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A study on the prediction of the recurrence of hepatocellular carcinoma (HCC) by a novel Boolean classifier with use of the combination of genomic data and clinical data

Research Project

Project/Area Number 24500206
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Perception information processing/Intelligent robotics
Research InstitutionYamaguchi University

Principal Investigator

HAMAMOTO YOSHIHIKO  山口大学, 医学(系)研究科(研究院), 教授 (90198820)

Co-Investigator(Kenkyū-buntansha) IIZUKA Norio  山口大学, 医学部付属病院, 准教授 (80332807)
FUJITA Yusuke  山口大学, 大学院医学系研究科, 准教授 (40509527)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords癌 / パターン認識 / 診断
Outline of Final Research Achievements

The purpose of this study is to develop a novel blood test system for predicting the recurrence of hepatocellular carcinoma (HCC) associated with hepatitics C virus (HCV) infection. In order to develop the test system, we established the combination of genomic data and clinical data, and the design of a novel Boolean classifier for binary patterns. We used 40 training samples and 33 test samples, who underwent complete surgical resection of HCC. Regarding features used for a classifier, 2 methylated genes (SPINT2 and SRD5A2), traditional tumor maker AFP and PIVKA were used. We developed the blood test system with use of the Boolean classifier for predicting the recurrence of HCC, which achieved high abilities (sensitivity of 64%, specificity of 65% and Youden-index of 0.29) for 33 test samples. This suggests that the proposed method might lead to clinical applications.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (7 results)

All 2015 2014 2013

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (4 results) (of which Invited: 1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] An accurate prognostic staging system for hepatocellular carcinoma patients after curative hepatectomy2015

    • Author(s)
      Y. Tokumitsu
    • Journal Title

      International Journal of Oncology

      Volume: 46 Issue: 3 Pages: 944-952

    • DOI

      10.3892/ijo.2014.2798

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Comparative Study of Classifiers for Prediction of Recurrence of Liver Cancer Using Binary Patterns2014

    • Author(s)
      荻原 宏是
    • Organizer
      27th International Conference on Industrial, Engineering & Other Applications of Applied Intelligent Systems
    • Place of Presentation
      Kaohsiung, Taiwan
    • Related Report
      2013 Research-status Report
  • [Presentation] Classification Based on Boolean Algebra and Its Application to the Prediction of Recurrence of Liver Cancer2013

    • Author(s)
      荻原 宏是
    • Organizer
      Workshop on Recent Advances in Computer Vision and Pattern Recognition
    • Place of Presentation
      ロワジールホテル那覇(那覇市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 統計的パターン認識による肝癌再発予測2013

    • Author(s)
      浜本 義彦
    • Organizer
      第28回信号処理シンポジウム
    • Place of Presentation
      海峡メッセ下関(下関市)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] ブール代数に基づく識別とその肝癌診断への応用2013

    • Author(s)
      荻原宏是
    • Organizer
      情報処理学会第75回全国大会
    • Place of Presentation
      東北大学
    • Related Report
      2012 Research-status Report
  • [Patent(Industrial Property Rights)] 情報処理装置と情報処理プログラム並びに情報処理方法2014

    • Inventor(s)
      浜本義彦,飯塚徳男
    • Industrial Property Rights Holder
      国立大学法人 山口大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-147690
    • Filing Date
      2014-07-18
    • Related Report
      2014 Annual Research Report
  • [Patent(Industrial Property Rights)] 情報処理装置と情報処理プログラム並びに情報処理方法2014

    • Inventor(s)
      浜本義彦,飯塚徳男
    • Industrial Property Rights Holder
      国立大学法人 山口大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-07-18
    • Acquisition Date
      2014-12-26
    • Related Report
      2014 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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