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Photo-induced stractural dynamics of proteins studied with intense mid-infrared laser pulses

Research Project

Project/Area Number 24540323
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Condensed matter physics I
Research InstitutionOsaka University

Principal Investigator

NAKAMURA Ryosuke  大阪大学, 産学連携本部, 講師 (70379147)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords超高速分光 / タンパク質 / 反応制御
Outline of Final Research Achievements

To reveal proton transfer and structural isomerization dynamics of photoactive yellow protein (PYP), we have developed the pump-pump-probe spectroscopy: The first pump pulse at 400 nm initiates the photocycle of PYP, the second pulse at mid-infrared modulates the vibrational states of the chromophore, and the subsequent broadband probe pulse measures the absorption spectrum of PYP. We have examined the effect of the mid-infrared pump pulse on the photocycle of PYP with a variety of the frequency and timing of the second pump pulse. It is found that the effect is less than our system noise level, 10<sup>-4</sup>. However, by using this method, we obtained the unified view of the vibrational energy flow in the electronic ground state of PYP. In addition, ultrafast hydrogen bonding dynamics in the electronic excited state was revealed with the femtosecond stimulated Raman spectroscopy.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2015 2014 2013 2012

All Journal Article (4 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (9 results)

  • [Journal Article] Vibrational Dynamics in Photoactive Yellow Protein Revealed by Mid-IR Pump/Visible Probe Spectroscopy2015

    • Author(s)
      中村亮介、濱田格雄
    • Journal Title

      Ultrafast Phenomena XIX

      Volume: 162 Pages: 524-527

    • DOI

      10.1007/978-3-319-13242-6_128

    • ISBN
      9783319132419, 9783319132426
    • Related Report
      2014 Annual Research Report
  • [Journal Article] Vibrational Energy Flow in Photoactive Yellow Protein Revealed by Infrared Pump-Visible Probe Spectroscopy2015

    • Author(s)
      中村亮介、濱田格雄
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: - Issue: 19 Pages: 5957-5961

    • DOI

      10.1021/jp512994q

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural Evolution in Photoactive Yellow Protein Studied by Femtosecond Stimulated Raman Spectroscopy2013

    • Author(s)
      中村亮介
    • Journal Title

      EPJ Web of Conferences

      Volume: 41 Pages: 07008-07008

    • DOI

      10.1051/epjconf/20134107008

    • Related Report
      2012 Research-status Report
  • [Journal Article] Ultrafast Hydrogen-Bonding Dynamics in the Electronic Excited State of Photoactive Yellow Protein Revealed by Femtosecond Stimulated Raman Spectroscopy2012

    • Author(s)
      中村亮介
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 116 Issue: 51 Pages: 14768-14775

    • DOI

      10.1021/jp308433a

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Vibrational energy flow in photoactive yellow protein studied by infrared pump and visible probe spectroscop2015

    • Author(s)
      中村亮介、濱田格雄
    • Organizer
      International Conference on Time-Resolved Vibrational Spectroscopy
    • Place of Presentation
      マディソン(アメリカ)
    • Year and Date
      2015-06-21 – 2015-06-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Vibrational Energy Flow of Chromophore in Protein Probed by IR Pump and Visible Probe Spectroscopy2015

    • Author(s)
      中村亮介、濱田格雄
    • Organizer
      3rd International Conference on Ultrafast Structural Dynamics
    • Place of Presentation
      チューリッヒ(スイス)
    • Year and Date
      2015-06-10 – 2015-06-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] Transient IR Pump-Probe Spectroscopy of Photoactive Molecules using Chirped Pulse Upconversion2015

    • Author(s)
      畑秀文、中村亮介、濱田格雄、神村共住
    • Organizer
      3rd International Conference on Ultrafast Structural Dynamics
    • Place of Presentation
      チューリッヒ(スイス)
    • Year and Date
      2015-06-10 – 2015-06-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] チャープパルスアップコンバージョンを用いたタンパク質の中赤外時間分解分光2015

    • Author(s)
      畑秀文、中村亮介、濱田格雄、神村共住
    • Organizer
      第62回応用物理学会春季学術講演会
    • Place of Presentation
      東海大学(神奈川県平塚市)
    • Year and Date
      2015-03-11 – 2015-03-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] Influence of Steric Limitations around Chromophore in Protein Cage of Photoactive Yellow Protein2014

    • Author(s)
      濱田格雄、稲角直也、中村亮介
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] 中赤外光励起によるタンパク質内包色素分子の振動ダイナミクスの研究2014

    • Author(s)
      中村亮介、濱田格雄
    • Organizer
      日本物理学会2014年秋季大会
    • Place of Presentation
      中部大学(愛知県春日井市)
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] 光受容タンパク質の光誘起構造変化と水素結合ダイナミクス2014

    • Author(s)
      中村亮介、濱田格雄
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Vibrational Dynamics in Photoactive Yellow Protein Revealed by Mid-IR Pump / Visible Probe Spectroscopy2014

    • Author(s)
      中村亮介、濱田格雄
    • Organizer
      19th International Conference on Ultrafast Phenomena
    • Place of Presentation
      沖縄コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] 共鳴フェムト秒誘導ラマン分光による光受容蛋白PYPの励起状態構造ダイナミクスの研究2012

    • Author(s)
      中村亮介
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京大学 本郷キャンパス
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2023-03-16  

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