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Studies on the roles of cavity and hydration on the enzymatic function

Research Project

Project/Area Number 24570186
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionHiroshima University

Principal Investigator

OHMAE Eiji  広島大学, 理学(系)研究科(研究院), 助教 (30284152)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Keywords水和 / 高圧力 / 酵素
Outline of Final Research Achievements

High-pressure stopped-flow absorbance / fluorescence spectrometer was set upped to our laboratory. The absorbance and fluorescence spectra of fluorescein were sufficiently measured but the fluorescence spectrum of intrinsic tryptophan residues of a protein was not detected by this apparatus. We measured pressure dependences of the enzymatic kinetics parameters for the wild-type and D27E mutant dihydrofolate reductases from Escherichia coli (ecDHFR) and that from deep-sea bacterium Moritella profunda (mpDHFR). The obtained Km values for ecDHFR D27E mutant and mpDHFR were less pressure-dependent than that of the wild-type ecDHFR, suggesting that the hydration around active site is important for the adaptation of DHFR to deep-sea. The results of this study clarify the molecular adaptation mechanisms of proteins from deep-sea organisms to the high-pressure environment, and give a novel guideline for the alteration of enzymes to their utilization purposes such as high-pressure condition.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (34 results)

All 2015 2014 2013 2012

All Journal Article (8 results) (of which Peer Reviewed: 6 results,  Acknowledgement Compliant: 2 results) Presentation (24 results) (of which Invited: 2 results) Book (2 results)

  • [Journal Article] VUVCD spectra of aromatic and aliphatic amino acids and their derivatives2015

    • Author(s)
      S. Tanaka, E. Ohmae, and K. Matsuo
    • Journal Title

      HiSOR Activity Report 2014

      Volume: なし

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Effects of salt on the structure, stability, and function of a halophilic dihydrofolate reductase from a hyperhalophilic archaeon, Haloarcula japonica strain TR-1.2015

    • Author(s)
      Y. Miyashita, E. Ohmae, K. Nakasone, and K. Katayanagi,
    • Journal Title

      Extremophiles

      Volume: 19 Issue: 2 Pages: 479-493

    • DOI

      10.1007/s00792-015-0732-7

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 深海微生物由来ジヒドロ葉酸還元酵素の高圧力環境適応機構2015

    • Author(s)
      大前英司、宮下由里奈、月向邦彦、加藤千明
    • Journal Title

      第18回生物関連高圧研究会シンポジウム抄録集

      Volume: 印刷中

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Contributions of phenylalanine and tyrosine side chains to the vacuum-ultraviolet circular dichroism spectra of Escherichia coli dihydrofolate reductase2014

    • Author(s)
      E. Ohmae, S. Tanaka, K. Matsuo, H. Namatame, M. Taniguchi, and K. Gekko
    • Journal Title

      HiSOR Activity Report 2013

      Volume: なし Pages: 138-139

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Thermodynamic and functional characteristics of deep-sea enzymes revealed by pressure effects2013

    • Author(s)
      E. Ohmae, Y. Miyashita, and C. Kato
    • Journal Title

      Extremophiles

      Volume: 17 Issue: 5 Pages: 701-709

    • DOI

      10.1007/s00792-013-0556-2

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Solvent environments significantly affect the enzymatic function of Escherichia coli dihydrofolate reductase: Comparison of wild-type protein and active-site mutant D27E2013

    • Author(s)
      E. Ohmae, Y. Miyashita, S. Tate, K. Gekko, S. Kitazawa, R. Kitahara, and K. Kuwajima
    • Journal Title

      Biocim. Biophys. Acta

      Volume: 1834 Issue: 12 Pages: 2782-2794

    • DOI

      10.1016/j.bbapap.2013.09.024

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Vacuum-ultraviolet circular dichroism of Escherichia coli dihydrofolate reductase: Insight into the contribution of tryptophan residues2013

    • Author(s)
      Eiji Ohmae, Koichi Matsuo, Kunihiko Gekko
    • Journal Title

      Chem. Phys. Lett.

