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Single-molecule analysis of functions of biomolecules by linear zero-mode waveguides

Research Project

Project/Area Number 24370061
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

FUNATSU Takashi  東京大学, 薬学系研究科, 教授 (00190124)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2014: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2013: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2012: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords1分子生理・化学 / 1分子イメージング / ナノ計測 / 1分子生理学・生化学 / 1分子生理学・生化学 / 1分子イメージング
Outline of Final Research Achievements

Actin dynamics contribute to many cellular processes, while the detail mechanism of actin polymerization is unknown. In this study, single molecule imaging of actin polymerization was performed to answer this question.
As critical concentration of actin is >100 nM, it is not possible to observe actin polymerization at single molecule level by total internal reflection fluorescence microscopy. Hence, we applied a linear zero-mode waveguide (ZMW), which has a 100-nm wide slit structure, allowing single molecule imaging at higher concentrations.
We found that single BODIPY-FL-labelled actin was observed in a linear ZMW at 100 nM. F-actin was immobilized in a linear ZMW. Actin elongated in a linear ZMW at a similar elongation rate on a cover glass. Actin polymerization at a single molecule level in a linear ZMW is now under investigation.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (21 results)

All 2015 2014 2013 2012

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (18 results) (of which Invited: 3 results)

  • [Journal Article] Nascent secM chain outside the ribosome reinforces translation arrest2015

    • Author(s)
      Zhuohao Yang, Ryo Iizuka, Takashi Funatsu
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 3 Pages: e0122017-e0122017

    • DOI

      10.1371/journal.pone.0122017

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Integrated Channel Selector for Directing Fluid Flow Using Thermoreversible Gelation Controlled by a Digital Mirror Device2013

    • Author(s)
      Y. Shirasaki, M. Goto, M. Yamagishi, H. Sugino, T. Arakawa, J. Mizuno, S. Shoji, T. Funatsu, O. Ohara
    • Journal Title

      Journal of Sensorsvol.

      Volume: 2013 Pages: 61-61

    • DOI

      10.1155/2013/436492

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single - molecule Observation of Protein Folding in Symmetric Gro EL- (Gro EL)_2 Complexes2012

    • Author(s)
      Yodai Takei and Takashi Funatsu, et al.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 287 Pages: 41118-41125

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Imaging of thermogenesis in living cells using fluorescent polymeric thermometer2015

    • Author(s)
      Kohki Okabe, Takashi Funatsu
    • Organizer
      the 59th Annual Meeting of the Biophysical Society
    • Place of Presentation
      Convention center, Baltimore, Maryland, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] N-terminal region of SecM is essential for its stable translation arrest2014

    • Author(s)
      Zhuohao Yang, Ryo Iizuka, Takashi Funatsu
    • Organizer
      第52回生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター、札幌、北海道
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Single molecule observation of actin polymerization in linear zero-mode waveguide2014

    • Author(s)
      Masamichi Yamamoto, Makoto Tsunoda, Shun Higano, Kotaro Okubo, Takashi Tanii, Takashi Funatsu
    • Organizer
      第52回生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター、札幌、北海道
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ナノスリット基板を用いたkinesinの化学力学共訳メカニズムの解明2014

    • Author(s)
      磯田真美、角田誠、大久保幸太朗、宇佐美篤史、谷井孝至、船津高志
    • Organizer
      第12回次世代を担う若手のためのフィジカル・ファーマフォーラム(PPF)201
    • Place of Presentation
      箱根高原ホテル、足柄下郡、神奈川県
    • Year and Date
      2014-07-14 – 2014-07-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analyzing the functions and interactions pf protein molecules by micro- and nano-devices2014

    • Author(s)
      Takashi Funatsu
    • Organizer
      31st International Conference of Photopolymer Science and Technology (ICPST-31)
    • Place of Presentation
      University Convention Hall, Chiba University, Chibashi, Japan
    • Year and Date
      2014-07-08 – 2014-07-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] マイクロ・ナノデバイスを用いた生体分子の機能と相互作用の解析2013

    • Author(s)
      船津高志
    • Organizer
      第48回構造生物応用研究会
    • Place of Presentation
      アークホテル仙台青葉通り、仙台市、宮城県
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Single-molecule investigation of the interaction between ribosome and SecM arrest sequence2013

    • Author(s)
      Zhuohao Yang, Ryo Iizuka, Takashi Funatsu
    • Organizer
      8th Asian Biophysics Association Symposium
    • Place of Presentation
      Ranada Plaza Hotel, Jeju, Korea
    • Related Report
      2013 Annual Research Report
  • [Presentation] マイクロドロップレットの生命科学研究への応用2013

    • Author(s)
      船津高志
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜、横浜市、神奈川県
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 1分子力学測定によるSecM 翻訳アレスト解除機構の解析2013

    • Author(s)
      楊倬皓、飯塚怜、船津高志
    • Organizer
      第12回次世代を担う若手ファーマ・バイオフォーラム2013
    • Place of Presentation
      東京大学薬学部、文京区、東京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Single-molecule investigation of the force required to release SecM-mediated translation arrest2013

    • Author(s)
      Zhuohao Yang, Ryo Iizuka, Takashi Funatsu
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館、京都市、京都府
    • Related Report
      2013 Annual Research Report
  • [Presentation] Observation of actin polymerization in linear zero-mode waveguide2013

    • Author(s)
      Masamichi Yamamoto, Makoto Tsunoda, Shun Higano, Kotaro Okubo, Takashi Tanii, Takashi Funatsu
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館、京都市、京都府
    • Related Report
      2013 Annual Research Report
  • [Presentation] Probing single-molecule enzymatic dynamics ofβ-glucosidase using zero-mode waveguides2013

    • Author(s)
      Ryo Iizuka and Takashi Funatsu, et al.
    • Organizer
      Biophysical Society 57th Annual Meeting
    • Place of Presentation
      Philadelphia, Pennsylvania, USA
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生体分子の機能と相互作用の1分子蛍光イメージング2013

    • Author(s)
      船津高志
    • Organizer
      日本薬学会第133年会
    • Place of Presentation
      パシフィコ横浜、横浜市(招待講演)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生細胞イメージングによる生命機能解明2012

    • Author(s)
      岡部弘基、船津高志
    • Organizer
      日本バイオイメージング学会第21回学術集会
    • Place of Presentation
      国立京都国際会館、京都市(招待講演)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Monitering the single-molecule enzymatic activity ofβ-glucosidase in a microchamber array chip2012

    • Author(s)
      Kentaro Tahara and Takashi Funatsu, et al.
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス、名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Imaging of temperature distribution in a living cell2012

    • Author(s)
      Kohki Okabe, and Takashi Funatsu, et al.
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス、名古屋市(招待講演)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Direct observation of protein folding mediated by thr football-shaped GroEL-GroES complex2012

    • Author(s)
      Yodai Takei and Takashi Funatsu, et al.
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス、名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] シャペロニンGroEL-GroESの反応サイクルに対する再検討2012

    • Author(s)
      船津高志
    • Organizer
      大阪大学蛋白質研究所セミナー「分子シャペロンの機能発現の新展開と細胞制御」
    • Place of Presentation
      大阪大学吹田キャンパス、吹田市(招待講演)
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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