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Characterization of biosynthesis and regulation mechanisms of sufur-modification in tRNA

Research Project

Project/Area Number 24570173
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

SHIGI Naoki  独立行政法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員 (20392623)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords核酸 / タンパク質 / tRNA / RNA転写後修飾 / 酵素 / 硫黄転移反応 / タンパク質翻訳後修飾 / 好熱菌 / sulfur / ubiquitin / thermophile
Outline of Final Research Achievements

Post-translaional modification of RNA is one of the important features of RNA molecules. In this study, the biosynthesis pathway of thiouridine found in tRNA of thermophilic bacteria was analyzed. An in vitro reconstitution system for tRNA thiolation reaction suitable for the quantitative analysis was constructed. By using this system and information of the three-dimensional structure of the thiolation enzyme, a novel reaction mechanism for the thiolation reaction was suggested.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (19 results)

All 2014 2013 2012 Other

All Journal Article (4 results) (of which Peer Reviewed: 2 results) Presentation (13 results) Remarks (2 results)

  • [Journal Article] ユビキチン修飾系の起源はRNAの硫黄修飾系?2014

    • Author(s)
      鴫 直樹
    • Journal Title

      生物工学会誌

      Volume: 92巻 Pages: 364-364

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Biosynthesis and functions of sulfur modifications in tRNA2014

    • Author(s)
      鴫 直樹
    • Journal Title

      Frontiers in Genetics

      Volume: 5巻67号 Pages: 1-11

    • DOI

      10.3389/fgene.2014.00067

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA2013

    • Author(s)
      Hirofumi Nakagawa
    • Journal Title

      Proteins:Structure, function, and bioinformatics

      Volume: Epub ahead of print Issue: 7 Pages: 1232-1244

    • DOI

      10.1002/prot.24273

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 好熱性真正細菌におけるtRNA硫黄修飾塩基とユビキチン類似翻訳後修飾2013

    • Author(s)
      鴫 直樹
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 71 Pages: 146-149

    • NAID

      10031159698

    • Related Report
      2012 Research-status Report
  • [Presentation] Elucidating of the novel tRNA posttranscriptional modification mechanism2014

    • Author(s)
      陳 明皓、奈良井 峻、大村 直毅、田中 良和、鴫 直樹、田中 勲、姚 閔
    • Organizer
      2nd Internatiolnal Life-Science Symposium
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2014-10-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] 好熱菌tRNA硫黄修飾塩基の生合成機構2014

    • Author(s)
      中川 裕文、倉谷 光央、伊藤(後藤) 桜子、伊藤 拓宏、桂 一茂、寺田 貴帆、白水 美香子、関根 俊一、鴫 直樹、横山 茂之
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場(京都市)
    • Year and Date
      2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] tRNA リボウリジンの2-チオ化修飾酵素の結晶構造解析2014

    • Author(s)
      陳 明皓、大村 直毅、田中 良和、鴫 直樹、田中 勲、姚 閔
    • Organizer
      第27回日本放射光学会年会
    • Place of Presentation
      広島国際会議場(広島市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 原核生物のユビキチン類似翻訳後修飾現象の機能解析2014

    • Author(s)
      鴫 直樹
    • Organizer
      LS-BT合同研究発表会
    • Place of Presentation
      産業技術総合研究所(つくば市)
    • Related Report
      2013 Research-status Report
  • [Presentation] tRNA硫黄修飾塩基の生合成機構とユビキチン類似翻訳後修飾2013

    • Author(s)
      鴫 直樹
    • Organizer
      第86回 日本生化学会大会
    • Place of Presentation
      パシフィコ横浜 (横浜市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA2013

    • Author(s)
      中川 裕文、倉谷 光央、伊藤(後藤) 桜子、伊藤 拓宏、桂 一茂、寺田 貴帆、白水 美香子、関根 俊一、鴫 直樹、横山 茂之
    • Organizer
      The 9th International Symposium on Aminoacyl-tRNA Synthetases
    • Place of Presentation
      Hakone, Japan
    • Related Report
      2013 Research-status Report
  • [Presentation] 好熱菌tRNA硫黄修飾塩基の生合成機構2013

    • Author(s)
      中川 裕文、倉谷 光央、伊藤(後藤) 桜子、伊藤 拓宏、桂 一茂、寺田 貴帆、白水 美香子、関根 俊一、鴫 直樹、横山 茂之
    • Organizer
      極限環境生物学会2013年度(第14回)年会
    • Place of Presentation
      明治大学生田キャンパス(川崎市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 真正細菌tRNA硫黄修飾塩基の生合成における ユビキチン類似翻訳後修飾の発見2013

    • Author(s)
      鴫 直樹
    • Organizer
      LS-BT合同研究発表会
    • Place of Presentation
      つくば
    • Related Report
      2012 Research-status Report
  • [Presentation] 真正細菌tRNA硫黄修飾塩基の生合成におけるユビキチン類似翻訳後修飾の発見とその機能2012

    • Author(s)
      鴫 直樹
    • Organizer
      第14回 日本RNA学会年会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] tRNA硫黄修飾酵素TtuAの機能構造解析2012

    • Author(s)
      中川 裕文
    • Organizer
      第14回 日本RNA学会年会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] 真正細菌tRNA硫黄修飾塩基の生合成における ユビキチン類似翻訳後修飾の発見とその機能2012

    • Author(s)
      鴫 直樹
    • Organizer
      第13回極限環境生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA2012

    • Author(s)
      Hirofumi Nakagawa
    • Organizer
      XXIV tRNA conference
    • Place of Presentation
      Olume (Chile)
    • Related Report
      2012 Research-status Report
  • [Presentation] Post-translational modification of cellular proteins by a ubiquitin-like protein in tRNA thiouridine synthesis in Bacteria2012

    • Author(s)
      Naoki Shigi
    • Organizer
      XXIV tRNA conference
    • Place of Presentation
      Olume (Chile)
    • Related Report
      2012 Research-status Report
  • [Remarks] 産業技術総合研究所バイオメディカル研究部門次世代ゲノム機能研究グループ

    • URL

      https://unit.aist.go.jp/biomed-ri/ci/rg/gnf-uyeda/gnf-introduction.html

    • Related Report
      2013 Research-status Report
  • [Remarks] tRNAの硫黄修飾塩基の生合成系の解析

    • URL

      http://unit.aist.go.jp/birc2/RNA/topix4.html

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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