      Volume: 572 Pages: 111-114

    • DOI

      10.1016/j.cplett.2013.04.019

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] タンパク質の構造安定性と機能における水和の役割-深海微生物由来酵素の研究からわかること-2013

    • Author(s)
      大前 英司
    • Journal Title

      高圧力の科学と技術

      Volume: 23 Pages: 13-20

    • NAID

      10031156143

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] VUVCD spectra of aromatic and aliphatic amino acids and their derivatives2015

    • Author(s)
      S. Tanaka, E. Ohmae, and K. Matsuo
    • Organizer
      The 19th Hiroshima International Symposium on Synchrotron Radiation
    • Place of Presentation
      東広島市
    • Year and Date
      2015-03-05 – 2015-03-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 1次元NMRによる深海菌ジヒドロ葉酸還元酵素の構造安定性の研究2014

    • Author(s)
      櫻井一正,大前英司,赤坂一之
    • Organizer
      第55回高圧討論会
    • Place of Presentation
      徳島市
    • Year and Date
      2014-11-22 – 2014-11-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] ホタルルシフェラーゼと吸入麻酔薬の相互作用様式の解明2014

    • Author(s)
      西田直哉,大前英司,松木均
    • Organizer
      第55回高圧討論会
    • Place of Presentation
      徳島市
    • Year and Date
      2014-11-22 – 2014-11-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 結晶化タンパク質の円偏光二色性スペクトル測定2014

    • Author(s)
      大前英司,片柳克夫
    • Organizer
      特殊環境微生物セミナー2014
    • Place of Presentation
      名古屋市
    • Year and Date
      2014-10-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高度好塩性古細菌由来ジヒドロ葉酸還元酵素の構造と機能に対する塩の効果2014

    • Author(s)
      宮下由里奈,大前英司,片柳克夫,仲宗根薫
    • Organizer
      特殊環境微生物セミナー2014
    • Place of Presentation
      名古屋市
    • Year and Date
      2014-10-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] ジヒドロ葉酸還元酵素の真空紫外円二色性スペクトルに対する芳香族側鎖の寄与2014

    • Author(s)
      大前英司,田中傑,宮下由里奈,松尾光一
    • Organizer
      特殊環境微生物セミナー2014
    • Place of Presentation
      名古屋市
    • Year and Date
      2014-10-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] ジヒドロ葉酸還元酵素の真空紫外円二色性スペクトルに対する芳香族側鎖の寄与2014

    • Author(s)
      大前英司,田中傑,宮下由里奈,松尾光一
    • Organizer
      日本生物高分子学会2014
    • Place of Presentation
      長野県上田市
    • Year and Date
      2014-09-12 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] タンパク質の真空紫外円二色性スペクトルに対する芳香族側鎖の寄与2014

    • Author(s)
      田中傑,大前英司,松尾光一,月向邦彦
    • Organizer
      日本生物物理学会第6回中国四国支部大会
    • Place of Presentation
      鳥取市
    • Year and Date
      2014-05-17 – 2014-05-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高度好塩性古細菌由来ジヒドロ葉酸還元酵素の構造と機能に対する塩の効果2014

    • Author(s)
      宮下由里奈,大前英司,仲宗根薫,片柳克夫
    • Organizer
      日本生物物理学会第6回中国四国支部大会
    • Place of Presentation
      鳥取市
    • Year and Date
      2014-05-17 – 2014-05-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高度好塩菌由来ジヒドロ葉酸還元酵素の構造と機能に対する塩の効果2013

    • Author(s)
      宮下 由里奈, 大前 英司, 仲宗根 薫, 楯 真一
    • Organizer
      日本生物物理学会第5回中国四国支部大会
    • Place of Presentation
      香川県直島町
    • Related Report
      2013 Research-status Report
  • [Presentation] ジヒドロ葉酸還元酵素の構造及び安定性に対する水和とキャビティーの寄与2013

    • Author(s)
      西田 直哉, 大前 英司, 楯 真一
    • Organizer
      日本生物物理学会第5回中国四国支部大会
    • Place of Presentation
      香川県直島町
    • Related Report
      2013 Research-status Report
  • [Presentation] ジヒドロ葉酸還元酵素の酵素機能に対する溶液条件の効果2013

    • Author(s)
      宮下 由里奈,大前 英司,楯 真一,月向 邦彦,北沢 創一郎,北原 亮,桑島 邦博
    • Organizer
      第18回生物関連高圧研究会シンポジウム
    • Place of Presentation
      岐阜市
    • Related Report
      2013 Research-status Report
  • [Presentation] ジヒドロ葉酸還元酵素の構造及び安定性に対する水和とキャビティーの寄与2013

