• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Role of supersaturation in the formation of amyloid fibrils

Research Project

Project/Area Number 24370067
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

GOTO Yuji  大阪大学, たんぱく質研究所, 教授 (40153770)

Co-Investigator(Kenkyū-buntansha) YAGI Hisashi  鳥取大学, 工学部, 助教 (10432494)
Co-Investigator(Renkei-kenkyūsha) SAKURAI Kazumasa  近畿大学, 先端科学研究所, 講師 (10403015)
KAJI Yuichi  筑波大学, 人間総合科学研究科, 准教授 (50361332)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2014: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2013: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2012: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Keywords蛋白質 / フォールディング / アミロイド線維 / 凝集 / 超音波 / β2ミクログロブリン / アミロイドβペプチド / αシヌクレイン / β2ミクログロブリン
Outline of Final Research Achievements

Amyloid fibrils are fibrillar aggregates of denatured proteins associated with various amyloidoses. Amyloid fibrils form in the supersaturated solutions of precursor proteins through a nucleation and growth mechanism. We revisited "supersaturation" and studied its role in amyloid fibrillation.
We showed that ultrasonication is one of the most effective agitations to force spontaneous fibrillation and constructed a HANdai Amyloid Burst Inducer (HANABI), which combines the use of a water-bath-type ultrasonicator and microplate reader. HANABI makes possible a high-throughput analysis of amyloid fibrillation.
On the other hand, the term amorphous aggregate has been collectively used for other types of aggregates, which have not been the targets of intensive research. We showed that amyloid fibrils and amorphous aggregates were similar to the crystals and glasses of substances, respectively, explaining comprehensively the kinetics and thermodynamics of protein aggregation.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (31 results)

All 2015 2014 2013 2012 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results,  Acknowledgement Compliant: 5 results,  Open Access: 2 results) Presentation (11 results) (of which Invited: 10 results) Remarks (3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Small Liposomes Accelerate the Fibrillation of Amyloid β2015

    • Author(s)
      Mayu S. Terakawa, Hisashi Yagi, Masayuki Adachi, Young-Ho Lee, Yuji Goto
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 290 Issue: 2 Pages: 815-826

    • DOI

      10.1074/jbc.m114.592527

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Solubility and supersaturation-dependent protein misfolding revealed by ultrasonication.2014

    • Author(s)
      Lin, Y., Lee, Y.-H., Yoshimura, Y., Yagi, Y. and Goto, Y.
    • Journal Title

      Langmuir

      Volume: 30 Issue: 7 Pages: 1845-1854

    • DOI

      10.1021/la403100h

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry.2014

    • Author(s)
      Ikenoue, T., Lee, Y.-H., Kardos, J., Yagi, H., Ikegami, T., Naiki, H. and Goto, Y.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 111 Issue: 18 Pages: 6654-6659

    • DOI

      10.1073/pnas.1322602111

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Supersaturation-limited Amyloid Fibrillation of Insulin Revealed by Ultrasonication2014

    • Author(s)
      Hiroya Muta, Young-Ho Lee, Jozsef Kardos, Yuxi Lin, Hisashi Yagi, Yuji Goto
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 289 Issue: 26 Pages: 18228-18238

    • DOI

      10.1074/jbc.m114.566950

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elongation of amyloid fibrils through lateral binding of monomers revealed by total internal reflection fluorescence microscopy.2014

    • Author(s)
      Yagi, H., Abe, Y., Takayanagi, N. and Goto, Y.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1844 Issue: 10 Pages: 1881-1888

    • DOI

      10.1016/j.bbapap.2014.06.014

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Cold denaturation of alpha-synuclein amyloid fibrils.2014

    • Author(s)
      Ikenoue, T. , Lee, Y.-H. , Kardos, J., Sakai, M., Yagi, H., Kawata, Y. and Goto, Y.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 53 Issue: 30 Pages: 7799-7804

    • DOI

      10.1002/anie.201403815

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] High-throughput analysis of the ultrasonication-forced amyloid fibrillation reveals underlying mechanism of the large fluctuation in the lag time2014

    • Author(s)
      Ayaka Umemoto, Hisashi Yagi, Masatomo So, and Yuji Goto
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 289 Issue: 39 Pages: 27290-27299

    • DOI

      10.1074/jbc.m114.569814

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 超音波による蛋白質のアミロイド形成・結晶化の促進2014

    • Author(s)
      宗正智、八木寿梓、後藤祐児
    • Journal Title

      生物物理

      Volume: 6 Pages: 297-302

    • NAID

      130004713028

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Principal component analysis of chemical shift perturbation data of a multiple-ligand-binding system for elucidation of respective binding mechanism.2013

    • Author(s)
      Konuma, T., Lee, Y.-H., Goto, Y. & Sakurai, K.
    • Journal Title

      Proteins

      Volume: 81 Issue: 1 Pages: 107-118

    • DOI

      10.1002/prot.24166

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrasonication : An Efficient Agitation for Accelerating the Supersaturation- Limited Amyloid Fibrillation of Proteins2013

    • Author(s)
      Yuichi Yoshimura, Masatomo So, Hisashi Yagi, and Yuji Goto
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 52 Issue: 7S Pages: 07HA01-07HA01

    • DOI

      10.7567/jjap.52.07ha01

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Benzalkonium chloride accelerates the formation of the amyloid fibrils of corneal dystrophy-associated peptides.2013

    • Author(s)
      Kato, Y., Yagi, H., Kaji, Y., Oshika, T. and Goto, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Issue: 35 Pages: 25109-25118

