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Molecular mechanisms of AAA proteins revealed by biochemical analyses and high-speed atomic force microscopic observations

Research Project

Project/Area Number 24370056
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionKumamoto University

Principal Investigator

OGURA Teru  熊本大学, 発生医学研究所, 教授 (00158825)

Co-Investigator(Renkei-kenkyūsha) OKUNO Takashi  山形大学, 理学部, 准教授 (80411031)
YAMANAKA Kunitoshi  熊本大学, 発生医学研究所, 准教授 (90212290)
ESAKI Masatoshi  熊本大学, 発生医学研究所, 助教 (70437911)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2014: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2012: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
KeywordsAAAタンパク質 / 分子シャペロン / プロテアソーム / p97/VCP/CDC-48/Cdc48 / Katanin / 高速原子間力顕微鏡 / ミトコンドリア / 微小管 / katanin / p97/CDC-48/Cdc48 / ポリグルタミン凝集体 / 26Sプロテアソーム / 神経変性疾患
Outline of Final Research Achievements

AAA family chaperones/proteases form a hexameric ring structure. ATP-dependent rotation of the AAA chaperone p97 was analyzed by high-speed AFM, and a novel model for the p97 action against substrate has been proposed. It has been found that VCP, a human p97 homolog, binds to amyloid fibrils of TDP-43. UFD-3 is an adapter of CDC-48, a C. elegans p97 homolog, and has been revealed to regulate polyglutamine aggregate formation. Abnormal mitochondrial morphology caused by a mutation of Cdc48, a yeast p97 homolog, was precisely analyzed by advanced microscopic techniques. Dynamics of the 26S proteasome and its complex with a substrate were analyzed by high-speed AFM. Microtubule severing by katanin was analyzed, and a novel model for the mechanism of katanin has been proposed. Functional importance of mitochondrial Bcs1 was revealed.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (52 results)

All 2015 2014 2013 2012 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (29 results) (of which Invited: 2 results) Book (4 results) Remarks (9 results)

  • [Journal Article] Microtubule severing by katanin p60 AAA+ ATPase requires the C-terminal acidic tails of both α- and β-tubulins and basic amino acid residues in the AAA+ ring pore.2015

    • Author(s)
      Johjima, A., Noi, K., Nishikori, S., Ogi, H., Esaki, M., and Ogura, T.
    • Journal Title

      J. Biol. Chem.

      Volume: 印刷中 Issue: 18 Pages: 11762-11770

    • DOI

      10.1074/jbc.m114.614768

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of C-terminal adaptors, UFD-2 and UFD-3, of CDC-48 on the polyglutamine aggregation in C. elegans.2015

    • Author(s)
      Murayama, Y., Ogura, T., and Yamanaka, K.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 459 Issue: 1 Pages: 154-160

    • DOI

      10.1016/j.bbrc.2015.02.088

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Serial block-face scanning electron microscopy for three-dimensional analysis of morphological changes in mitochondria regulated by Cdc48p/p97 ATPase.2014

    • Author(s)
      Miyazaki, N., Esaki, M., Ogura, T., and Murata, K.
    • Journal Title

      J. Struct. Biol.

      Volume: 187 Issue: 2 Pages: 187-193

    • DOI

      10.1016/j.jsb.2014.05.010

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole-cell imaging of the budding yeast Saccharomyces cerevisiae by high-voltage scanning transmission electron tomography.2014

    • Author(s)
      Murata, K., Esaki, M., Ogura, T., Arai, S., Yamamoto, Y., and Tanaka, N.
    • Journal Title

      Ultramicroscopy

      Volume: 146 Pages: 39-45

    • DOI

      10.1016/j.ultramic.2014.05.008

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A conserved a helix of Bcs1, a mitochondrial AAA chaperone, is required for the Respiratory Complex III maturation2014

    • Author(s)
      Rie Sawamura, Teru Ogura and Masatoshi Esaki
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 443 Issue: 3 Pages: 997-1002

    • DOI

      10.1016/j.bbrc.2013.12.084

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p972013

    • Author(s)
      K. Noi, D. Yamamoto, S. Nishikori, K. Arita-Morioka, T. Ando, T. Ogura
    • Journal Title

      Structure

      Volume: 21 Issue: 11 Pages: 1992-2002

    • DOI

      10.1016/j.str.2013.08.017

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CDC-48/p97 is required for proper meiotic chromosome segregation via controlling AIR-2/Aurora B kinase localization in Caenorhabditis elegans.2012

    • Author(s)
      Sasagawa Y, Higashitani A, Urano T, Ogura T, Yamanaka K.
    • Journal Title

      J Struct Biol.

