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Analyses for functional differentiation between chemokine receptors, viral receptors, and decoy receptors

Research Project

Project/Area Number 24500362
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionOsaka University

Principal Investigator

DAIYASU Hiromi  大阪大学, 情報科学研究科, 特任研究員 (40362397)

Co-Investigator(Kenkyū-buntansha) TOH Hiroyuki  独立行政法人産業技術総合研究所, ゲノム情報研究センター, 副研究センター長 (70192656)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2014: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsケモカイン受容体 / ウイルス由来受容体 / シグナル伝達 / 機能分化 / 分子進化
Outline of Final Research Achievements

Chemokine receptors (CKRs), which are involved in homeostasis, inflammation, and immune response, constitute a subfamily of the G protein-coupled receptors. Both decoy and viral receptors are the homologs of CKRs, but their functions are different not only from those of the typical CKRs, but also from each other. To identify the changes which have induced the functional differentiation of the CKR homologs during the molecular evolution, we compared the three groups with bioinformatics methods.
From amino acid or nucleotide sequence comparisons and model structure buildings, we found that the several sites, which might be involved in the ligand binding and/or the signal transduction in the CKRs, had changed in each group. The results of our analyses would be expected to the modification of GPCR functions and the drug development.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (8 results)

All 2015 2014 2012 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (6 results) (of which Invited: 1 results)

  • [Journal Article] Computational prediction and experimental characterization of a "size switch type repacking" during the evolution of dengue envelope protein domain III (ED3)2014

    • Author(s)
      Elahi M, Islam MM, Noguchi K, Yohda M, Toh H, Kuroda Y.
    • Journal Title

      Biochim Biophys Acta

      Volume: 1844 Issue: 3 Pages: 585-592

    • DOI

      10.1016/j.bbapap.2013.12.013

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Evolutionary analysis of functional divergence among chemokine receptors, decoy receptors, and viral receptors.2012

    • Author(s)
      Daiyasu H, Nemoto W, Toh H.
    • Journal Title

      Front. Microbiol.

      Volume: 3

    • DOI

      10.3389/fmicb.2012.00264

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] ケモカイン受容体ファミリーにおける選択圧の変化2015

    • Author(s)
      大安 裕美、藤 博幸
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島市)
    • Year and Date
      2015-06-24 – 2015-06-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Detection of Positive Selection for Viral and Decoy Receptors2014

    • Author(s)
      大安 裕美、藤 博幸
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2014-11-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Evolutionary analysis of domesticated genes derived from LTR retroelements

    • Author(s)
      大安 裕美、 藤 博幸
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
  • [Presentation] Change of the functional constraints associated with the functional differentiation of the chemokine receptor family.

    • Author(s)
      藤博幸、根本航、大安裕美
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Research-status Report
  • [Presentation] Computational analysis of the functional sites of chemokine receptors.

    • Author(s)
      藤博幸、根本航、大安裕美
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知)
    • Related Report
      2012 Research-status Report
  • [Presentation] Computational analysis of functional divergence of chemokine receptors.

    • Author(s)
      Toh H.
    • Organizer
      Conference on Computational and Systems Biology
    • Place of Presentation
      Sanya, China
    • Related Report
      2012 Research-status Report
    • Invited

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Published: 2013-05-31   Modified: 2019-07-29  

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