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Assessing the clinical utility of the genetic information using the genotype data for GWAS-derived type 2 diabetes susceptibility variants in a Japanese population.

Research Project

Project/Area Number 24510276
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Medical genome science
Research InstitutionUniversity of Toyama

Principal Investigator

IWATA MINORU  富山大学, 大学院医学薬学研究部(医学), 准教授 (20345565)

Co-Investigator(Kenkyū-buntansha) TOBE Kazuyuki  富山大学, 大学院医学薬学研究部(医学), 教授 (30251242)
Research Collaborator HARA Kazuo  東京大学, 医学部附属病院糖尿病・代謝内科 (50359600)
MAEDA Shiro  琉球大学大学院医学研究科, 先進ゲノム検査査医学講座・独立行政法人理化学研究所遺伝子多型研究センター (50314159)
KAMURA Yutaka  
NAKAGAWA Hajime  
TAKANO Atsuko  
KATO Hiromi  
TEMARU Rie  
FUKUSHIMA Yasuo  
HIGUCHI Kiyohiro  
TAKI Kazuko  
IGARASHI Yasuhumi  
SAWASAKI Shigeki  
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords疾患関連遺伝子 / ゲノム
Outline of Final Research Achievements

We evaluated the clinical usefulness of a genetic risk score (GRS) based on 14 well-established variants for type 2 diabetes(T2D). We analyzed 14 SNPs at HHEX, CDKAL1, CDKN2B, SLC30A8, KCNJ11, IGF2BP2, PPARG, TCF7L2, FTO, KCNQ1, IRS-1, GCKR, UBE2E2, and C2CD4A/B in 1487 Japanese individuals (724 patients with T2D and 763 controls). A GRS was calculated according to the number of risk alleles by counting all 14 SNPs (T-GRS) as well as 11 SNPs related to β-cell function (β-GRS) and then assessing the association between each GRS and the clinical features. The T-GRS was significantly associated with T2D (P = 5.9 × 10-21). Among the subjects with T2D, the β-GRS was associated with individuals receiving insulin therapy ( P = 0.0431), age at diagnosis (P = 0.0029), and C-peptide index (P = 0.0125).
Our data suggests that the β-GRS is associated with reduced beta cell functions and may be useful for selecting patients who should receive more aggressive β-cell preserving therapy.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (17 results)

All 2015 2014 2013 2012

All Journal Article (11 results) (of which Peer Reviewed: 11 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (6 results)

  • [Journal Article] Replication study in a Japanese population to evaluate the association between 10 SNP loci, identified in European genome-wide association studies, and type 2 diabetes.2015

    • Author(s)
      Matsuba R,, Sakai K, Imamura M, Tanaka Y, Iwata M, Hiroshe H, Kaku K, Maegawa H, WatadaH, Tobe K, Kashiwagi A, Kawamori R, Maeda S.
    • Journal Title

      Plos One

      Volume: 10 Issue: 5 Pages: e0126363-e0126363

    • DOI

      10.1371/journal.pone.0126363

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome-wide association study identifies three novel loci for type 2 diabetes2014

    • Author(s)
      Hara K, Fujita H, Johnson TA, Yamauchi T, Yasuda K, Horikoshi M, Peng C, Hu C, Ma RC, Imamura M, et al
    • Journal Title

      Hum Mol Genet

      Volume: 23 Issue: 1 Pages: 239-246

    • DOI

      10.1093/hmg/ddt399

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Replication study for the association of 9 East Asian GWAS-derived loci with susceptibility to type 2 diabetes in a Japanese population2013

    • Author(s)
      Sakai K, Imamura M, Tanaka Y, Iwata M, Hirose H, Kaku K, Maegawa H, Watada H, Tobe K, Kashiwagi A, Kawamori R, Maeda S
    • Journal Title

      PLoS One

      Volume: 8 Issue: 9 Pages: e76317-e76317

    • DOI

      10.1371/journal.pone.0076317

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Assessing the clinical utility of a genetic risk score constructed using 49 susceptibility alleles for type 2 diabetes in a Japanese population2013

    • Author(s)
      Imamura M, Shigemizu D, Tsunoda T, Iwata M, Maegawa H, Watada H, Hirose H, Tanaka Y, Tobe K, Kaku K, Kashiwagi A, Kawamori R, Maeda S
    • Journal Title

      J Clin Endocrinol Metab

      Volume: 98(10) Issue: 10 Pages: E1667-E1673

    • DOI

      10.1210/jc.2013-1642

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Replication study for the association of a single-nucleotide polymorphism, rs3746876, within KCNJ15, with susceptibility to type 2 diabetes in a Japanese population2013

    • Author(s)
      Fukuda H, Imamura M, Tanaka Y, Iwata M, Hirose H, Kaku K, Maegawa H, Watada H, Tobe K, Kashiwagi A, Kawamori R, Maeda S.
    • Journal Title

      J Hum Genet

      Volume: 58 Issue: 7 Pages: 490-493

    • DOI

      10.1038/jhg.2013.28

    • NAID

      10031190046

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genome-wide Association Study Identifies a Novel Locus Contributing to Type 2 Diabetes Susceptibility in Sikhs of Punjabi Origin From India2013

    • Author(s)
      Saxena R, Yamauchi T, Hara K Saxena R, Yamauchi T, Hara K DIAGRAM MuTHER; TGEN, Kadowaki T
    • Journal Title