      Volume: 179 Issue: 2 Pages: 104-111

    • DOI

      10.1016/j.jsb.2012.06.009

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Caenorhabditis elegans fidgetin homolog FIGL-1, a nuclear-localized AAA ATPase, binds to SUMO.2012

    • Author(s)
      Onitake, A., Yamanaka, K., Esaki, M., and Ogura, T.
    • Journal Title

      J. Struct. Biol.

      Volume: (in press) Issue: 2 Pages: 143-151

    • DOI

      10.1016/j.jsb.2012.04.022

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The C-terminal -helix of SPAS-1, a Caenorhabditis elegans spastin homologue, is crucial for microtubule severing.2012

    • Author(s)
      Onitake, A., Matsushita-Ishiodori, Y., Johjima, A., Esaki, M., Ogura, T., and Yamanaka, K.
    • Journal Title

      J. Struct. Biol.

      Volume: (in press) Issue: 2 Pages: 138-142

    • DOI

      10.1016/j.jsb.2012.04.010

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cdc48p/p97-mediated regulation of mitochondrial morphology is Vms1p independent.2012

    • Author(s)
      Esaki, M., and Ogura, T.
    • Journal Title

      J. Struct. Biol.

      Volume: (in press) Issue: 2 Pages: 112-120

    • DOI

      10.1016/j.jsb.2012.04.017

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] ホウレンソウ由来天然FtsHの精製と解析2014

    • Author(s)
      鈴木 香於里、大枝 弘明、加藤 裕介、有田 (森岡)健一、野井 健太郎、原 怜、山本 亘、小椋 光、久堀 徹、天野 豊己
    • Organizer
      日本生体エネルギー研究会 第40回討論会
    • Place of Presentation
      松山市 愛媛大学 南加記念ホール
    • Year and Date
      2014-12-12 – 2014-12-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒト疾患関連AAAタンパク質BCS1Lの酵母ホモログBcs1pの機能解析2014

    • Author(s)
      澤村 理英、江崎 雅俊、山中 邦俊、小椋 光
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ポリグルタミン凝集体形成における線虫CDC-48 C末端アダプターの役割2014

    • Author(s)
      村山 佑樹、小椋 光、山中 邦俊
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] AAAタンパク質kataninによる微小管切断におけるAAAドメインのpore領域の残基とtubulin C末端配列の重要性2014

    • Author(s)
      城島 愛、野井 健太郎、錦織 伸吾、荻 博次、江崎 雅俊、小椋 光
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Cdc48/p97はFzo1の分解促進によってミトコンドリア融合反応を制御する2014

    • Author(s)
      江崎 雅俊、宮崎 直幸、村田 和義、小椋 光
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡によるAAAシャペロンp97の主要ATPase(D2)リングの構造変化の直接観察2014

    • Author(s)
      山本 大輔、野井 健太郎、有田 (森岡) 健一、小椋 光
    • Organizer
      第52回 日本生物物理学会年会
    • Place of Presentation
      札幌市 札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Visualization of dynamics of the 26S proteasome and proteasome-substrate complexes by high-speed AFM2014

    • Author(s)
      Okuno, T., Noi, K., Okawa, A., Tsuchiya, H., Saeki, Y., Takahashi, K., Inobe, T., Yamanaka, K., and Ogura, T.
    • Organizer
      Key Forum: From Stem Cells to Organs
    • Place of Presentation
      熊本市 熊本市医師会館
    • Year and Date
      2014-09-04 – 2014-09-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡によるAAAシャペロンp97の主要ATPase(D2)リングの直接観察2014

    • Author(s)
      山本 大輔、野井 健太郎、有田 (森岡) 健一、小椋 光
    • Organizer
      第14回 日本蛋白質科学会年会
    • Place of Presentation
      横浜市 ワークピア横浜/横浜産貿ホールマリネリア
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Adaptors of p97 and disease-associated p97 mutations.2014

    • Author(s)
      Yamanaka, K., Murayama, Y., and Ogura, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] Yeast Cdc48-20S proteasome complex in vitro and in vivo.2014

