和現象を活用したNMR相互作用解析技術2014

    • Author(s)
      高橋栄夫
    • Organizer
      若手NMR研究会
    • Place of Presentation
      千葉
    • Year and Date
      2014-07-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Drug Discovery and Design by NMR2014

    • Author(s)
      高橋栄夫
    • Organizer
      よこはまNMR研究会 第50回記念公開ワークショップ
    • Place of Presentation
      横浜
    • Year and Date
      2014-07-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] NMR解析を指向したヒト膜タンパク質の酵母発現系の構築2014

    • Author(s)
      坂倉正義、伏見威俊、小池賢一郎、高橋栄夫
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] NMRによるタンパク質被認識部位の同定法2014

    • Author(s)
      高橋栄夫
    • Organizer
      第1回蛋白質工学研究会ワークショップ
    • Place of Presentation
      横浜
    • Year and Date
      2014-05-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] NMRによるタンパク質相互作用とそのアロステリック阻害機構の解明2012

    • Author(s)
      高橋栄夫
    • Organizer
      第35回日本分子生物学会年会・ワークショップ「NMRで見るタンパク質の機能発現」
    • Place of Presentation
      福岡国際会議場(福岡)
    • Year and Date
      2012-12-12
    • Related Report
      2012 Annual Research Report
  • [Presentation] Pharmaceutical NMR techniques: NMR approach for ligand-based drug discovery2012

    • Author(s)
      H. Takahashi
    • Organizer
      Pharmaceutical NMR lecture series in Osaka
    • Place of Presentation
      大阪大学(大阪)
    • Year and Date
      2012-10-25
    • Related Report
      2012 Annual Research Report
  • [Presentation] NMR approach for ligand-based drug discovery: DIRECTION approach for the pharmacophore mapping of drug candidates2012

    • Author(s)
      H. Takahashi
    • Organizer
      The 3rd International Symposium on Drug Discovery and Design by NMR
    • Place of Presentation
      理研横浜研究所(横浜)
    • Year and Date
      2012-10-12
    • Related Report
      2012 Annual Research Report
  • [Presentation] A pharmacophore mapping by DIRECTION apaproach2012

    • Author(s)
      H. Takahashi
    • Organizer
      25th International Conference of Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Center (Lyon)
    • Year and Date
      2012-08-23
    • Related Report
      2012 Annual Research Report
  • [Presentation] Rapid identification of protein-protein interfaces for the construction of a complex model based on multiple unassigned signals by using time-sharing NMR measurements2012

    • Author(s)
      Y. Kodama
    • Organizer
      25th International Conference of Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Center (Lyon)
    • Year and Date
      2012-08-23
    • Related Report
      2012 Annual Research Report
  • [Presentation] 天然物リガンドの「鍵」構造を探索するNMR相互作用解析技術2012

    • Author(s)
      高橋栄夫
    • Organizer
      新学術領域研究天然物ケミカルバイオロジー~分子標的と活性制御~第2回公開シンポジウム
    • Place of Presentation
      東京大学「東京」
    • Year and Date
      2012-06-17
    • Related Report
      2012 Annual Research Report
  • [Presentation] 酵母K.lactis発現系を用いた高分子量蛋白質の重水素化およびメチル選択標識2012

    • Author(s)
      竹内怛
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインクあいち(名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 部位特異的アミノ酸選択標識とタンパク質立体構造を活用した相互作用界面の同定2012

    • Author(s)
      小玉優哉
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインクあいち(名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] MAPキナーゼp38aの活性および基質選択性のアロステリックな調節機構の解明2012

    • Author(s)
      徳永裕二
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインクあいち(名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] NMR for Drug Discovery

    • Author(s)
      H. Takahashi
    • Organizer
      RRR Workshop 2014
    • Place of Presentation
      京都・立命館大学朱雀キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] NMRによる高分子量タンパク質を標的としたリガンドエピトープ解析

    • Author(s)
      五百磐徹、坂倉正義、高橋栄夫
    • Organizer
      日本薬学会第134年会
    • Place of Presentation
      熊本大学工学部百周年記念館
    • Related Report
      2013 Annual Research Report
  • [Presentation] NMR構造解析を指向したヒト膜タンパク質の酵母発現系の構築

    • Author(s)
      坂倉正義、白石佑太、伏見威俊、小池賢一郎、高橋栄夫
    • Organizer
      日本薬学会第134年会
    • Place of Presentation
      熊本市総合体育館
    • Related Report
      2013 Annual Research Report
  • [Presentation] NMRを用いたAMPA型グルタミン酸受容体リガンド結合ドメインとそのリガンドの相互作用解析

    • Author(s)
      伊東優拡、坂倉正義、高橋栄夫
    • Organizer
      日本薬学会第134年会
    • Place of Presentation
      熊本市総合体育館
    • Related Report
      2013 Annual Research Report
  • [Book] 生体有機化学(橋本祐一, 村田道雄編著)「第7章タンパク質と生体小分子の相互作用2」2012

    • Author(s)
      高橋栄夫, 嶋田一夫
    • Total Pages
      220
    • Publisher
      東京化学同人
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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