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Development of PNA-based chromatography for rapid detection of respiratory viruses

Research Project

Project/Area Number 24390146
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Laboratory medicine
Research InstitutionKyoto Prefectural University of Medicine

Principal Investigator

NAKAYA TAKAAKI  京都府立医科大学, 医学(系)研究科(研究院), 教授 (80271633)

Co-Investigator(Kenkyū-buntansha) KAIHATSU Kunihiro  大阪大学, 産業科学研究所, 特任准教授 (70419464)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥18,720,000 (Direct Cost: ¥14,400,000、Indirect Cost: ¥4,320,000)
Fiscal Year 2014: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2012: ¥7,930,000 (Direct Cost: ¥6,100,000、Indirect Cost: ¥1,830,000)
Keywords迅速診断 / デバイス / インフルエンザウイルス / ペプチド核酸 / ウイルス検出 / マイクロ流体システム / ウイルス / クロマトデバイス / オンチップ / 感染症
Outline of Final Research Achievements

In this study, we developed a novel chromatography kit for the subtype-specific detection of influenza A viruses. Azobenzene-tethered hairpin-type peptide nucleic acid (Tail-clamp PNA-AZO) possessing a subtype-specific complementary sequence against human influenza A virus, H1-, H3-, and avian H7-subtype, was synthesized and attached to a chromatography strip. The sensitivity of the chromatography was approximately 1.0×104 ffu/kit for H1N1 and H3N2, and 5.0×105 ffu/kit for H7N7, respectively. The PNA-chromatography specifically detected each influenza A virus tested, although it slightly reacted with other subtypes.
Even though further improvement is necessary to use it clinically as a rapid diagnostic kit, this system could be applied for the sequence-specific detection of influenza viruses, including drug-resistant viruses as well as highly-pathogenic avian influenza viruses.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (18 results)

All 2015 2014 2013 2012

All Journal Article (11 results) (of which Peer Reviewed: 10 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (6 results) (of which Invited: 2 results) Book (1 results)

  • [Journal Article] Characterization of H5N1 Influenza Virus Variants with Hemagglutinin Mutations Isolated from Patients.2015

    • Author(s)
      1.Watanabe Y, Arai Y, Daidoji T, Kawashita N, Ibrahim MS, El-Gendy E, Hiramatsu H, Kubota-Kokestu R, Takagi T, Murata T, Takahashi K, Okuno Y, Nakaya T, Suzuki Y, Ikuta K.
    • Journal Title

      mBio

      Volume: 6 Issue: 2

    • DOI

      10.1128/mbio.00081-15

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Emergence of infectious malignant thrombocytopenia in Japanese macaques (Macaca fuscata) by SRV-4 after transmission to a novel host.2015

    • Author(s)
      Okamoto M, Miyazawa T, Morikawa S, Ono F, Nakamura S, Sato E, Yoshida T, Yoshikawa R, Sakai K, Mizutani T, Nagata N, Takano J, Okabayashi S, Hamano M, Fujimoto K, Nakaya T, Iida T, Horri T, Miyabe-Nishiwaki T, Watanabe A, Kaneko A, Saito A, Matsui A, Hayakawa T, Suzuki J, Akari H, Matsuzawa T, Hirai H.
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 8850-8850

    • DOI

      10.1038/srep08850

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Avian Influenza Virus Infection of Immortalized Human Respiratory Epithelial Cells Depends upon a Delicate Balance between Hemagglutinin Acid Stability and Endosomal pH.2015

    • Author(s)
      3.Daidoji T, Watanabe Y, Ibrahim MS, Yasugi M, Maruyama H, Masuda T, Arai F, Ohba T, Honda A, Ikuta K, Nakaya T
    • Journal Title

      J Biol Chem

      Volume: 290 Issue: 17 Pages: 10627-42

    • DOI

      10.1074/jbc.m114.611327

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Viral detection by high-throughput sequencing2015

    • Author(s)
      4.Motooka D, Nakamura S, Hagiwara K, Nakaya T
    • Journal Title

      Methods Mol Biol

      Volume: 1236 Pages: 125-34

    • DOI

      10.1007/978-1-4939-1743-3_11

    • ISBN
      9781493917426, 9781493917433
    • Related Report
      2014 Annual Research Report
  • [Journal Article] A novel immunochromatographic system for easy-to-use detection of group 1 avian influenza viruses with acquired human-type receptor binding specificity2014

    • Author(s)
      Watanabe Y, Ito T, Ibrahim MS, Arai Y, Hotta K, Phuong HVM, Hang NLK Mai LQ, Soda K, Yamaoka M, Poetranto ED, Wulandari L, Hiramatsu H, Daidoji T, Kubota-Koketsu R, Sriwilaijaroen N, Nakaya T, Okuno Y, Takahashi T, Suzuki T, Ito T, Hotta H, Yamashiro T, Hayashi T, Morita K, Ikuta K, Suzuki Y
    • Journal Title

