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Structural analysis of the binding mechanism of the Ku protein to DNA that contains overhangs in its end

Research Project

Project/Area Number 24510078
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

FUJIMOTO HIROFUMI  国立感染症研究所, その他部局等, 研究員 (60373396)

Co-Investigator(Kenkyū-buntansha) KOIKE Manabu  独立行政法人放射線医学総合研究所, 放射線障害研究グループ, 主任研究員 (70280740)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsDNA損傷修復 / DNA二本鎖切断 / Ku / 分子シミュレーション / ライブセルイメージング / DNA損傷認識 / 損傷修復 / 損傷認識
Outline of Final Research Achievements

The binding mechanism of the repair enzyme, Ku, to DNA that has overhangs in its 5’- or 3’- end was examined by both computational and experimental techniques. Comparing with the interaction between Ku and DNA with blunt ends, no significant differences were observed in the binding energy between Ku and DNA, but an amino acid residue of Ku that would interact with the terminal region with single-stranded DNA was identified. In addition, we established the system to examine the dynamics of Ku70 and Ku80, subunits of Ku protein, in the nucleus of cultured cells using the live cell imaging method, and succeeded in observing the accumulation of Ku70 or Ku80 at DNA damage sites produced by laser-microirradiation.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (6 results)

All 2015 2014 2013 2012

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (3 results)

  • [Journal Article] Nuclear localization of mouse Ku70 in interphase cells and focus formation of mouse Ku70 at DNA damage sites immediately after irradiation2015

    • Author(s)
      Koike M, Yutoku Y, Koike A.
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 77 Issue: 9 Pages: 1137-1142

    • DOI

      10.1292/jvms.14-0651

    • NAID

      130005100717

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Impact of Amino Acid Substitutions in Two Functional Domains of Ku80: DNA-Damage-Sensing Ability of Ku80 and Survival after Irradiation2014

    • Author(s)
      Koike M, Yutoku Y, Koike A.
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 76 Issue: 1 Pages: 51-56

    • DOI

      10.1292/jvms.13-0283

    • NAID

      130003362299

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The Defect of Ku70 Affects Sensitivity to X-Ray and Radiation-Induced Caspase-Dependent Apoptosis in Lung Cells2013

    • Author(s)
      Koike M, Yutoku Y, Koike A.
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 75 Issue: 4 Pages: 415-420

    • DOI

      10.1292/jvms.12-0333

    • NAID

      130002502180

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] ヒトのDNA 修復蛋白質が損傷DNA を修復するために損傷部に集積する様子のライブセルイメージング-患者由来のXLF遺伝子変異の影響̶-2014

    • Author(s)
      小池 学、湯徳 靖友、小池 亜紀
    • Organizer
      第51回アイソトープ・放射線研究発表会
    • Place of Presentation
      東京
    • Year and Date
      2014-07-07 – 2014-07-09
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒトのDNA修復蛋白質が損傷DNAを修復するために損傷部に集積する様子のライブセル イメージング-たった 1 つの遺伝子変異の影響-2013

    • Author(s)
      小池 学、湯徳靖友、小池亜紀
    • Organizer
      第50回 アイソトープ・放射線研究発表会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
  • [Presentation] ヒトDNA修復蛋白質が損傷DNAを修復するために損傷部に集積する様子の可視化2012

    • Author(s)
      小池 学、湯徳 靖友、小池 亜紀
    • Organizer
      第49回アイソトープ・放射線研究発表会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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