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The elucidation of origin of rotor in rotary ATPase/synthases by functional and structural analysis

Research Project

Project/Area Number 24370059
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionKyoto Sangyo University

Principal Investigator

YOKOYAMA Ken  京都産業大学, 総合生命科学部, 教授 (70271377)

Co-Investigator(Kenkyū-buntansha) IMADA Katsumi  大阪大学, 理学研究科, 教授 (40346143)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2014: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2013: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2012: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Keywordsbioenergetics / V-ATPase / FoF1 / ATP synthase / molecular motor / molecular evolution / flagellar motor / rotary motor / ATPase / 回転分子モーター / べん毛 / F-ATPase / Bioenergetics / Rotary motor / 分子モーター / 分子進化 / 回転
Outline of Final Research Achievements

In this study, we revealed that FliJ of bacterial flagella motor is possibly an origin of the rotor in rotary ATPase/synthase such as V- or F-ATPases. Actually, FliJ shows a rotor like function in A3B3 based on both biochemical and structural analysis. This strongly suggests that the rotor domains of the rotary ATPases and the flagellar export apparatus share a common evolutionary origin. Domain-swapped chimeric V1 consisting of both T. thermophilus and E. hirae enzymes were generated. Analysis for these enzymes indicated that the interaction between the nucleotide binding and C-terminal domains of the catalytic A subunit critical in reduction of the ADP inhibition. Based on the reconstituted experiments, we proposed a model in which the relationship between V1-DF and Vo-C corresponds to that between a slotted screwdriver and a head of slotted screw, consistent with our previous result in which the central rotor apparatus is not the major factor for the association of V1 with Vo.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (23 results)

All 2015 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (11 results) (of which Invited: 3 results) Book (1 results) Remarks (3 results)

  • [Journal Article] The ingenious structure of central rotor apparatus in VoV1; key for both complex disassembly and energy coupling between V1 and Vo.2015

    • Author(s)
      Atsuko Nakanishi, Jun-ichi Kishikawa, Masatada Tamakoshi, and Ken Yokoyama
    • Journal Title

      PLOS one

      Volume: 10 Issue: 3 Pages: 1-13

    • DOI

      10.1371/journal.pone.0119602

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Molecular basis of ADP inhibition of vacuolar (V)-type ATPase/synthase.2014

    • Author(s)
      J. Kishikawa, A. Nakanishi, S. Furuike, M. Tamakoshi, K. Yokoyama
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Issue: 1 Pages: 403-412

    • DOI

      10.1074/jbc.m113.523498

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] F1subunit reinforces torque generation in V-ATPase2014

    • Author(s)
      Junichi Kishikawa, Akihiko Seino, Atsuko Nakanishi, Naciye Esma Tirtom, Hiroyuki Noji, Ken Yokoyama, Kumiko Hayashi
    • Journal Title

      European Biophysics Journal

      Volume: 43 Issue: 8-9 Pages: 415-422

    • DOI

      10.1007/s00249-014-0973-x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Common evolutionary origin for the rotor domain of rotary ATPases and Flagellar protein export apparatus.2013

    • Author(s)
      Kishikawa, J., et al
    • Journal Title

      PLoS One

      Volume: 8 Issue: 5 Pages: 64692013-64692013

    • DOI

      10.1371/journal.pone.0064695

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of two distinct states of disassembly in the bacterial V-ATPase from Thermus thermophilus.2013

    • Author(s)
      K. Tani, C. P. Arthur, M. Tamakoshi, K. Yokoyama, K. Mitsuoka, Y. Fujiyoshi and C. Gerle
    • Journal Title

      Microscopy

      Volume: 62 Issue: 4 Pages: 467-474

    • DOI

      10.1093/jmicro/dft020

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanical Modulation of ATP-Binding Affinity of V1-ATPase2013

    • Author(s)
      Esma Tirtom N
    • Journal Title

      J Biol Chem

      Volume: 288 Issue: 1 Pages: 619-623

    • DOI

      10.1074/jbc.m112.420729

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstitution of vacuolar-type rotary H+-ATPase/synthase from Thermus thermophilus.2012

    • Author(s)
      Kishikawa J, Yokoyama K.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 287 Issue: 29 Pages: 24597-24603