    • DOI

      10.1074/jbc.m113.477695

    • NAID

      120006557640

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Acceleration of the depolymerization of amyloid  fibrils by ultrasonication.2013

    • Author(s)
      Yagi , H., Hasegawa , K., Yoshimura, Y. and Goto, Y.
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1834 Issue: 12 Pages: 2480-2485

    • DOI

      10.1016/j.bbapap.2013.08.013

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure, folding dynamics and amyloidogenesis of Asp76Asn β2-microglobulin: roles of shear flow, hydrophobic surfaces and α crystallin.2013

    • Author(s)
      Mangione PP, Esposito G, Relini A, Raimondi S, Porcari R, Giorgetti S, Corazza A, Fogolari F, Penco A, Goto Y, Lee YH, Yagi H, Cecconi C, Naqvi MM, Gillmore JD, Hawkins PN, Chiti F, Rolandi R, Taylor GW, Pepys MB, Stoppini M, Bellotti V.
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Issue: 43 Pages: 30917-30930

    • DOI

      10.1074/jbc.m113.498857

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The monomer-seed interaction mechanism in the formation of the β2-microglobulin amyloid fibril clarified by solution NMR techniques.2012

    • Author(s)
      Yanagi K
    • Journal Title

      J. Mol. Biol.

      Volume: 422 Issue: 3 Pages: 390-402

    • DOI

      10.1016/j.jmb.2012.05.034

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polymorphism 01 β^-microglobulin amyloid fibrils manifested by ultrasonication-enhanced fibril formation in t r i f luoroe t hanol.2012

    • Author(s)
      Chatani, E., et al. and Goto, Y.
    • Journal Title

      J. Biol. Chen.

      Volume: 287(27) Pages: 22827-22837

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distinguishing crystal-like amyloid fibrils and glass-like amorphous aggregates from their kinetics of formation2012

    • Author(s)
      Yoshimura Y
    • Journal Title

      Proc. Natl. Acad. Sci. U. S. A

      Volume: 109 Issue: 36 Pages: 14446-14451

    • DOI

      10.1073/pnas.1208228109

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] The role of supersaturation in amyloid fibrillation of proteins2014

    • Author(s)
      Yuji Goto
    • Organizer
      Chemistry Mini-Symposium, New York University Abu Dhabi
    • Place of Presentation
      Abu Dhabi, UAE
    • Year and Date
      2014-10-30
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Supersaturation-limited protein misfolding revealed by ultrasonication.2014

    • Author(s)
      Yuji Goto
    • Organizer
      15th International Union of Biochemistry and Molecular Biology
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2014-10-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 蛋白質のアミロイド線維形成における過飽和の役割2014

    • Author(s)
      後藤祐児、
    • Organizer
      アミロイドーシス研究会
    • Place of Presentation
      KKR東京
    • Year and Date
      2014-08-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Supersaturation-limited protein misfolding revealed by ultrasonication.2014

    • Author(s)
      Yuji Goto
    • Organizer
      2014 International Biophysics Congress,
    • Place of Presentation
      Brisbane, Australia
    • Year and Date
      2014-08-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Supersaturation-sealed protein misfolding revealed by ultrasonication.2014

    • Author(s)
      Yuji Goto
    • Organizer
      Joint Congress of ACTS-2014 and CGOM11
    • Place of Presentation
      奈良
    • Year and Date
      2014-06-17 – 2014-06-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 蛋白質のフォールディングとミスフォールディング2014

    • Author(s)
      後藤祐児
    • Organizer
      第19回産学高分子研究会
    • Place of Presentation
      大阪大学
    • Year and Date
      2014-06-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Toward a comprehensive understanding of protein folding and misfolding.2013

    • Author(s)
      後藤祐児
    • Organizer
      The Asian Pacific Prion Symposium
    • Place of Presentation
      ハウステンボス、長崎
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Toward a comprehensive understanding of protein folding and misfolding.2013

    • Author(s)
      後藤祐児
    • Organizer
      BioComplex-Taiwan
    • Place of Presentation
      National Taiwan University, Taipei
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Supersaturation-Sealed Protein Misfolding Funnels Revealed by Ultrasonication.2013

    • Author(s)
      後藤祐児
    • Organizer
      The 1st Awaji International Workshop on Electron Spin Science & Technology
    • Place of Presentation
      Awaji Yumebutai
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Toward understanding a unifying principle of protein folding and aberrant aggregation.2012

    • Author(s)
      Goto, Yuji
    • Organizer
      The 3rd Syiposim on Structure and Folding of Disease Related Proteins
    • Place of Presentation
      Seoul National University, Seoul, Korea
    • Year and Date
      2012-07-06
    • Related Report
      2012 Annual Research Report
  • [Presentation] 蛋白質のアミロイド線維形成

    • Author(s)
      後藤祐児
    • Organizer
      第117回日本眼科学会総会、基礎研究セミナー
    • Place of Presentation
      東京国際フォーラム
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 大阪大学蛋白質研究所、蛋白質構造形成研究室

    • URL

      http://www.protein.osaka-u.ac.jp/physical/yoeki.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪大学蛋白質研究所蛋白質構造形成研究室

    • URL

      http://www.protein.osaka-u.ac.jp/physical/yoeki.html

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/physical/voeki.html

    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] 過飽和析出物検出装置および過飽和析出物検出方法2012

    • Inventor(s)
      後藤祐児他
    • Industrial Property Rights Holder
      大阪大学、エレコン科学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2012-05-25
    • Acquisition Date
      2013-09-13
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi