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Stabilization of drug-target proteins by sulfobetaines

Research Project

Project/Area Number 24570124
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionGunma University

Principal Investigator

Wakamatsu Kaori  群馬大学, 大学院理工学府, 教授 (40222426)

Co-Investigator(Renkei-kenkyūsha) Terawaki Shin-ichi  群馬大学, 大学院理工学府, 助教 (10452533)
Iizuka Yasuko  群馬大学, 理工学部, 技術長 (60375566)
Research Collaborator Hosoda Kazuo  
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords蛋白質 / 安定化 / スルホベタイン / メカニズム / ダイナミクス / GPCR / G蛋白質 / 抗体 / Gタンパク質 / リフォールディング / cis-trans異性化 / タンパク質 / オスモライト
Outline of Final Research Achievements

Stabilization of proteins (prevention of denaturation and aggregation) is important in drug development. Sulfobetaines are a class of protein stabilizer whose mechanisms remain elusive. To elucidate their stabilizing mechanisms, we analyzed their effects on protein dynamics. We found that NDSB-195 enhances the dynamics of β4-α2 loop of ubiquitin molecules and that NDSB-256 enhances the cis-trans isomerization of an Ala-Pro peptide bond. These effects may contribute the stabilizing activities of sulfobetaines by helping the denatured protein molecules escape from kinetic traps. In addition, by expressing proteins and peptides as fusion proteins, we succeeded in obtaining soluble complex of Gαi1 and its activator peptide designed from the junction between the intracellular third loop and sixth transmembrane helix in the m4 muscarinic acetylcholine receptor. We also identified 3 residues in the peptide that are critical for the binding with Gαi1.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (31 results)

All 2016 2015 2014 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 6 results) Presentation (18 results) Remarks (4 results)

  • [Journal Article] Protein stabilizer, NDSB-195, enhances the dynamics of the β4-α2 loop of ubiqutin.2016

    • Author(s)
      Wang, H., Hosoda, K., Ishii, T., Arai, R., Kohno, T., Terawaki, S. & Wakamatsu, K.
    • Journal Title

      J. Pept. Sci.

      Volume: 22 Issue: 3 Pages: 174-180

    • DOI

      10.1002/psc.2855

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural basis for cargo binding and autoinhibition of Bicaudal-D1 by a parallel coiled-coil with homotypic registry.2015

    • Author(s)
      Terawaki S, Yoshikane A, Higuchi Y, Wakamatsu K.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 460 Issue: 2 Pages: 451-456

    • DOI

      10.1016/j.bbrc.2015.03.054

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Biochemical characterization of a heterotrimeric Gi-protein activator peptide designed from the junction between the intracellular third loop and sixth transmembrane helix in the m4 muscarinic acetylcholine receptor2015

    • Author(s)
      Terawaki, S., Matsubayashi, R., Hara, K., Onozuka, T., Wakamatsu, K.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 463 Issue: 1-2 Pages: 64-69

    • DOI

      10.1016/j.bbrc.2015.05.018

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Comparison of Antibody Molecules Produced from Two Cell Lines with Contrasting Productivities and Aggregate Contents2015

    • Author(s)
      Y. Ishii, Y. Imamoto, R. Yamamoto, M. Tsukahara, and K. Wakamatsu
    • Journal Title

      Biological and Pharmaceutical Bulletin

      Volume: 38 Issue: 2 Pages: 306-316

    • DOI

      10.1248/bpb.b14-00729

    • NAID

      130004872244

    • ISSN
      0918-6158, 1347-5215
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A rapid method for simultaneous evaluation of free light chain content and aggregate content in culture media of Chinese hamster ovary cells expressing monoclonal antibodies for cell line screening2015

    • Author(s)
      Y. Ishii, M. Tsukahara, and K. Wakamatsu
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 121 Issue: 4 Pages: 464-470

    • DOI

      10.1016/j.jbiosc.2015.08.002

    • NAID

      40020813078

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical characterization of a heterotrimeric Gi-protein activator peptide designed from the junction between the intracellular third loop and sixth transmembrane helix in the m4 muscarinic acetylcholine receptor2015

    • Author(s)
      S. Terawaki, R. Matsubayashi, K. Hara, T. Onozuka, T. Kohno, and K. Wakamatsu
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: in press

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Crystallographic characterization of the C-terminal coiled-coil region of mouse Bicaudal-D1 (BICD1)2014

    • Author(s)
      S. Terawaki, H. Ootsuka, Y. Higuchi, and K. Wakamatsu
    • Journal Title

      Acta Cryst.F

      Volume: 70 Issue: 8 Pages: 1103-1106

    • DOI

      10.1107/s2053230x1401276x

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Refolding additive, dimethylbenzylammonium propane sulfonate (NDSB- 256), accelerates gly-pro cis-trans isomerization2014

    • Author(s)
      H. Wang, K. Hosoda, S. Terawaki, and K. Wakamatsu
    • Journal Title

      Protein Pept. Lett.

      Volume: 22 Issue: 3 Pages: 234-238

    • DOI

      10.2174/0929866521666141124103904

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Efficient folding/assembly in Chinese hamster ovary cells is critical for high quality (low aggregate content) of secreted trastuzumab as well as for high production: Stepwise multivariate regression analyses2014

    • Author(s)
      Ishii Y., Murakami J., Sasaki K., Tsukahara M., Wakamatsu K.
    • Journal Title

      J. Biosci. Bioeng.

      Volume: in press Issue: 2 Pages: 223-230

    • DOI

      10.1016/j.jbiosc.2014.01.013

    • NAID

      110009840789

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Wntシグナル伝達因子CCD1のDIXドメインを介する新規な自己活性制御の構造基盤の解明2015

    • Author(s)
      藤田祥平、寺脇慎一、塩見健輔、桝和子、桝正幸、若松馨、柴田直樹、樋口芳樹
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Non-detergent sulfobetaine (NDSB)がタンパク質のダイナミクスに及ぼす効果2015

    • Author(s)
      王海梅、石井毅、細田和男、河野俊之、寺脇慎一、若松馨
    • Organizer
      第54回NMR討論会
    • Place of Presentation
      千葉工業大学(千葉県習志野市)
    • Year and Date
      2015-11-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] 可溶化したM2 muscarinic acetylcholine receptorのNon-Detergent SulfoBetaineによる安定化2015

    • Author(s)
      神山亮司,山井俊英,寺脇慎一,武田茂樹,若松馨
    • Organizer
      平成27年度日本生化学会関東支部例会
    • Place of Presentation
      新潟日報メディアシップ(新潟県新潟市)
    • Year and Date
      2015-06-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] GPCR模倣ペプチドと三量体Gタンパク質との複合体の調製と動的光散乱による溶液状態の分析2015

    • Author(s)
      小野塚樹、寺脇慎一、河野俊之、若松馨
    • Organizer
      平成27年度日本生化学会関東支部例会
    • Place of Presentation
      新潟日報メディアシップ(新潟県新潟市)
    • Year and Date
      2015-06-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 逆行性輸送因子 BICD1の積荷認識および制御機構に重要なアミノ酸残基の同定2015

    • Author(s)
      吉兼明日香、寺脇慎一、樋口芳樹、若松馨
    • Organizer
      平成27年度日本生化学会関東支部例会
    • Place of Presentation
      新潟日報メディアシップ(新潟県新潟市)
    • Year and Date
      2015-06-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] Non-Detergent SulfoBetaineが蛋白質に及ぼす効果2015

    • Author(s)
      神山亮司、山井俊英、王梅梅、細田和男、寺脇慎一、武田茂樹、若松馨
    • Organizer
      第42回生体分子科学討論会2015
    • Place of Presentation
      高崎シティーギャラリー(群馬県高崎市)
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] m4ムスカリン性アセチルコリン受容体の細胞内第3ループ/第6膜貫通ヘリックスペプチドとGαi1との相互作用解析2014

    • Author(s)
      原加奈子、松林里奈、寺脇慎一、河野俊之、若松馨
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2014-10-16
    • Related Report
      2014 Research-status Report
  • [Presentation] タンパク質安定化剤・スルホベタインが各種分子間・分子内相互作用に及ぼす効果2013

    • Author(s)
      大槻竜太郎,角優樹,荒井諒,出村哲郎,中沢和磨,真井隆徳,手塚福栄,吉澤光彦,王海梅,石井毅,寺脇慎一,若松馨
    • Organizer
      第13回日本タンパク質科学会
    • Place of Presentation
      とりぎん文化会館(鳥取県,鳥取市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Analysis of the mechanisms whereby sulfobetaines stabilize proteins2013

    • Author(s)
      Kaori Wakamatsu, Tetsuro Demura, Ryutaro Ohtsuki, Ryo Arai, Akino Sayama, Mutsumi Wakayama, Takanori Sanai, Fukuei Tetsuka, Mitsuhiko Yoshizawa, Haimei Wang, Takeshi Ishii, Kazuo Hosoda, Yasuko Iizuka, Nobukazu Nameki
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜(神奈川県,横浜市)
    • Related Report
      2013 Research-status Report
  • [Presentation] タンパク質変性協同性に及ぼすタンパク質安定化剤NDSBの効果2013

    • Author(s)
      出村哲朗,角優樹,吉澤光彦,五十嵐麗樹,向瓏,石井毅,若松馨
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] non-detergent sulfobetaine(NDSB)によるG蛋白質共役型受容体(GPCR)の熱安定化2012

    • Author(s)
      山井俊英,高橋怜羅,中島正人,山下直樹,武田茂樹,若松馨
    • Organizer
      生化学会関東支部例会
    • Place of Presentation
      群馬大学昭和キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] non-detergent sulfobetaine (NDSB)による G 蛋白質共役型受 容体 (GPCR)の熱安定化2012

    • Author(s)
      Toshihide Yamai, Layla Takahashi, Masato Nakajima, Naoki Yamashita, Takeshi Ishii, Shigeki Takeda, Kaori Wakamatsu
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] m4ムスカリン性アセチルコリン受容体細胞内第三ループ・ペプチドの立体構造解析2012

    • Author(s)
      長谷川佑樹、加藤瀬里、小堀加奈子、楠英樹、河野俊之、若松馨
    • Organizer
      日本化学会関東支部群馬地区地域懇談会
    • Place of Presentation
      群馬工業高等専門学校
    • Related Report
      2012 Research-status Report
  • [Presentation] Thermal stabilization of G protein-coupled receptor by non-detergent sulfobetaines (NDSBs)2012

    • Author(s)
      Kaori Wakamatsu, Toshihide Yamai, Layla Takahashi, Masato Nakajima, Naoki Yamashita, Takeshi Ishii, Kazuo Hosoda, Shigeki Takeda
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] アミロイド線維形成を抑制するCholine-O-sulfateのサルフェート基の有効性の検討

    • Author(s)
      荒井諒,萩原護,武井彩香,行木信一,若松馨
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨大学甲府西キャンパス(甲府市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Non-detergent Sulfobetaine(NDSB)によるG蛋白質共役型受容体(GPCR)の熱安定化

    • Author(s)
      山井俊英,高橋玲羅,中島正人,山下直樹,石井毅,武田茂樹,若松馨
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨大学甲府西キャンパス(山梨県,甲府市)
    • Related Report
      2013 Research-status Report
  • [Presentation] アミド結合を含む界面活性剤の合成

    • Author(s)
      稲葉啓浩,大塚絵梨香,山田圭一,若松馨
    • Organizer
      平成25年度日本化学会関東支部群馬地区地域懇談会
    • Place of Presentation
      日本原子力研究開発機構高崎量子応用研究所(群馬県,高崎市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Gタンパク質共役型受容体による三量体Gタンパク質の活性化機構に関する構造生物学的研究

    • Author(s)
      松林里奈,寺脇慎一,若松馨
    • Organizer
      平成25年度日本化学会関東支部群馬地区地域懇談会
    • Place of Presentation
      日本原子力研究開発機構高崎量子応用研究所(群馬県,高崎市)
    • Related Report
      2013 Research-status Report
  • [Remarks] 研究概要

    • URL

      http://wakamatsu-lab.chem-bio.st.gunma-u.ac.jp/Wakamatsu-lab/Research.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 原著論文

    • URL

      http://wakamatsu-lab.chem-bio.st.gunma-u.ac.jp/Achievements/publications.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 構造生物学研究室(若松研究室)

    • URL

      http://wakamatsu-lab.chem-bio.st.gunma-u.ac.jp/Wakamatsu-lab/Top.html

    • Related Report
      2013 Research-status Report
  • [Remarks] 構造生物学研究室 (若松研究室)

    • URL

      http://wakamatsu-lab.dept.eng.gunma-u.ac.jp/Wakamatsu-lab/Top.html

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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