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Establishment of a guideline to improve the low-temperature activity of thermophilic enzymes

Research Project

Project/Area Number 24560966
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionTokyo University of Pharmacy and Life Science

Principal Investigator

AKANUMA Satoshi  東京薬科大学, 生命科学部, 助教 (10321720)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords酵素工学 / 好熱菌酵素 / 酵素利用
Outline of Final Research Achievements

Thermophilic enzymes are generally stable and potentially useful for industrial processes. However, a crucial drawback for their use is that they are often nearly inactive at moderate and low temperatures. I previously reported that a small change in side-chain volume of a non-polar residue that interacts with the adenine moiety of the coenzyme NAD enhances the catalytic efficiency of the thermostable 3-isopropylmalate dehydrogenase and lactate dehydrogenase from the extreme thermophile Thermus thermophiles. In this study, I produced mutants of the glucose-1-dehydrogenase from the hyperthermophile Sulfolobus tokodaii in which one of the coenzyme-binding, non-polar residues was replaced by another non-polar residue. Because the mutant showed the improved low-temperature activity, I conclude that a small volume change of a non-polar residue’s side chain that interacts with the adenine of NAD(P) in a dehydrogenase will provide a general method to improve its low temperature activity.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (43 results)

All 2014 2013 Other

All Journal Article (12 results) (of which Peer Reviewed: 11 results) Presentation (20 results) (of which Invited: 5 results) Book (4 results) Remarks (5 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Cloning and characterization of laccase DNA from the Royal Sun Medicinal Mushroom, Agaricus brasiliensis (Higher Basidiomycetes),2014

    • Author(s)
      Matsumoto-Akanuma, Akanuma S, Motoi M, Yamagishi A, Ohno N..
    • Journal Title

      Int. J. Med. Mush.

      Volume: 16 Issue: 4 Pages: 375-393

    • DOI

      10.1615/intjmedmushrooms.v16.i4.80

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of the protein interfaces that form an intermolecular four-helix bundle as studied by computer simulation2014

    • Author(s)
      Fukuda, M., Komatsu, Y., Yamada, H., Morikawa, R., Miyakawa, T., Takasu, M., Akanuma, S., Yamagishi, A
    • Journal Title

      Molecular Simulation

      Volume: 40 Issue: 6 Pages: 498-503

    • DOI

      10.1080/08927022.2013.824571

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Preparation of Phi29 DNA polymerase free of amplifiable DNA using ethidium monoazide, an ultraviolet-free light-emitting diode lamp and trehalose2014

    • Author(s)
      Takahashi, H., Yamazaki, H., Akanuma, S., Kanahara, H., Saito, T., Chimuro, T., Kobayashi, T., Ohtani, T., Yamamoto, K., Sugiyama, S., Kobori, T.
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 2 Pages: e82624-e82624

    • DOI

      10.1371/journal.pone.0082624

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] N-terminal Hydrophobic Amino Acids of Activating Transcription Factor 5 (ATF5) Protein Confer Interleukin 1β (IL-1β)-induced Stabilization.2014

    • Author(s)
      Abe T, Kojima M, Akanuma S, Iwashita H, Yamazaki T, Okuyama R, Ichikawa K, Umemura M, Nakano H, Takahashi S, Takahashi Y
    • Journal Title

      Journal of Biological Chemistry

      Volume: 289 Issue: 7 Pages: 3888-3900

    • DOI

      10.1074/jbc.m113.491217

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of the low-temperature activity of Sulfolobus tokodaii glucose-1-dehydrogenase mutants2014

    • Author(s)
      Sugii, T., Akanuma, S., Yagi, S., Yagyu, K., Shimoda, Y., Yamagishi, A.
    • Journal Title

      J. Biosci. Bioeng

      Volume: *** Issue: 4 Pages: 16010-16010

    • DOI

      10.1016/j.jbiosc.2014.03.002

    • NAID

      110009865416

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] 全生物の共通祖先遺伝子の復元2014

    • Author(s)
      赤沼哲史、山岸明彦
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 72 Pages: 19-23

    • NAID

      40019951563

    • Related Report
      2013 Research-status Report
  • [Journal Article] The simulation study of protein-protein interfaces based on the 4-helix bundle structure2013

    • Author(s)
      Fukuda, M., Komatsu, Y., Morikawa, R., Miyakawa, T., Takasu, M., Akanuma, S., Yamagishi A.
    • Journal Title

      AIP Conf. Proc.

      Volume: 1518 Pages: 606-609

    • DOI

      10.1063/1.4794642

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Experimental evidence for the thermophilicity of ancestral life.2013

    • Author(s)
      Satoshi Akanuma, Yoshiki Nakajima, Shin-ichi Yokobori, Mitsuo Kimura, Naoki Nemoto, Tomoko Mase, Ken-ichi Miyazono, Masaru Tanokura, Akihiko Yamagishi
    • Journal Title

      Proc. Natl. Acad. Sci., U. S. A.

