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Analysis of cultivar- and tissue-specific biogenesis of viroid-specific small RNA in relation to viroid pathogenicity

Research Project

Project/Area Number 24380026
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Plant pathology
Research InstitutionHirosaki University

Principal Investigator

SANO Teruo  弘前大学, 農学生命科学部, 教授 (30142699)

Co-Investigator(Kenkyū-buntansha) HARADA Takeo  弘前大学, 農学生命科学部, 教授 (10228645)
TANEDA Akito  弘前大学, 理工学研究科, 准教授 (70332492)
Research Collaborator OWENS R.A.  USDA, Agriculture Research Service Molecular Plant Pathology Laboratory
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥19,110,000 (Direct Cost: ¥14,700,000、Indirect Cost: ¥4,410,000)
Fiscal Year 2014: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2013: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2012: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Keywordsウイロイド / ノンコーディングRNA / RNAサイレンシング / siRNAシークエンス / 抵抗性 / 病原性 / 非コードRNA / スモールRNA / ウイロイド抵抗性 / ウイロイド特異的スモールRNA / マイクロRNA / ヘアピンRNA
Outline of Final Research Achievements

Deep sequencing analysis of PSTVd-small RNA in leaf and stem of tomato infected with severe and mild PSTVd isolates revealed that PSTVd-small RNA was less abundant in leaf tissues than in stem, and in those infected with mild isolate than with severe. Reduction of PSTVd-small RNA in mild isolate was conspicuous especially in the regions containing the nucleotides 118, 126 and 201. Relative expression levels of some host microRNAs were down-regulated in PSTVd infected plants. Especially, miR159 decreased to nearly 50% and miR319 decreased to 33-63% of that of the healthy.
Transgenic N.benthamiana and tomato lines expressing varieties of hairpin RNAs were created, which included various PSTVd-derived sequences, tomato gibberellin-related gene, DCL2 gene and AGO2 gene. Four of the 21 lines of transgenic N.benthamiana expressing hairpin RNA of PSTVd-related sequences showed delay of the infection and reduction of PSTVd accumulation.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (38 results)

All 2015 2014 2013 2012 Other

All Journal Article (13 results) (of which Peer Reviewed: 11 results,  Acknowledgement Compliant: 3 results) Presentation (25 results) (of which Invited: 4 results)

  • [Journal Article] Changes in relative expression levels of viroid-specific small RNAs and microRNAs in tomato plants infected with severe and mild symptom-inducing isolates of Potato spindle tuber viroid2015

    • Author(s)
      Tsushima D, Adkar-Purushothama CR, Taneda A, Sano T
    • Journal Title

      Journal of General Plant Pathology

      Volume: 81 Pages: 49-62

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] First report of Dahlia latent viroid and Potato spindle tuber viroid mixed-infection in commercial ornamental dahlia in Japan2015

    • Author(s)
      Tsushima T, Matsushita Y, Fuji S, Sano T
    • Journal Title

      New Disease Report

      Volume: 31 Pages: 11-11

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Detection, Distribution, and Genetic Diversity of Australian grapevine viroid in Grapevines in India2014

    • Author(s)
      Adkar-Purushothama CR, Kanchepalli PR, Sreenivasa MY, Zhang Z-X, Sano T
    • Journal Title

      Virus Genes

      Volume: 49 Pages: 304-311

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Current status of viroid taxonomy2014

    • Author(s)
      Di Serio F., Flores R., Verhoeven JThJ., Li S-F., Pallas V, Randles JW, Sano T, Vidalakis G, Owens RA
    • Journal Title

      Archieves of Virolog

      Volume: 159 Pages: 3467-3478

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 近年の日本農業の脅威となる外来侵入植物ウイイルス・ウイロイド2014

    • Author(s)
      津田新哉・佐野輝男
    • Journal Title

      日本植物病理学会報

      Volume: 80 Pages: 134-142

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Chapter 12. Analysis and application of viroid-specific small RNAs generated by viroid-Inducing RNA silencing.2014

    • Author(s)
      Adkar-Purushothama C.J, Zhang Z-X, Li S-F, Sano T
    • Journal Title

      Methods in Molecular Biology

      Volume: 1236 Pages: 135-175

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Threats to Japanese agriculture from newly emerged plant viruses and viroids2014

    • Author(s)
      Tsuda S, Sano T
    • Journal Title

      Journal of General Plant Pathology

      Volume: 80 Pages: 2-14

    • NAID

      130004779387

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Natural infection of sweet cherry trees with Apple scar skin viroid2013

    • Author(s)
      Kaponi, MS, Sano T, Kyriakopoulou PE
    • Journal Title

      Journal of Plant Pathology

      Volume: 95 Pages: 429-433

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] First report of Grapevine yellow speckle viroid-1 and Hop stunt viroid infecting grapevines (Vitis vinifera) in India2013

    • Author(s)
      Sahana AB, Adkar-Purushothama CR, Chennappa G, Zhang Z-H, Sreenivasa MY, Sano T
    • Journal Title

      Plant Disease

      Volume: 97 Pages: 1517-1517

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] History, origin, and diversity of hop stunt disease and Hop stunt viroid2013

    • Author(s)
      Teruo Sano
    • Journal Title

      Acta Horticulurae

      Volume: 1010 Pages: 87-96

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Scion on a Stock Producing siRNAs of Potato Spindle Tuber Viroid (PSTvd) Attenuates Accumulation of the Viroid.2013

    • Author(s)
      Kasai A, Sano T, Harada T
    • Journal Title

      PLoS ONE

      Volume: 8

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive diversity analysis of viroids infecting grapevine in China and Japan2012

    • Author(s)
      Jiang D, Sano T, Tsuji M, Araki H, Sagawa K, 他6名
    • Journal Title

      Virus Research

      Volume: 169 Pages: 237-245

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] First Report of Coleus blumei viroid Infecting Coleus in India2012

    • Author(s)
      Adkar-Purushothama CR, Nagaraja H, Sreenivasa MY, Sano T
    • Journal Title

      Plant Disease

      Volume: 91 Pages: 149-149

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 国内で発生しているApple dimple viroid (ADFVd)の塩基配列と系統解析2015

    • Author(s)
      葛西鴻志・鈴木貴大・高橋諒大・山崎祐人・齊藤瑠衣・成田和子・藤林美里・佐野輝男
    • Organizer
      平成27年度日本植物病理学会大会
    • Place of Presentation
      東京都明治大学駿河台キャンパス
    • Year and Date
      2015-03-31
    • Related Report
      2014 Annual Research Report
  • [Presentation] 異なる分子内ループ構造を有するコリウスブルメイウイロイド1(CbVd-1)変異体の遺伝的安定性と種子伝染性の分析2015

    • Author(s)
      対馬太郎・佐野輝男
    • Organizer
      平成27年度日本植物病理学会大会
    • Place of Presentation
      東京都明治大学駿河台キャンパス
    • Year and Date
      2015-03-31
    • Related Report
      2014 Annual Research Report
  • [Presentation] ジャガイモやせいもウイロイド-ダリア株の可変及び右末端領域の塩基変異と病原性2015

    • Author(s)
      対馬大希・佐野輝男
    • Organizer
      平成27年度日本植物病理学会大会
    • Place of Presentation
      東京都明治大学駿河台キャンパス
    • Year and Date
      2015-03-31
    • Related Report
      2014 Annual Research Report
  • [Presentation] ウイロイド特異的スモールRNAを発現する形質転換ベンサミアーナタバコ2015

    • Author(s)
      菅原康平・Adkar-Purushothama Charith Raj・葛西厚史・山本英樹・山崎祐人・赫英紅・高田展之・後藤英樹・新堂さほり・原田竹雄・佐野輝男
    • Organizer
      平成27年度日本植物病理学会大会
    • Place of Presentation
      東京都明治大学駿河台キャンパス
    • Year and Date
      2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] 病原性の異なるジャガイモやせいもウロド感染トマト中のマイクロRNA発現量の変動分析2014