    • DOI

      10.1074/jbc.m112.367813

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule analysis of inhibitory pausing states of Vl-ATPase.2012

    • Author(s)
      Uner NE, Nishikawa Y, Okuno D, Nakano M, Yokoyama K, Noji H.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 287 Pages: 28327-28335

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] The ingenious structure of central rotor apparatus  in VoV1; torque transmission mechanism in the central rotor of VoV1.2014

    • Author(s)
      横山 謙
    • Organizer
      日本生物物理学会年会 シンポジウム
    • Place of Presentation
      札幌コンベンションセンター、札幌市
    • Year and Date
      2014-09-19 – 2014-09-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular basis of ADP-inhibition of V type ATPase/synthase2014

    • Author(s)
      Jun-ichi Kishikawa, Atsuko Nakanishi
    • Organizer
      European Bioenergetics Conference
    • Place of Presentation
      ポルトガル/リスボン大学
    • Year and Date
      2014-07-12 – 2014-07-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] ドメインスワッピングによる V-ATPase の機能解析/ Functional analysis of V-ATPase using domain swapping techniques2014

    • Author(s)
      岸川 淳一、中西 温子、波多野 友香、 横山 謙
    • Organizer
      第14回日本蛋白質化学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール、横浜市
    • Year and Date
      2014-06-25 – 2014-06-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] V1 と Vo 間の回転力の伝わり方2014

    • Author(s)
      横山 謙
    • Organizer
      分子モーター討論会,
    • Place of Presentation
      大阪大学、大阪府吹田市
    • Year and Date
      2014-06-19 – 2014-06-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular basis of ADP-inhibition of V type  ATPase/synthase.2014

    • Author(s)
      横山 謙
    • Organizer
      ATPase symposium
    • Place of Presentation
      東京大学、東京都文京区
    • Year and Date
      2014-05-14 – 2014-05-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular basis of ADP-inhibition of V type ATPase/synthase2013

    • Author(s)
      J. Kishikawa, A. Nakanishi, S. Furuike, M. Tamakoshi, K. Yokoyama
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜市
    • Related Report
      2013 Annual Research Report
  • [Presentation] V-ATPase の中心回転軸におけるトルク伝達機構2013

    • Author(s)
      中西温子,岸川淳一,横山謙
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜市
    • Related Report
      2013 Annual Research Report
  • [Presentation] F-subunit reinforces torque generation in V-ATPase2013

    • Author(s)
      J. Kishikawa, A. Seino, A. Nakanishi, N.E. Tirtom, H. Noji, K. Yokoyama, K. Hayashi
    • Organizer
      The 51th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of the MgADP-inhibition mechanism of VoV1 by domain swapping approach2013

    • Author(s)
      J. Kishikawa, A. Nakanishi, S. Furuike, K. Yokoyama
    • Organizer
      The 51th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 回転分子モーターの中心回転軸の分子進化2013

    • Author(s)
      岸川淳一, 中西 温子, 中村 修一, 南野 徹, 今田 勝巳,横山 謙
    • Organizer
      日本生体エネルギー研究会 39第回討論会
    • Place of Presentation
      静岡市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 好熱菌V-ATPaseの再構成とドメインキメラV1を用いたATP合成/分解反応2012

    • Author(s)
      横山謙、岸川淳一
    • Organizer
      日本生体エネルギー研究会
    • Place of Presentation
      岡山大学(招待講演)
    • Year and Date
      2012-12-22
    • Related Report
      2012 Annual Research Report
  • [Book] 膜タンパク質構造研究2013

    • Author(s)
      横山謙, 古池晶, 岸川淳一
    • Total Pages
      10
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report
  • [Remarks] Membrane bioenergetics metabolism Laboratory

    • URL

      http://www.cc.kyoto-su.ac.jp/~yokoken/index-j.htm

    • Related Report
      2014 Annual Research Report
  • [Remarks] ようこ そ!膜生体エネルギー研究室へ

    • URL

      http://www.cc.kyoto-su.ac.jp/~yokoken/index-j.htm

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.cc.kyoto-su.ac.jp/~yokoken/index-j.him

    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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