      Volume: 110 Issue: 27 Pages: 11067-11072

    • DOI

      10.1073/pnas.1308215110

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Addition of negatively charged residues can reverse the decrease in the solubility of an acidic protein caused by an artificially introduced non-polar surface patch2013

    • Author(s)
      Yagi, S., Akanuma, S., Yamagishi, A.
    • Journal Title

      BBA Proteins and Proteomics

      Volume: 1844 Issue: 3 Pages: 553-560

    • DOI

      10.1016/j.bbapap.2013.12.011

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Exploring Sequences for Thermally Stable Proteins by the Ancestral Design Method2013

    • Author(s)
      赤沼哲史
    • Journal Title

      Seibutsu Butsuri

      Volume: 53 Issue: 3 Pages: 128-133

    • DOI

      10.2142/biophys.53.128

    • NAID

      10031159063

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Constructing protein nano-fiber and estimation of the electronic state around metal ions2013

    • Author(s)
      Komatsu Y, Fukuda M, Yamada H, Kawamoto S, Miyakawa T, Morikawa R, Takasu M, Yokojima S, Akanuma S, Yamagishi A
    • Journal Title

      International Journal of Quantum Chemistry

      Volume: 112 Issue: 24 Pages: 3750-3755

    • DOI

      10.1002/qua.24206

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Designing the binding surface of proteins to construct nano-fibers2013

    • Author(s)
      Komatsu Y, Yamada H, Kawamoto S, Fukuda M, Miyakawa T, Morikawa R, Takasu M, Akanuma S, Yamagishi A.
    • Journal Title

      Quantum Systems in Chemistry and Physics: Progress in Theoretical Chemistry and Physics

      Volume: 26 Pages: 555-567

    • DOI

      10.1007/978-94-007-5297-9_33

    • ISBN
      9789400752962, 9789400752979
    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Resurrection of ancient proteins to infer the environment temperatures of early life2014

    • Author(s)
      Akanuma S
    • Organizer
      第11回日独先端科学シンポジウム
    • Place of Presentation
      ブレーメン
    • Year and Date
      2014-10-30 – 2014-11-02
    • Related Report
      2014 Annual Research Report
  • [Presentation] Stabilization of industrially useful enzymes by the ancestral design method2014

    • Author(s)
      赤沼哲史
    • Organizer
      ノボザイムズ ジャパンバイオテクノロジーフォーラム
    • Place of Presentation
      千葉
    • Year and Date
      2014-10-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 好熱菌酵素の効率的低温高活性化改変法の開発2014

    • Author(s)
      赤沼哲史、木村彦乃、筒井聡志、内山清、八木創太、山岸明彦
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] コモノートから遡るアミノ酸の種類2014

    • Author(s)
      赤沼哲史
    • Organizer
      第16回日本進化学会大阪大会
    • Place of Presentation
      高槻
    • Year and Date
      2014-08-21 – 2014-08-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Protein simplification to address the amino acid usage of primordial proteins2014

    • Author(s)
      Akanuma S, Nakajima Y, Yokobori S, Yamagishi A
    • Organizer
      Origins2014
    • Place of Presentation
      奈良
    • Year and Date
      2014-07-06 – 2014-07-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 進化情報に基づく古代タンパク質の復元とタンパク質設計への応用2014

    • Author(s)
      赤沼哲史
    • Organizer
      第23回LPS内毒素研究会
    • Place of Presentation
      東京
    • Year and Date
      2014-06-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 古代タンパク質の復元と解析および超好熱性タンパク質設計への応用2014

    • Author(s)
      赤沼哲史、横堀伸一、山岸明彦
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 進化情報に基づく酵素の耐熱化設計2014

    • Author(s)
      赤沼哲史
    • Organizer
      第15回酵素応用シンポジウム
    • Place of Presentation
      名古屋
    • Year and Date
      2014-06-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 進化情報に基づく古代タンパク質の復元とタンパク質設計への応用2014

    • Author(s)
      赤沼哲史
    • Organizer
      第23回 内毒素・LPS研究会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Enhancing the low-temperature activities of thermophilic dehydrogenases2013

    • Author(s)
      Akanuma, S., Yamagishi, A.
    • Organizer
      Thermophiles 2013
    • Place of Presentation
      Regensburg
    • Related Report
      2013 Research-status Report
  • [Presentation] Experimentally testing the hypothesis of a limited amino acid repertoire in primitive proteins2013

    • Author(s)
      Akanuma, S., Nakajima, Y., Yokobori, S., Yamagishi, A.
    • Organizer
      International Astrobiology Workshop 2013
    • Place of Presentation
      相模原
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Restricted amino acid usage in proteins as studied by protein simplification engineering of a resurrected ancestral protein2013

    • Author(s)
      Akanuma, S., Shimada, M., Nakajima, Y., Yokobori, S., Yamagishi, A.
    • Organizer
      第27回地球惑星科学連合大会
    • Place of Presentation
      千葉
    • Related Report
      2013 Research-status Report
  • [Presentation] 全生物共通祖先コモノートの生育温度を実験により推定2013

    • Author(s)
      赤沼哲史、中島慶樹、横堀伸一、山岸明彦
    • Organizer
      第26回日本Archaea研究会講演会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
  • [Presentation] 全生物共通祖先生物の生育温度の実験による推定2013

    • Author(s)
      赤沼哲史、中島慶樹、横堀伸一、山岸明彦
    • Organizer
      日本進化学会第15回大会
    • Place of Presentation
      つくば
    • Related Report
      2013 Research-status Report
  • [Presentation] 遺伝暗号の起源2013

    • Author(s)
      赤沼哲史
    • Organizer
      総研大「惑星科学と生命科学の融合」第3回研究会
    • Place of Presentation
      北杜
    • Related Report
      2013 Research-status Report
  • [Presentation] Empirical estimation of the environmental temperature of the last universal common ancestor2013

    • Author(s)
      Akanuma, S., Nakajima, Y., Yokobori, S., Yamagishi, A.
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Research-status Report
  • [Presentation] 酵素の温度適応化:好熱菌酵素の低温高活性化と祖先配列推定による安定化酵素の設計2013

    • Author(s)
      赤沼哲史,林清香,大貫若菜,徳永千尋,杉井太亮,木村彦乃,坂本さやか,八木創太,横堀伸一,山岸明彦
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
  • [Presentation] 低温高活性化した好熱菌由来脱水素酵素変異体の熱力学的解析

    • Author(s)
      赤沼哲史、徳永千尋、下田有希子、木村彦乃、柳生一樹、山岸明彦
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] 補酵素結合残基の置換による好熱性イソクエン酸脱水素酵素の低温高活性化

    • Author(s)
      木村彦乃、赤沼哲史、山岸明彦
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Related Report
      2012 Research-status Report
  • [Presentation] NAD+のアデニン環と相互作用する非極性アミノ酸残基の置換による好熱菌由来グルコース脱水素酵素の低温高活性化

    • Author(s)
      柳生一樹、下田有希子、赤沼哲史、山岸明彦
    • Organizer
      第2回生物物理学会関東支部会
    • Place of Presentation
      東京農工大学(東京都小金井市)
    • Related Report
      2012 Research-status Report
  • [Book] 「進化分子工学を利用したタンパク質分子育種技術」、進化分子工学 -高速分子進化によるタンパク質・核酸の開発-2013

    • Author(s)
      赤沼哲史、山岸明彦
    • Total Pages
      466
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2013 Research-status Report
  • [Book] 「高機能タンパク質創製技術の現状と展望」、技術予測レポート2023 上巻2013

    • Author(s)
      玉腰雅忠、八木創太、赤沼哲史、山岸明彦
    • Total Pages
      324
    • Publisher
      日本能率協会総合研究所
    • Related Report
      2013 Research-status Report
  • [Book] Chapter 12. Comparative genomics of thermophilic bacteria and archaea. In: Thermophilic Microbes in Environmental and Industrial Biotechnology (Eds. Satyanarayana, T., Litterchild J., Kawarabayasi, Y)2013

    • Author(s)
      Akanuma S, Yokobori S, Yamagishi A
    • Total Pages
      954
    • Publisher
      Springer Science
    • Related Report
      2012 Research-status Report
  • [Book] 第9章 全生物の共通祖先、アストロバイオロジー(山岸明彦編集)2013

    • Author(s)
      赤沼哲史、山岸明彦
    • Total Pages
      344
    • Publisher
      化学同人
    • Related Report
      2012 Research-status Report
  • [Remarks] 赤沼哲史

    • URL

      http://logos.ls.toyaku.ac.jp/~lcb-7/akanuma/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 東京薬科大学生命科学部 極限環境生物学研究室

    • URL

      http://logos.ls.toyaku.ac.jp/~lcb-7/akanuma/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 極限環境生物学研究室

    • URL

      http://logos.ls.toyaku.ac.jp/~lcb-7/

    • Related Report
      2013 Research-status Report
  • [Remarks] 全生物共通祖先生物の生育温度の実験による推定に成功~生命の起源の解明に期待~

    • URL

      http://www.toyaku.ac.jp/news/detail/id/2022/publish/1/

    • Related Report
      2013 Research-status Report
  • [Remarks] 極限環境生物学研究室

    • URL

      http://logos.ls.toyaku.ac.jp/~lcb-7/

    • Related Report
      2012 Research-status Report
  • [Patent(Industrial Property Rights)] 低温における酵素活性を向上させた好熱菌由来酵素の改変体の取得方法、及び低温における酵素活性が向上しているサーマス・サーモフィラス由来3-イソプロピルリンゴ酸脱水素酵素の改変体2014

    • Inventor(s)
      赤沼哲史、木村彦乃、山岸明彦、八尾理文
    • Industrial Property Rights Holder
      赤沼哲史、木村彦乃、山岸明彦、八尾理文
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-040270
    • Filing Date
      2014-03-03
    • Related Report
      2013 Research-status Report
  • [Patent(Industrial Property Rights)] 白金結合剤、及びその利用2013

    • Inventor(s)
      山岸明彦、赤沼哲史、新納寛也、内田達也、秋山勇人、八尾理文
    • Industrial Property Rights Holder
      山岸明彦、赤沼哲史、新納寛也、内田達也、秋山勇人、八尾理文
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2013-083104
    • Filing Date
      2013-04-11
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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