• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Biochemical and dynamic structural analysis of translesion DNA polymerase

Research Project

Project/Area Number 24510066
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionNagasaki University (2014)
Kumamoto University (2013)
Chiba University (2012)

Principal Investigator

KARATA Kiyonobu  長崎大学, 原爆後障害医療研究所, 産学官連携研究員 (90345017)

Co-Investigator(Renkei-kenkyūsha) OGURA Teru  熊本大学, 発生医学研究所, 教授 (00158825)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
KeywordsDNA複製 / 損傷乗り越え / 突然変異 / DNAポリメラーゼV / リボヌクレオチド
Outline of Final Research Achievements

DNA polymerase V is responsible for most mutations that arise from DNA damages in E. coli. We found that Pol V can incorporate ribonucleotide as well as deoxyribonucleotide and proposed a new model referred to as “ribonucleotide excision repair (RER)”. In the model, a part of Pol V-synthesized strand is resynthesized by error-free DNA polymerase utilizing ribonucleotide-deoxyribonucleotide hybrid region and it leads to a reduction of mutation frequency. We also found that RecA bound to UmuC, Pol V’s catalytic subunit, in 2 different regions. One was for active Pol V, and the other was for inactive Pol V.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (9 results)

All 2015 2014 2013 2012

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 1 results) Presentation (5 results)

  • [Journal Article] A RecA Protein Surface Required for Activation of DNA Polymerase V.2015

    • Author(s)
      Gruber AJ, Erdem AL, Sabat G, Karata K, Jaszczur MM, Vo DD, Olsen TM, Woodgate R, Goodman MF, Cox MM.
    • Journal Title

      PLoS Genet.

      Volume: 11(3) Issue: 3 Pages: e1005066-e1005066

    • DOI

      10.1371/journal.pgen.1005066

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity.2012

    • Author(s)
      Vaisman A
    • Journal Title

      Nucleic Acids Res

      Volume: 40(13) Issue: 13 Pages: 61446157-61446157

    • DOI

      10.1093/nar/gks233

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Escherichia coli UmuC active site mutants: Effects on translesion DNA synthesis, mutagenesis and cell survival.2012

    • Author(s)
      Kuban W
    • Journal Title

      DNA Repair (Amst)

      Volume: 11(9) Issue: 9 Pages: 726732-726732

    • DOI

      10.1016/j.dnarep.2012.06.005

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A strategy for the expression of recombinant proteins traditionally hard to purify.2012

    • Author(s)
      Frank EG
    • Journal Title

      Anal Biochem

      Volume: 429(2) Issue: 2 Pages: 132139-132139

    • DOI

      10.1016/j.ab.2012.07.016

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Clamp loading by Gamma complex2014

    • Author(s)
      Kiyonobu Karata
    • Organizer
      IMEG seminars & Minisymposium
    • Place of Presentation
      Kumamoto University (Kumamoto)
    • Related Report
      2013 Research-status Report
  • [Presentation] 大腸菌DNAポリメラーゼVによるリボヌクレオチドの取り込み2013

    • Author(s)
      唐田清伸
    • Organizer
      第86回日本細菌学会総会
    • Place of Presentation
      幕張
    • Related Report
      2012 Research-status Report
  • [Presentation] In vitro analysis of DNA polymerase V2012

    • Author(s)
      Karata K
    • Organizer
      Gordon Research Conference : Mutagenesis
    • Place of Presentation
      Newport, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] 大腸菌DNAポリメラーゼVのDNA合成後修復2012

    • Author(s)
      唐田清伸
    • Organizer
      国立遺伝学研究所研究集会「遺伝情報の安定性を支えるメカニズム」
    • Place of Presentation
      三島
    • Related Report
      2012 Research-status Report
  • [Presentation] 大腸菌DNAポリメラーゼVによるリボヌクレオチドの取り込み2012

    • Author(s)
      唐田清伸
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi