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Establishment and regulation of plant genome by histone modifier complex

Research Project

Project/Area Number 24570065
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Kim Jong-Myong  国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 (90415141)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsエピジェネティクス / ヒストン修飾 / 植物ゲノム / 環境応答 / ヘテロクロマチン / ヒストン / 国際情報交換
Outline of Final Research Achievements

Histone deacetylase6 (HDA6) is a chromatin modifier to establish the heterochromatin structure in Arabidopsis thaliana. We identified working points and target genes of HDA6 complex on the Arabidopsis genome. HDA6 specifically binds to genes responded to jasmonic acid signaling network required for the water deficit responses and COPIA type retro-transporsable element in heterochromatin regions. From these results, it is suggested that there are at least two types of HDA6 complexes. First one is for gene regulation on euchromatic region, and second one is for silencing of heterochromatic region. Perhaps these two types of HDA6 complexes have division of labor on Arabidopsis genome. These results that single epigenetic factor functions different structural targets (euchromatin and heterochromatin) on plant genome are significant achievement to expand and to develop the research field of epigenetic study in plant science.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2016 2015 2014 2013 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (8 results) (of which Int'l Joint Research: 3 results,  Invited: 5 results) Book (1 results)

  • [Journal Article] Chromatin changes in response to drought, salinity, heat, and cold stresses in plants2015

    • Author(s)
      Kim JM, Sasaki T, Ueda M, Sako K, Seki M
    • Journal Title

      Frontiers in Plant Science

      Volume: 6 Pages: 114-114

    • DOI

      10.3389/fpls.2015.00114

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epigenetic regulation of gene responsiveness in Arabidopsis.2014

    • Author(s)
      To T.K., Kim J.M.
    • Journal Title

      Frontiers in Plant Science

      Volume: 4 Pages: 548-554

    • DOI

      10.3389/fpls.2013.00548

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epigenetic regulation of gene responsiveness in Arabidopsis2014

    • Author(s)
      To T.K. and Kim J.M.
    • Journal Title

      Frontiers in PLANT SCIENCE

      Volume: 4 Pages: 548-548

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] The Cold Signaling Attenuator HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Activates FLOWERING LOCUS C Transcription via Chromatin Remodeling under Short-Term Cold Stress in Arabidopsis2013

    • Author(s)
      Jung J.H., Park J.H., Lee S, To T.K., Kim J.M., Seki M. and Park C.M.
    • Journal Title

      Plant Cell

      Volume: 25 Pages: 4378-4390

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Novel Epigenetic and Antisense RNA Regulation in Plant Abiotic Stress Responses2016

    • Author(s)
      Jong-Myong Kim
    • Organizer
      The KEYSTONE SYMPOSIA Plant Epigenetics: From Genotype to Phenotype (B1)
    • Place of Presentation
      Taos, New Mexico, USA
    • Year and Date
      2016-02-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Histone deacetylase triggers the novel mechanism for plant drought tolerance2015

    • Author(s)
      Jong-Myong Kim, Taiko Kim To and Motoaki Seki
    • Organizer
      日本生化学会・日本分子生物学会 2015年会
    • Place of Presentation
      神戸国際会議場、兵庫県神戸市
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Novel epigenetic control of drought tolerance in plants2015

    • Author(s)
      Jong-Myong Kim
    • Organizer
      The International Symposium “Towards Increased Plant Productivity through Understanding of Environmental Responses and Epigenetic Regulation."
    • Place of Presentation
      理化学研究所、神奈川県横浜市
    • Year and Date
      2015-11-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] エピジェネ - 転写 - 代謝解析から見えてきた植物の新規乾燥耐性機構2015

    • Author(s)
      金 鍾明
    • Organizer
      日本育種学会第126回講演会
    • Place of Presentation
      玉川大学
    • Year and Date
      2015-03-21 – 2015-03-22
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ACETIC ACID IS ESSENTIAL FOR DROUGHT TOLERANCE IN PLANTS2013

    • Author(s)
      Kim J.M.
    • Organizer
      International conference of Arabidopsis Research 2013
    • Place of Presentation
      Sydney Convention and Exhibition Centre, Austraria
    • Related Report
      2013 Research-status Report
  • [Presentation] エピジェネティクで耐える –植物の環境ストレス応答におけるヒストン修飾の役割-

    • Author(s)
      金 鍾明
    • Organizer
      北海道大学 理学部 バイオセミナー
    • Place of Presentation
      北海道大学
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 酢酸合成経路を介した植物の新規乾燥耐性機構はエピジェネティックに制御される

    • Author(s)
      金 鍾明
    • Organizer
      日本分子生物学会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] エピジェネティックに制御される酢酸発酵は植物の乾燥耐性獲得に必須である

    • Author(s)
      金 鍾明
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山大学
    • Related Report
      2012 Research-status Report
  • [Book] Methods in Molecular Biology; The Arabdopsis Protocols, 3rd edition.2014

    • Author(s)
      Kim J.M., Endo TA, To K. T., Matsui A, Fiona C. Robertson, Ishida J, Tanaka M, Toyoda T, and Seki M.
    • Total Pages
      22
    • Publisher
      Humana Press.
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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