    • Author(s)
      Esaki, M., Noi, K., and Ogura, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] High-speed AFM imaging of the 26S proteasome dynamics.2014

    • Author(s)
      Okuno, T., Noi, K., Okawa, A., Tsuchiya, H., Saeki, Y., Takahashi, K., Inobe, T., Yamanaka, K., and Ogura, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] Observation of AAA chaperone p97 by high-speed AFM.2014

    • Author(s)
      Yamamoto, D., Noi, K., Arita-Morioka, K, Ando, T., and Ogura, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] Clamp loading by Gamma complex.2014

    • Author(s)
      Karata, K., and Ogura, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] Biochemical properties of FtsH protease from plants.2014

    • Author(s)
      Ueda, E., Noi, K., Arita-Morioka, K., Ogura, T., Sakamoto, W., Hisabori, T., and Amano, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] High-speed AFM observation of ATP-dependent rotation of the AAA chaperone p97 and its interaction with TDP-43 amyloid fibrils.2014

    • Author(s)
      Noi, K., Yamamoto, D., Arita-Morioka, K., Ando, T., and Ogura, T.
    • Organizer
      231st IMEG seminars & Minisymposium
    • Place of Presentation
      熊本市 熊本大学発生医学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] Dynamics of p97 and the 26S proteasome in action revealed by high-speed atomic force microscopy.2013

    • Author(s)
      Ogura, T., Noi, K., Okuno, T., Arita-Morioka, K., Yamamoto, D., Okawa, A., Tsuchiya, H., Saeki, Y., Ando, T., Esaki, M., and Yamanaka, K.
    • Organizer
      EMBO Workshop on AAA+ Proteins
    • Place of Presentation
      Commundo Hotel, Neuss, Germany.
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Functional analysis of disease-associated mutant CDC-48/p97/VCP in C. elegans.2013

    • Author(s)
      Yamanaka, K., Murayama, Y., and Ogura, T.
    • Organizer
      EMBO Workshop on AAA+ Proteins
    • Place of Presentation
      Commundo Hotel, Neuss, Germany.
    • Related Report
      2013 Annual Research Report
  • [Presentation] Non-consevation of the aromatic residue in the D1 pore loop of yeast Cdc48 is essential for cell viability.2013

    • Author(s)
      Esaki, M., and Ogura, T.
    • Organizer
      EMBO Workshop on AAA+ Proteins
    • Place of Presentation
      Commundo Hotel, Neuss, Germany.
    • Related Report
      2013 Annual Research Report
  • [Presentation] Biochemical analysis of molecular mechanisms of the interaction between VCP/p97 and amyloid fibrils of TDP-43.2013

    • Author(s)
      Noi, K., Arita-Morioka, K., Ogi, H., Hirao, M., and Ogura, T.
    • Organizer
      EMBO Workshop on AAA+ Proteins
    • Place of Presentation
      Commundo Hotel, Neuss, Germany.
    • Related Report
      2013 Annual Research Report
  • [Presentation] The N-terminal region of Bcs1p is important for the respiratory chain complex III assembly.2013

    • Author(s)
      Sawamura, R., Esaki, M., and Ogura, T.
    • Organizer
      EMBO Workshop on AAA+ Proteins
    • Place of Presentation
      Commundo Hotel, Neuss, Germany.
    • Related Report
      2013 Annual Research Report
  • [Presentation] AAA chaperones, focusing on the molecular mecanism of p97.2013

    • Author(s)
      Ogura, T., Noi, K., Arita-Morioka, K., Yamamoto, D., Ando, T., Nishikori, S., Esaki, M., and Yamanaka, K.
    • Organizer
      EMBO Conference The biology of molecular chaperones
    • Place of Presentation
      Margherita de Pula, Italy
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 植物由来FtsHプロテアーゼの分子機構.2013

    • Author(s)
      斉藤 勝広, 植田 依里, 柿本 衿菜, 鈴木 香於里, 原 怜, 久堀 徹, 加藤 裕介, 坂本 亘, 野井 健太郎, 有田 健一, 小椋 光, 天野 豊己
    • Organizer
      日本生体エネルギー研究会 第39回討論会
    • Place of Presentation
      静岡市, 静岡県コンベンションアーツセンター
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫を用いた疾患型変異CDC-48/p97/VCPの機能解析2013