      Biosens Bioelectron

      Volume: 65 Pages: 211-219

    • DOI

      10.1016/j.bios.2014.10.036

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Virus purification and enrichment by hydroxyapatite chromatography on a chip.2014

    • Author(s)
      6.Niimi M, Masuda T, Kaihatsu K, Kato N, Nakamura S, Nakaya T, Arai F.
    • Journal Title

      Sensors and Actuators B: Chemical

      Volume: 201 Pages: 185-90

    • DOI

      10.1016/j.snb.2014.04.011

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human monoclonal antibodies derived from a patient infected with 2009 pandemic influenza A virus broadly cross-neutralize group 1 influenza viruses2014

    • Author(s)
      Pan Y, Sasaki T, Kubota-Koketsu R, Inoue Y, Yasugi M, Yamashita A, Ramadhany R, Arai Y, Du A, Boonsathorn N, Ibrahim MS, Daidoji T, Nakaya T, Ono K, Okuno Y, Ikuta K, Watanabe Y
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 450 Issue: 1 Pages: 42-48

    • DOI

      10.1016/j.bbrc.2014.05.060

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Sequence-specific and visual identification of influenza virus gene by azobenzene-tethered bis-peptide nucleic acid2013

    • Author(s)
      K. Kaihatsu, S. Sawada, S. Nakamura, T. Nakaya, T. Yasunaga, N. Kato
    • Journal Title

      PLoS ONE

      Volume: 8 Issue: 5 Pages: e64017-e64017

    • DOI

      10.1371/journal.pone.0064017

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human monoclonal antibodies broadly neutralizing against influenza B virus.2013

    • Author(s)
      Yasugi, M., Kubota-Koketsu, R., Yamashita, A., Kawashita, N., Du, A., Sasaki, T., Nishimura, M., Misaki, R., Kuhara, M., Boonsathorn, N., Fujiyama, K., Okuno, Y., Nakaya, T., and Ikuta, K.
    • Journal Title

      PLoS Pathog.

      Volume: 9 Issue: 2 Pages: e1003150-e1003150

    • DOI

      10.1371/journal.ppat.1003150

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of HA mutants during influenza virus pneumonia.2012

    • Author(s)
      Manriquez ME, Nakaya T, Shinya K, et al.
    • Journal Title

      Int. J. Clin. Exp. Pathol.

      Volume: 5(8) Pages: 787-795

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Antigenic analysis of highly pathogenic avian influenza virus H5N1 sublineage co-circulating in Egypt.2012

    • Author(s)
      Watanabe, Y., Ibrahim, M.S., Ellakany, H.F., Kawashita, N., Daidoji, T., Takagi, T., Yasunaga, T., Nakaya, T., and Ikuta, K.
    • Journal Title

      J. Gen. Virol.

      Volume: 93 Issue: 10 Pages: 2215-2226

    • DOI

      10.1099/vir.0.044032-0

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 環境中微生物の網羅的探索(メタゲノム解析)2015

    • Author(s)
      中屋 隆明
    • Organizer
      第2回大気エアロゾルシンポジウム
    • Place of Presentation
      北海道江別市
    • Year and Date
      2015-02-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] しのび寄る新興感染症における最新の話題2014

    • Author(s)
      中屋 隆明
    • Organizer
      第20回京都地域医療フォーラム
    • Place of Presentation
      京都市
    • Year and Date
      2014-09-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 鳥インフルエンザ2012

    • Author(s)
      中屋 隆明
    • Organizer
      日本神経感染症学会
    • Place of Presentation
      京都府京都市
    • Year and Date
      2012-10-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] インフルエンザウイルスの宿主域拡大戦略2012

    • Author(s)
      中屋 隆明
    • Organizer
      CREST公開シンポジウム「光が拓く細胞解析の新展開」
    • Place of Presentation
      東京都品川区
    • Year and Date
      2012-08-18
    • Related Report
      2012 Annual Research Report
  • [Presentation] 新興・再興ウイルス感染症のダイナミクス2012

    • Author(s)
      中屋 隆明
    • Organizer
      びわ湖国際医療フォーラム
    • Place of Presentation
      滋賀県大津市
    • Year and Date
      2012-07-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] H1N1 2009-HAゲノムのディープシークエンス解析2012

    • Author(s)
      中屋 隆明
    • Organizer
      インフルエンザ研究者交流の会シンポジウム
    • Place of Presentation
      福島県耶麻郡
    • Year and Date
      2012-05-25
    • Related Report
      2012 Annual Research Report
  • [Book] 次世代シーケンサー活用術2015

    • Author(s)
      中村昇太、飯田哲也・中屋隆明・堀井俊宏
    • Total Pages
      199
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

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