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Phyical Chemical Analysis of conformational dynamics of globular proteins

Research Project

Project/Area Number 24570181
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionNagoya University

Principal Investigator

Maki Kosuke  名古屋大学, 理学(系)研究科(研究院), 准教授 (30361570)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsフォールディング / 蛋白質 / 構造形成
Outline of Final Research Achievements

The specific aim of this study is to understand the mechanisms of protein folding in terms of physical chemistry, by quantitatively representing the structural and energetic characteristics of relevant species. Nonuniform chain collapse was observed in the early folding of staphylococcal nuclease by using ultrarapid mixing methods combined with fluorescence resonance energy transfer, indicating that specific interactions play a major role in forming early folding intermediates. A systematic study on urea-induced folding of apomyoglobin, using ultrarapid mixing methods, revealed that an ensemble of folding intermediates, which transiently accumulates during folding under strongly native conditions, is formed by the same kinetics as the equilibrium intermediate, which stably populated at equilibrium under moderately denaturing conditions, indicating that these molecular species consist of a single molecular species.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (23 results)

All 2015 2014 2013 2012

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (21 results) (of which Invited: 4 results)

  • [Journal Article] Evidence for a Shared Mechanism in the Formation of Urea-Induced Kinetic and Equilibrium Intermediates of Horse Apomyoglobin from Ultrarapid Mixing Experiments.2015

    • Author(s)
      Mizukami T, Abe Y, Maki K
    • Journal Title

      PLOS ONE

      Volume: 10 Issue: 8 Pages: e0134238-e0134238

    • DOI

      10.1371/journal.pone.0134238

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Nonuniform chain collapse during early stages of staphylococcal nuclease folding detected by fluorescence resonance energy transfer and ultrarapid mixing methods.2013

    • Author(s)
      Mizukami, T., Xu, M., Cheng, H., Roder, H., Maki K.
    • Journal Title

      Protein Science

      Volume: 22 Issue: 10 Pages: 1336-1348

    • DOI

      10.1002/pro.2320

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] FRETと高速溶液混合法によるSNaseの凝縮過程の速度論的研究2014

    • Author(s)
      Mizukami, T., Xu, M., Cheng, H., Roder, H., Maki, K.
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] 変異体解析を用いた緑色蛍光蛋白質の安定化機構におけるヒスチジン残基の役割に関する研究2014

    • Author(s)
      Andou, T., Maki, K.
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] ウマアポミオグロビンのpH 4中間体と塩による中間体の速度論的性質2014

    • Author(s)
      Abe, Y., Mizukami, T. Maki, K.
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] ストップト・フロー装置を用いた速度論的研究2014

    • Author(s)
      槇亙介
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホールマリネリア
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 高速溶液混合法を用いたアポミオグロビンの中間体の研究2014

    • Author(s)
      阿部有紀子, 水上琢也, 槇亙介
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学湘南キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] 変異体解析を用いた緑色蛍光蛋白質の安定性におけるヒスチジン残基の役割2014

    • Author(s)
      安藤太一,槇亙介
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学湘南キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] 核磁気共鳴法と分子動力学シミュレーションによるスタフィロコッカル・ヌクレアーゼの水素結合形成の研究2014

    • Author(s)
      寺内駿, 神庭圭佑, 森義治, 榮慶丈, 中村敬, 岡本祐幸, 桑島邦博, 槇亙介
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学湘南キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] Folding of salt-induced intermediate of apomyoglobin using ultrarapid mixing methods.2013

    • Author(s)
      Abe, Y., Mizukami, T., Maki, K.
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会議場
    • Related Report
      2013 Research-status Report
  • [Presentation] The role of histidine residues in folding mechanism of green fluorescent protein studied by mutagenesis approach.2013

    • Author(s)
      Andou, T., Maki, K.
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会議場
    • Related Report
      2013 Research-status Report
  • [Presentation] The Stability and Folding/Unfolding of Staphylococcal Nuclease at the Residue Level.2013

    • Author(s)
      Terauchi, S., Kamba, K., Mori, Y., Sakae, Y., Nakamura, T., Okamoto, Y., Kuwajima, K., Maki, K.
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会議場
    • Related Report
      2013 Research-status Report
  • [Presentation] Heterogeneous intermolecular chain collapse in the early stages of staphylococcal nuclease folding monitored by fluorescence resonance energy2013

    • Author(s)
      Takuya Mizukami, Ming Xu, Heinrich Roder, Kosuke Maki
    • Organizer
      IGER Annual Meeting 2012
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 変異体解析と計算機シミュレーションを用いたスタフィロコッカル・ヌクレアーゼ の構造の研究2013

    • Author(s)
      市川 達人, 森 義治, 榮 慶丈, 岡本 祐幸, 槇 亙介
    • Organizer
      2012年度生物物理学会中部支部講演会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] スタフィロコッカル・ヌクレアーゼの残基ごとの安定性とフォールディング/アンフ ォールディングの研究2013

    • Author(s)
      寺内駿, 神庭圭佑, 森義治, 榮慶丈, 中村敬, 岡本祐幸, 桑島邦博, 槇亙介
    • Organizer
      2012年度生物物理学会中部支部講演会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 核磁気共鳴法とレプリカ交換分子動力学シミュレーションによるスタフィロコッカル・ヌクレアーゼの安定性とフォールディング/アンフォールディングの研究2013

    • Author(s)
      寺内駿, 神庭圭佑, 森義治, 榮慶丈, 中村敬, 岡本祐幸, 桑島邦博, 槇亙介
    • Organizer
      第68回日本物理学会年次大会
    • Place of Presentation
      広島大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Stability and Folding/unfolding of staphylococcal nculease at residue level.2012

    • Author(s)
      槇亙介
    • Organizer
      Indo-Japan Workshop in Recent Advances in Spectroscopy and Microscopy: Fundamentals and Applications to Materials and Biology
    • Place of Presentation
      Hyderabad, India
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Folding mechanisms of apomyoglobin: a classical model protein of protein folding studies.2012

    • Author(s)
      槇亙介
    • Organizer
      第12回日本蛋白質科学会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Folding of staphylococcal nuclease, a classical model protein.2012

    • Author(s)
      槇亙介
    • Organizer
      IGER symposium on Science of Molecular Assembly and Biomolecular Systems 2012
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 蛍光共鳴エネルギー移動を用いたスタフィロコッカル・ヌクレアーゼのフォールディングに伴う分子内凝縮過程の研究2012

    • Author(s)
      水上琢也, Heinrich Roder, 槇亙介
    • Organizer
      第12回日本蛋白質科学会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] Intramolecular collapse during the folding of staphylococcal nuclease monitored by fluorescence resonance energy transfer2012

    • Author(s)
      Takuya Mizukami, Heinrich Roder, Kosuke Maki
    • Organizer
      26th Annual Symposium of the Protein Society
    • Place of Presentation
      San Diego, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] Heterogeneous intramolecular chain collapse in the early stages of staphylococcal nuclease folding monitored by fluorescence resonance energy transfer and ultrarapid mixing2012

    • Author(s)
      Takuya Mizukami, Ming Xu, Heinrich Roder, Kosuke Maki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Structural properties of staphylococcal nuclease probed by Föster Resonance Energy Transfer2012

    • Author(s)
      Tatsuhito Ichikawa, Yoshiharu Mori, Yoshitake Sakae, Yuko Okamoto、 Kosuke Maki
    • Organizer
      IGER symposium on Science of Molecular Assembly and Biomolecular Systems 2012
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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