      Diabetes

      Volume: 62 Issue: 5 Pages: 1746-1755

    • DOI

      10.2337/db12-1077

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Replication study for the association of rs391300 in SRR and rs17584499 in PTPRD with susceptibility to type 2 diabetes in a Japanese population2013

    • Author(s)
      Imamura M, Iwata M, Maegawa H, Watada H, Hirose H, Tanaka Y, Tobe K, Kaku K, Kashiwagi A, Kadowaki T, Kawamori R and Maeda S
    • Journal Title

      J Diabetes Invest

      Volume: Volume 4 Issue 2 Issue: 2 Pages: 168-173

    • DOI

      10.1111/jdi.12017

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genetic risk score constructed using 14 susceptibility alleles for type 2 diabetes is associated with the early onset of diabetes and may predict the future requirement of insulin injections among Japanese individuals2012

    • Author(s)
      Iwata M, Hara K, Kadowaki T
    • Journal Title

      Diabetes Care

      Volume: 35 Issue: 8 Pages: 1763-1770

    • DOI

      10.2337/dc11-2006

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A single nucleotide polymorphism within DUSP9 is associated with susceptibility to type 2 diabetes in a Japanese population.2012

    • Author(s)
      Hisashi Fukuda
    • Journal Title

      PLoS One

      Volume: 7 Issue: 9 Pages: e46263-e46263

    • DOI

      10.1371/journal.pone.0046263

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.2012

    • Author(s)
      Imamura M, Maeda S, Yamauchi T, Hara K, Yasuda K,..., Okada-Iwabu M, Iwabu M, Shojima N,..., Nakamura Y, Kadowaki T
    • Journal Title

      Human Molecular Genetics

      Volume: 21 Issue: 13 Pages: 3042-3049

    • DOI

      10.1093/hmg/dds113

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Variations with modest effects have an important role in the genetic background of type 2 diabetes and diabetes-related traits2012

    • Author(s)
      Fujita H, Hara K, Kadowaki T
    • Journal Title

      J Hum Genet

      Volume: 57 Issue: 12 Pages: 776-779

    • DOI

      10.1038/jhg.2012.110

    • NAID

      10031145885

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 欧米人集団ゲノムワイド関連解析で同定された2型糖尿病感受性遺伝子領域の日本人集団における検証2014

    • Author(s)
      酒井 健輔, 今村 美菜子, 岩田 実, 広瀬 寛, 綿田 裕孝, 前川 聡, 戸辺 一之, 柏木 厚典, 加来 浩平, 河盛 隆造, 田中 逸, 前田 士郎
    • Organizer
      第57回日本糖尿病学会年次学術集会
    • Place of Presentation
      大阪
    • Year and Date
      2014-05-22 – 2014-05-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Type 2 diabetes genetic risk score is more strongly associated with basal insulin secretion and insulin requirement than family history in Japanese type 2 diabetic patients.2013

    • Author(s)
      Iwata M., Maeda S., Kamura Y., Takano A., Kato H., Murakami S., Higuchi K., Temaru R., Oda H., Asamizu S., Fukushima Y., Fukuda K., Yamazaki K., Usui ., and Tobe K.
    • Organizer
      49th Annual Meeting of the European-Association-for-the-Study-of-Diabetes
    • Place of Presentation
      Barcelona
    • Related Report
      2013 Research-status Report
  • [Presentation] Comparison of clinical usefulness between type 2 diabetes genetic risk score and family history in Japanese type 2 diabetic patients.2013

    • Author(s)
      Iwata M., Maeda S., Kamura Y., Takano A., Kato H., Murakami S., Higuchi K., Temaru R., Asamizu S., Oda H., Fukushima Y., and Tobe K.
    • Organizer
      14th International Diabetes Federation
    • Place of Presentation
      Melbourne
    • Related Report
      2013 Research-status Report
  • [Presentation] Genetic risk scoreと糖尿病家族歴の情報から成るfamily history scoreの糖尿病臨床像との関連性における比較検討2013

    • Author(s)
      岩田 実,前田士郎,加村 裕,高野敦子,村上史峰,加藤弘巳,福島泰男,手丸理恵,赤川直次,樋口清博,薄井 勲,石木 学,小橋親晃,山崎勝也,浦風雅春,浅水幸恵,井窪万里子,小田寛文,五十嵐保文,多喜和子,福田一仁,戸辺一之
    • Organizer
      第56回日本糖尿病学会年次学術集会
    • Place of Presentation
      熊本
    • Related Report
      2013 Research-status Report
  • [Presentation] FTO遺伝子多型は男性において糖尿病発症に関連する.2012

    • Author(s)
      岩田 実,前田士郎,加村 裕,高野敦子,村上史峰,加藤弘巳,福島泰男,手丸理恵,赤川直次,樋口清博,他
    • Organizer
      第55回日本糖尿病学会年次学術集会
    • Place of Presentation
      横浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 遺伝的リスクスコア(Genetic risk score)は糖尿病診断時年齢やインスリン分泌能と関連する2012

    • Author(s)
      岩田 実,前田 士郎, 加村 裕, 高野 敦子, 手丸 理恵, 加藤 弘巳, 赤川 直次, 村上 史峰, 樋口 清博, 戸辺 一之
    • Organizer
      第109回日本内科学会総会
    • Place of Presentation
      京都
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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