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Recognition of metal-mediated base pairs by DNA polymerases

Research Project

Project/Area Number 24550199
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemistry related to living body
Research InstitutionOsaka University of Pharmaceutical Sciences

Principal Investigator

URATA Hidehito  大阪薬科大学, 薬学部, 教授 (80211085)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords金属錯体型塩基対 / DNAポリメラーゼ / プライマー伸長反応 / 銀(I)イオン / metal-mediated base pair / DNA polymerase / Ag(I) ion / primer extension / Ag(I)-mediated base pair
Outline of Final Research Achievements

In this project, first we studied the DNA polymerase-catalyzed primer extension in the presence of Ag(I) ions and unexpectedly found the formation of not the C-Ag(I)-C base pair but the C-Ag(I)-A base pair. Subsequently, we found the formation of the C-Ag(I)-T base pair by exhaustive screening of DNA polymerase-catalyzed mismatch base pair formation under the presence of various kinds of metal ions. By using very high specificity of the formation of the C-Ag(I)-T base pair and the previously reported T-Hg(II)-T base pair, we demonstrated that two kinds of metal ions, Ag(I) and Hg(II), highly selectively mediate the incorporation of thymidine 5’-triphosphate (dTTP) into the sites opposite cytosine and thymine in the template, respectively. In other words, the regulated incorporation of different metal ions into the programmed sites in duplex by DNA polymerase was successfully achieved.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (14 results)

All 2015 2014 2013 2012 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (12 results)

  • [Journal Article] Regulated Incorporation of Two Different Metal Ions into Programmed Sites in a Duplex by DNA Polymerase Catalyzed Primer Extension2014

    • Author(s)
      Tatsuya Funai, Junko Nakamura, Yuki Miyazaki, Risa Kiriu, Osamu Nakagawa, Shunichi Wada, Akira Ono, and Hidehito Urata
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 53 Issue: 26 Pages: 6624-6627

    • DOI

      10.1002/anie.201311235

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] AgI Ion Mediated Formation of a C–A Mispair by DNA Polymerases2012

    • Author(s)
      Tatsuya Funai
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 51 Issue: 26 Pages: 6464-6466

    • DOI

      10.1002/anie.201109191

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] DNA polymerase による銀(I) 錯体型塩基対形成の塩基選 択性2015

    • Author(s)
      桐生里紗,舩井達也,中村淳子,林淳祐,和田俊一, 浦田秀仁
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] Recognition of Metal-Mediated Base Pairs by DNA Polymerases2014

    • Author(s)
      Tatsuya Funai, Junko Nakamura, Yuki Miyazaki, Risa Kiriu, Osamu Nakagawa, Shun-ichi Wada, Akira Ono, and Hidehito Urata
    • Organizer
      第24回金属の関与する生体関連反応シンポジウム
    • Place of Presentation
      京都薬科大学
    • Year and Date
      2014-06-14 – 2014-06-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Formation of consecutive thymine-Hg(II)-thymine base pairs catalyzed by DNA polymerases2013

    • Author(s)
      Chizuko Tagawa, Tatsuya Funai, Osamu Nakagawa, Shun-ichi Wada, Hidetaka Torigoe, Akira Ono, and Hidehito Urata
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University
    • Related Report
      2013 Research-status Report
  • [Presentation] Formation of silver(I) ion-mediated C-T mispair by DNA polymerases2013

    • Author(s)
      Junko Nakamura, Tatsuya Funai, Osamu Nakagawa, Shun-ichi Wada, Hidehito Urata
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University
    • Related Report
      2013 Research-status Report
  • [Presentation] C-A および C-T ミスマッチ塩基対に及ぼす AgI の影響2013

    • Author(s)
      舩井達也、青谷恵美、中川治、和田俊一、浦田 秀仁
    • Organizer
      日本薬学会第133年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2012 Research-status Report
  • [Presentation] Silver(I) Ion-Mediated Cytosine-Adenine Base Pairs Recognized by DNA polymerases.2012

    • Author(s)
      T. Funai, Y. Miyazaki, M. Aotani, E. Yamaguchi, O. Nakagawa, S. Wada, H. Torigoe, A. Ono, H. Urata
    • Organizer
      第39回国際核酸化学シンポジウム
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA polymeraseによるC-AgI-A錯体型塩基対の形成2012

    • Author(s)
      舩井達也、宮崎有紀、青谷恵美、山口瑛理子、中川 治、和田俊一、鳥越秀峰、小野 晶、浦田秀仁
    • Organizer
      第62回日本薬学会近畿支部大会
    • Place of Presentation
      武庫川女子大学
    • Related Report
      2012 Research-status Report
  • [Presentation] DNAポリメラーゼによるミスマッチ塩基対形成に金属イオンが及ぼす影響の網羅的検討2012

    • Author(s)
      宮崎有紀、舩井達也、中川治、和田俊一、浦田秀仁
    • Organizer
      第62回日本薬学会近畿支部大会
    • Place of Presentation
      武庫川女子大学
    • Related Report
      2012 Research-status Report
  • [Presentation] ミスマッチ塩基対を含む二重鎖DNAの熱安定性に及ぼすAgIイオンの効果2012

    • Author(s)
      青谷恵美、中川 治、和田俊一、鳥越秀峰、小野 晶、浦田秀仁
    • Organizer
      第62回日本薬学会近畿支部大会
    • Place of Presentation
      武庫川女子大学
    • Related Report
      2012 Research-status Report
  • [Presentation] AgI存在下におけるDNAポリメラーゼによるC-Tミスマッチ塩基対の形成2012

    • Author(s)
      中村淳子、舩井達也、宮崎有紀、山口瑛理子、中川治、和田俊一、浦田秀仁
    • Organizer
      第62回日本薬学会近畿支部大会
    • Place of Presentation
      武庫川女子大学
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA polymeraseによるT-Hg(II)-T錯体型塩基対の連続形成反応の検討

    • Author(s)
      田川知津子、舩井達也、中川治、和田俊一、鳥越秀峰、小野晶、浦田秀仁
    • Organizer
      第63回日本薬学会近畿支部大会
    • Place of Presentation
      同志社女子大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Ag(I)存在下におけるDNAポリメラーゼによるC-Tミスマッチ塩基対の形成

    • Author(s)
      中村淳子、舩井達也、中川治、和田俊一、浦田秀仁
    • Organizer
      第63回日本薬学会近畿支部大会
    • Place of Presentation
      同志社女子大学
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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