    • Author(s)
      対馬大希・Adkar-Purushothama Charith Raj・種田晃人・佐野輝男
    • Organizer
      平成26年度日本植物病理学会東北部会
    • Place of Presentation
      盛岡市アイーナホール
    • Year and Date
      2014-09-25 – 2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] コリウスブルメイウイロイドー1(CbVd-1)分子ループ構造変異体7種の生物学的特徴2014

    • Author(s)
      対馬太郎・佐野輝男
    • Organizer
      平成26年度日本植物病理学会東北部会
    • Place of Presentation
      盛岡市アイーナホール
    • Year and Date
      2014-09-25 – 2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] RNAiによるヘアピンPSTVd特異的スモールRNAを発現する形質転換トマトの作出2014

    • Author(s)
      菅原康平・葛西厚史・Adkar-Purushothama Charith Raj・赫英紅・後藤英樹・山本英樹・原田竹雄・佐野輝男
    • Organizer
      会平成26年度日本植物病理学会感染生理談話
    • Place of Presentation
      仙台市作並温泉鷹泉閣岩松旅館
    • Year and Date
      2014-08-06 – 2014-08-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 病原性の異なるジャガイモやせいもウロド感染トマト中のマイクロRNA発現量の変動分析2014

    • Author(s)
      対馬大希・Adkar-Purushothama Charith Raj・種田晃人・佐野輝男
    • Organizer
      平成26年度日本植物病理学会感染生理談話会
    • Place of Presentation
      仙台市作並温泉鷹泉閣岩松旅館
    • Year and Date
      2014-08-06 – 2014-08-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] Molecular characterization of attenuated Potato spindle tuber viroid strain from dahlia2014

    • Author(s)
      Tsushima D・Taneda A・Sano T
    • Organizer
      XIVth International Congress of Virology
    • Place of Presentation
      カナダ・モントリオール市
    • Year and Date
      2014-07-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] ジャガイモやせいもウイロイド-ダリア株の可変及び右末端領域に生じた3塩基変異の分析2014

    • Author(s)
      対馬大希・種田晃人・佐野輝男
    • Organizer
      平成26年度日本植物病理学会
    • Place of Presentation
      札幌市札幌コンベンションセンター
    • Year and Date
      2014-06-02
    • Related Report
      2014 Annual Research Report
  • [Presentation] アプスカウイロイド属ウイロイドの草本性植物に対する病原性解析2014

    • Author(s)
      藤林美里・赫英紅・畑谷達児・佐野輝男
    • Organizer
      平成26年度日本植物病理学会
    • Place of Presentation
      札幌市札幌コンベンションセンター
    • Year and Date
      2014-06-02
    • Related Report
      2014 Annual Research Report
  • [Presentation] ウイロイド特異的small RNAのウイロイド複製抑制効果の解析2013

    • Author(s)
      高田展之・Adkar-Purushothama Charith Raj・葛西厚・赫英紅・宍戸愛・原田竹雄・佐野輝男
    • Organizer
      平成25年度日本植物病理学会大会
    • Place of Presentation
      岐阜市・岐阜大学
    • Year and Date
      2013-03-29
    • Related Report
      2012 Annual Research Report
  • [Presentation] Current status of viroid disease epidemics in the world2013

    • Author(s)
      Teruo Sano
    • Organizer
      2013 Korean Society of Plant Pathology. International Conference
    • Place of Presentation
      Sunchon National University, Sunchon, Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Molecular and biological characterization of Potato spindle tuber viroid and Dahlia latent viroid in dahlia cultivated in Japan2013

    • Author(s)
      Tsushima T and Sano T
    • Organizer
      International Workshop on Viroids and Satellite RNAs (IWVdS)
    • Place of Presentation
      Beijing, CHina
    • Related Report
      2013 Annual Research Report
  • [Presentation] Characterization of Hop stunt viroid adaptation mutations emerged during persistent infection in hops2013

