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Analysis of chromosome conformation and breakpoints of balanced translocations in human

Research Project

Project/Area Number 24501307
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Carcinogenesis
Research InstitutionFujita Health University

Principal Investigator

INAGAKI Hidehito  藤田保健衛生大学, 総合医科学研究所, 講師 (70308849)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsDNA secondary structure / Translocation / Chromosome conformation / DNA高次構造 / 染色体転座 / ポジショナルエフェクト / 国際情報交換 / アメリカ
Outline of Final Research Achievements

Chromosomal translocations are mediated by illegitimate joining between distal parts of the different chromosomes. But the mechanism of proximity of these ends remains unknown which should have been repaired precisely. In this study, I used a palindromic sequence that induces frequent (1/20,000) de novo translocation in sperm from healthy men, and analyzed the interaction of these specific sequences that form DNA secondary structures in vivo. I found that the secondary structures were cleaved by two endogenous DNA repair enzymes, that the other DNA secondary structure also influences the chromosome metabolisms. Because of the difficulty of the DNA secondary structure, the chromosome conformation analysis remains a future subject.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (20 results)

All 2014 2013 2012 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (10 results) Remarks (5 results)

  • [Journal Article] Breakpoint analysis of the recurrent constitutional t(8;22)(q24.13;q11.21) translocation2014

    • Author(s)
      Mishra D, Kato T, Inagaki H, Kosho T, Wakui K, Kido Y, Sakazume S, Taniguchi-Ikeda M, Morisada N, Iijima K, Fukushima Y, Emanuel BS, Kurahashi H
    • Journal Title

      Mol Cytogenet

      Volume: 7 Issue: 1 Pages: 55-55

    • DOI

      10.1186/s13039-014-0055-x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Signature of backward replication slippage at the copy number variation junction.2014

    • Author(s)
      Ohye T, Inagaki H, Ozaki M, Ikeda T, Kurahashi H
    • Journal Title

      J Hum Genet

      Volume: in press Issue: 5 Pages: 247-250

    • DOI

      10.1038/jhg.2014.20

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Contribution of fetal genotype of promoter polymorphisms in ANXA5gene to the onset of pre-eclampsia2013

    • Author(s)
      Ota S,Miyamura H, Nishizawa H, Inagaki H, Inagaki A,Inuzuka H, SuzukiM, Miyazaki J, Sekiya T, Udagawa Y, Kurahashi H
    • Journal Title

      Placenta

      Volume: 34 Issue: 12 Pages: 1202-1210

    • DOI

      10.1016/j.placenta.2013.09.010

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Two sequential cleavage reactions on cruciform DNA structures cause palindrome-mediated chromosomal translocations2013

    • Author(s)
      Inagaki H, Ohye T, Kogo H, Tsutsumi M, Kato T, Tong M, Emanuel BS, Kurahashi H
    • Journal Title

      Nat Commun

      Volume: 4 Issue: 1 Pages: 1592-1592

    • DOI

      10.1038/ncomms2595

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification of an enhancer region for immune activation in the human GTP cyclohydrolase I gene.2013

    • Author(s)
      Liang Y, Inagaki H, Hao Q, Sakamoto M, Ohye T, Suzuki T, Ichinose H.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 442 Issue: 1-2 Pages: 72-78

    • DOI

      10.1016/j.bbrc.2013.11.002

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Detection of in vivo G-quadruplex structure of the ANXA5 promoter that contributes to the recurrent pregnancy loss2014

    • Author(s)
      H. Inagaki1, S. Ota1, H. Nishizawa2, H. Miyamura1,2, K. Nakahira3, M. Suzuki1, M. Tsutsumi1, T. Kato1, S. Nishiyama2, Y. Udagawa2, I. Yanagihara3, H. Kurahashi
    • Organizer
      The American Society of Human Genetics
    • Place of Presentation
      San Diego (USA)
    • Year and Date
      2014-10-18 – 2014-10-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] 生体内でのDNA高次構造形成の探索2014

    • Author(s)
      稲垣秀人、加藤武馬、大内雄矢、西澤春紀、倉橋浩樹
    • Organizer
      ゲノム支援2014拡大班会議
    • Place of Presentation
      神戸ポートピアホテル (神戸市)
    • Year and Date
      2014-08-20 – 2014-08-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] Obstetric complication-associated ANXA5 promoter polymorphisms affect gene expression via G-quadruplex structure in vivo2014