    • Author(s)
      山中 邦俊, 村山 佑樹, 小椋 光
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸市、神戸国際展示場
    • Related Report
      2013 Annual Research Report
  • [Presentation] In vivo においてCdc48は20Sプロテアソーム複合体と相互作用する.2013

    • Author(s)
      江崎 雅俊, 野井 健太郎, 佐伯 泰, 小椋 光
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸市、神戸国際展示場
    • Related Report
      2013 Annual Research Report
  • [Presentation] 呼吸鎖複合体III形成におけるAAA分子シャペロンBcs1pのN末端の機能解析.2013

    • Author(s)
      澤村 理英, 江崎 雅俊, 小椋 光
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸市、神戸国際展示場
    • Related Report
      2013 Annual Research Report
  • [Presentation] 高速AFMによる26Sプロテアソームのダイナミクス解析.2013

    • Author(s)
      奥野 貴士, 野井 健太郎, 大川 阿紀子, 土屋 光, 佐伯 泰, 高橋 一暢, 伊野部 智由, 山中 邦俊, 小椋 光
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸市、神戸国際展示場
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分子シャペロンVCP/p97とTDP-43アミロイド線維の相互作用の分子機構の解析.2013

    • Author(s)
      野井 健太郎, 有田ー森岡 健一, 小椋 光
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取市、とりぎん文化会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] High-speed atomic force microscopy of ATP-dependent rotational movementsof p97/VCP and its interaction with amyloid fibrils of TDP-43.2012

    • Author(s)
      Noi, K., Yamamoto, D., Arita-Morioka, K., Nishikori, S., Ando, T., and Ogura, T.
    • Organizer
      3rd Kanazawa Bio-AFM Workshop
    • Place of Presentation
      金沢・KKRホテル金沢
    • Related Report
      2012 Annual Research Report
  • [Presentation] 分子シャペロンVCP/p97とTDP-43アミロイド線維の相互作用の分子機構の解析.2012

    • Author(s)
      野井 健太郎,有田・森岡 健一,小椋 光
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡・福岡国際会議場,マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Book] Subcell. Biochem2013

    • Author(s)
      Okuno, T., and Ogura, T.
    • Total Pages
      17
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] Handbook of Proteolytic Enzymes, 3rd edition2013

    • Author(s)
      Ogura, T., Okuno, T., Suno, R., and Akiyama, Y.
    • Total Pages
      8
    • Publisher
      Elsevier Ltd.
    • Related Report
      2013 Annual Research Report
  • [Book] FtsH protease-mediated regulation of various cellular functions. Subcell.Biochem, 66, Regulated proteolysis in microorganisms. D. A. Dougan (ed.)2013

    • Author(s)
      Okuno, T., and Ogura, T.
    • Total Pages
      17
    • Publisher
      Springer
    • Related Report
      2012 Annual Research Report
  • [Book] FtsH protease. In Handbook of Proteolytic Enzymes, 3rd edition, N. Rawlings andG. Salvesen (ed.)2013

    • Author(s)
      Ogura, T., Okuno, T., Suno, R., and Akiyama, Y.
    • Total Pages
      8
    • Publisher
      Elsevier Ltd.
    • Related Report
      2012 Annual Research Report
  • [Remarks] 発生医学研究所分子細胞制御分野のホームページ

    • URL

      http://mukb.medic.kumamoto-u.ac.jp/fukusei/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 発生医学研究所分子細胞制御分野AAAのホームページ

    • URL

      http://mukb.medic.kumamoto-u.ac.jp/AAA/aaainfo.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 発生医学研究所のホームページ

    • URL

      http://www.imeg.kumamoto-u.ac.jp/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所分子細胞制御分野のホームページ

    • URL

      http://mukb.medic.kumamoto-u.ac.jp/fukusei/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所分子細胞制御分野 AAAホームページ

    • URL

      http://mukb.medic.kumamoto-u.ac.jp/AAA/aaainfo.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所のホームページ

    • URL

      http://www.imeg.kumamoto-u.ac.jp/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所分子細胞制御分野のホームページ

    • URL

      http://mukb.medic.kumamoto-u.ac.jp/fukusei/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所分子細胞制御分野 AAAホームページ

    • URL

      http://mukb.medic.kumamoto-u.ac.jp/AAA/aaainfo.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所のホームページ

    • URL

      http://www.imeg.kumamoto-u.ac.jp/index.html

    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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