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A novel regulation mechanism of cellular functions by intramembrane proteolysis

Research Project

Project/Area Number 24370054
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionKyoto University

Principal Investigator

AKIYAMA Yoshinori  京都大学, ウイルス研究所, 教授 (10192460)

Co-Investigator(Kenkyū-buntansha) MORI Hiroyuki  京都大学, ウイルス研究所, 准教授 (10243271)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2014: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2012: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Keywords大腸菌 / 膜プロテアーゼ / 膜内タンパク質切断 / 表層ストレス応答 / S2Pプロテアーゼ / 基質探索 / PDZドメイン
Outline of Final Research Achievements

The Escherichia coli σE extracytoplasmic stress response monitors and responds to folding stress in the cell envelope. A protease cascade directed at RseA, a membrane-spanning anti-σ that inhibits σE activity, controls this critical signal-transduction system. Stress cues activate DegS to cleave RseA; a second cleavage by RseP releases RseA from the membrane, enabling its rapid degradation.
We also analyzed the three-dimensional structure of the two tandemly arranged PDZ domains (PDZ tandem) present in the periplasmic region of RseP. Our results suggest that the PDZ tandem serves as a size-exclusion filter to accommodate the truncated form of RseA into the active center.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (10 results)

All 2014 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (4 results) (of which Invited: 1 results) Remarks (3 results)

  • [Journal Article] A structure-based model of substrate discrimination by a non-canonical PDZ tandem in the intramembrane-cleaving protease RseP.2014

    • Author(s)
      檜作 洋平, 小田 隆, 田畑 早苗, 川上-田村 恵子, 大井 里香, 佐藤 衛, 高木 淳一, 秋山 芳展, 禾 晃和
    • Journal Title

      Structure

      Volume: 22 Issue: 2 Pages: 326-336

    • DOI

      10.1016/j.str.2013.12.003

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression and purification of integral membrane metallopeptidase HtpX2014

    • Author(s)
      Arolas, J. L., García-Castellanos, R., Goulas, T., Akiyama, Y. and Gomis-Rüth, F. X.
    • Journal Title

      Protein Expr. Purif.

      Volume: 99C Pages: 113-118

    • DOI

      10.1016/j.pep.2014.04.008

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PDZ domains of RseP are not essential for sequential cleavage of RseA or stress-induced σ^E activation in vivo2012

    • Author(s)
      檜作 洋平, 秋山 芳展
    • Journal Title

      Molecular Microbiology

      Volume: 86 Issue: 5 Pages: 1232-1245

    • DOI

      10.1111/mmi.12053

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細菌表層ストレス応答制御に関わる膜内切断プロテアーゼRsePのタンデムPDZドメインによる切断基質選別機構の解析2014

    • Author(s)
      檜作洋平、小田 隆、田畑早苗、川上-田村恵子、大井里香、佐藤 衛、高木淳一、禾 晃和、秋山芳展
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Substrate discrimination by size-exclusion in the intramembrane protease RseP2014

    • Author(s)
      13.Hizukuri, Y., Oda, T., Tabata, S., Tamura-Kawakami, K., Oi, R., Sato, M., Takagi, J., Akiyama, Y., and Nogi, T.
    • Organizer
      IUCr 2014 - 23rd Congress and General Assembly
    • Place of Presentation
      Montreal, Canada
    • Year and Date
      2014-08-05 – 2014-08-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大腸菌膜内切断プロテアーゼRsePの基質認識におけるPDZドメインの役割.2013

    • Author(s)
      檜作洋平、禾 晃和、小田隆、田畑早苗、川上-田村恵子、佐藤衛、高木淳一、秋山芳展
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 大腸菌RIPプロテアーゼRsePのタンデムPDZドメインによる新たな機能制御メカニズム.2012

    • Author(s)
      檜作洋平, 他
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-14
    • Related Report
      2012 Annual Research Report
  • [Remarks] 京都大学ウイルス研究所・がん遺伝子分野

    • URL

      http://www.virus.kyoto-u.ac.jp/Lab/akiyama/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] がん遺伝子分野

    • URL

      http://www.virus.kyoto-u.ac.jp/Lab/akiyama/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.virus.kyoto-u.ac.jp/Lab/akiyama/index.html

    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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