    • Author(s)
      H. Inagaki, S. Ota, H. Nishizawa, H. Miyamura, K. Nakahira, M. Suzuki, M. Tsutsumi, T. Kato, S. Nishiyama, Y. Udagawa, I. Yanagihara, H. Kurahashi
    • Organizer
      FASEB Summer Reseach Conference
    • Place of Presentation
      Itasca (USA)
    • Year and Date
      2014-07-20 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] パリンドロームを介した染色体転座の発生メカニズムの解明.2013

    • Author(s)
      稲垣秀人、加藤武馬、倉橋浩樹.
    • Organizer
      新学術領域「ゲノム支援」2013年度 拡大班会議
    • Place of Presentation
      神戸市
    • Related Report
      2013 Research-status Report
  • [Presentation] Bisulfite法を用いたプロモータ部位のグアニン四重鎖DNA構造の解析.2013

    • Author(s)
      稲垣秀人、太田小百合、宮村浩徳、大江瑞恵、堤真紀子、加藤武馬、西澤春紀、倉橋浩樹.
    • Organizer
      日本人類遺伝学会第58回大会
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report
  • [Presentation] ゲノム中に存在するDNA高次構造と疾患:習慣流産の例.2013

    • Author(s)
      稲垣秀人、太田小百合、宮村浩徳、大江瑞恵、堤真紀子、加藤武馬、西澤春紀、倉橋浩樹.
    • Organizer
      第22回 DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report
  • [Presentation] DNA Quadruplex structure at promoter region analyzed by bisulfite method.2013

    • Author(s)
      稲垣秀人、太田小百合、宮村浩徳、大江瑞恵、堤真紀子、加藤武馬、西澤春紀、倉橋浩樹.
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸市
    • Related Report
      2013 Research-status Report
  • [Presentation] Mechanism of recurrent translocation t(11;22) initiated by cruciform conformation of palindromes2012

    • Author(s)
      Inagaki H, Ohye T, Kogo H, Tsutsumi M, Kato T, Tong M, Emanuel BS, Kurahashi H
    • Organizer
      FASEB Science Research Conference
    • Place of Presentation
      アメリカ・サクストンズリバー
    • Related Report
      2012 Research-status Report
  • [Presentation] Obstetric complication-associated ANXA5 promoter polymorphisms affect gene expression via DNA secondary structures2012

    • Author(s)
      Inagaki H, Ota S, Nishizawa H, Miyamura H, Nakahira K, Suzuki M, Nishiyama S, Udagawa Y, Yanagihara I, Kurahashi H
    • Organizer
      American Society of Human Genetics 62nd Annual Meeting
    • Place of Presentation
      アメリカ・サンフランシスコ
    • Related Report
      2012 Research-status Report
  • [Presentation] 妊娠合併症に関連したANXA5プロモーター多型はDNA高次構造を介して発現量に影響する2012

    • Author(s)
      稲垣秀人、太田小百合、宮村浩徳、西澤春紀、中平久美子、柳原格、宇田川康博、倉橋浩樹
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡市
    • Related Report
      2012 Research-status Report
  • [Remarks] 藤田保健衛生大学 総合医科学研究所 分子遺伝学研究部門

    • URL

      http://www.fujita-hu.ac.jp/~genome/mg/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 分子遺伝学研究部門 トピックス

    • URL

      http://www.fujita-hu.ac.jp/~genome/mg/

    • Related Report
      2013 Research-status Report
  • [Remarks] 「染色体転座のしくみを解明」  ~がんや不妊・習慣流産の発生機序の解明に期待~

    • URL

      http://www.fujita-hu.ac.jp/ICMS/

    • Related Report
      2012 Research-status Report
  • [Remarks] 中日新聞

    • URL

      http://www.fujita-hu.ac.jp/~genome/mg/np/chunichi130313.jpg

    • Related Report
      2012 Research-status Report
  • [Remarks] 朝日新聞

    • URL

      http://www.fujita-hu.ac.jp/~genome/mg/np/asahi130313.jpg

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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