    • Author(s)
      Sano T, Zhang S-X, Taneda A, Matsuda T, Murosaki F, Li S-F, Owens RA
    • Organizer
      International Workshop on Viroids and Satellite RNAs (IWVdS)
    • Place of Presentation
      Beijing, China
    • Related Report
      2013 Annual Research Report
  • [Presentation] 日本のダリアから検出されたDahlia latent viroidの分子構造と生物学的特徴2013

    • Author(s)
      対馬太郎・佐野輝男・藤晋一・松下陽介
    • Organizer
      平成25年度日本植物病理学会東北部会
    • Place of Presentation
      秋田市にぎわい会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] ジャガイモやせいもウイロイドの全身蓄積量ならびに病原性と可変及び右末端領域の関連性2013

    • Author(s)
      対馬大希・伊藤寛次・佐野輝男
    • Organizer
      平成25年度日本植物病理学会東北部会
    • Place of Presentation
      秋田市にぎわい会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] ウイロイド(PSTvd)のsiRNA産生台木上の穂木におけるPSTVd増殖に対する抵抗性2012

    • Author(s)
      葛西厚・Adkar-Purushothama Charith Raj・佐野輝男・原田竹雄
    • Organizer
      平成24年度日本育種学会秋季大会
    • Place of Presentation
      京都市・国際会議場
    • Year and Date
      2012-09-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] ホップ矮化ウイロイドーブドウ及びホップ変異体の感染力とウイロイド特異的small RNA蓄積パターンの比較2012

    • Author(s)
      室崎文美子・張志想・Adkar-Purushothama Charith Raj・佐野輝男
    • Organizer
      平成24年度(第48回)日本植物病理学会東北部会
    • Place of Presentation
      山形県鶴岡市・山形大学農学部
    • Year and Date
      2012-09-13
    • Related Report
      2012 Annual Research Report
  • [Presentation] History, origin, diversity of hop stunt and hop stunt viroid2012

    • Author(s)
      Sano T
    • Organizer
      IIIrd International Humulus Symposium
    • Place of Presentation
      チェコ共和国・ジャテッツ市(招待講演)
    • Year and Date
      2012-09-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] Evaluation of RNAi-mediated resistance offered to Potato spindle tuber viroid in transgenic N. benthamiana plants expressing different hairpin RNA constructs2012

    • Author(s)
      Adkar-Purushothama CR, Kasai A, Harada T, Sano T
    • Organizer
      XVth International Congress of Molecular Plant-Microbe Interaction
    • Place of Presentation
      京都市・国際会議場
    • Year and Date
      2012-07-30
    • Related Report
      2012 Annual Research Report
  • [Presentation] Pathogenicity and replication competence of PSTVd-like specific deletion molecule and unknown circular RNA molecule, detected from dahlia in Japan2012

    • Author(s)
      Tsushima T, Sano T
    • Organizer
      XVth International Congress of Molecular Plant-Microbe Interaction
    • Place of Presentation
      京都市・国際会議場
    • Year and Date
      2012-07-30
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of viroid-specific small RNAs in relation to viroid pathogenicity

    • Author(s)
      Teruo Sano
    • Organizer
      Korean Society of Plant Pathology, The 22nd Annual Meeting and Symposium on Plant Virus Diseases
    • Place of Presentation
      Sunchon National University, Sunchon, Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Molecular ecology of viroids and viroid diseases of crop plants

    • Author(s)
      Teruo Sano
    • Organizer
      Special lecture in Botanical Society, University of Mysore (Department of Studies Botany)
    • Place of Presentation
      Mysore University, Mysore, India
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ウイルス病害を中心としたリンゴ病害の診断・防除」について

    • Author(s)
      佐野輝男
    • Organizer
      JAつがる弘前目屋支店りんご部会学習会
    • Place of Presentation
      青森県、東目屋ふれあいセンター
    • Related Report
      2013 Annual Research Report
    • Invited

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Published: 2012-04-24   Modified: 2019-07-29  

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