    • Author(s)
      西田直哉、大前英司、楯真一
    • Organizer
      日本生物高分子学会2013年度大会
    • Place of Presentation
      大阪市
    • Related Report
      2013 Research-status Report
  • [Presentation] 高度好塩性古細菌由来ジヒドロ葉酸還元酵素の構造と機能に対する塩の効果2013

    • Author(s)
      宮下由里奈、大前英司、楯真一、仲宗根薫
    • Organizer
      日本生物高分子学会2013年度大会
    • Place of Presentation
      大阪市
    • Related Report
      2013 Research-status Report
  • [Presentation] ジヒドロ葉酸還元酵素の酵素機能に対する溶液条件の効果2013

    • Author(s)
      大前英司、宮下由里奈、楯真一、月向邦彦、北沢創一郎、北原亮、桑島邦博
    • Organizer
      日本生物高分子学会2013年度大会
    • Place of Presentation
      大阪市
    • Related Report
      2013 Research-status Report
  • [Presentation] ジヒドロ葉酸還元酵素の構造及び安定性に対する水和とキャビティーの寄与2013

    • Author(s)
      西田直哉、大前英司、楯真一
    • Organizer
      特殊環境微生物セミナー2013
    • Place of Presentation
      東広島市
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] ジヒドロ葉酸還元酵素の酵素機能に対する溶液条件の効果2013

    • Author(s)
      大前英司、宮下由里奈、楯真一、月向邦彦、北沢創一郎、北原亮、桑島邦博
    • Organizer
      特殊環境微生物セミナー2013
    • Place of Presentation
      東広島市
    • Related Report
      2013 Research-status Report
  • [Presentation] 高度好塩性古細菌由来ジヒドロ葉酸還元酵素の構造と機能に対する塩の効果2013

    • Author(s)
      宮下由里奈, 大前英司, 楯真一, 仲宗根薫
    • Organizer
      特殊環境微生物セミナー2013
    • Place of Presentation
      東広島市
    • Related Report
      2013 Research-status Report
  • [Presentation] ホタルルシフェラーゼを用いた麻酔薬相互作用様式の解明2013

    • Author(s)
      西田直哉, 大前英司, 松木均
    • Organizer
      特殊環境微生物セミナー2013
    • Place of Presentation
      東広島市
    • Related Report
      2013 Research-status Report
  • [Presentation] ジヒドロ葉酸還元酵素42位変異体の酵素機能に対する塩の効果2012

    • Author(s)
      宮下由里奈, 大前英司, 楯真一
    • Organizer
      日本生物物理学会 第4回 中国四国支部大会
    • Place of Presentation
      山口市
    • Related Report
      2012 Research-status Report
  • [Presentation] Thermodynamic and functional characteristics of deep-sea enzymes.2012

    • Author(s)
      E. Ohmae, C. Murakami, S. Tate, K. Gekko, K. Nakasone, K. Hata, K. Akasaka, and C. Kato
    • Organizer
      Seventh International Conference on High Pressure Bioscience and Biotechnology
    • Place of Presentation
      大津市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] タンパク質の等温圧縮率2012

    • Author(s)
      大前英司、月向邦彦
    • Organizer
      特殊環境微生物セミナー 2012
    • Place of Presentation
      横浜市
    • Related Report
      2012 Research-status Report
  • [Presentation] 深海微生物由来タンパク質の構造安定性に対する水和の寄与2012

    • Author(s)
      日笠山聡, 大前英司, 月向邦彦, 楯真一, 仲宗根薫, 加藤千明
    • Organizer
      特殊環境微生物セミナー 2012
    • Place of Presentation
      横浜市
    • Related Report
      2012 Research-status Report
  • [Presentation] 高度好塩性古細菌Haloarcula japonica P2 DHFRの構造と機能に対する塩の効果2012

    • Author(s)
      宮下由里奈, 大前英司, 楯真一, 仲宗根薫
    • Organizer
      特殊環境微生物セミナー 2012
    • Place of Presentation
      横浜市
    • Related Report
      2012 Research-status Report
  • [Book] Microbial Catalyst 2nd Ed. (Eds. S. M. Abdel-Aziz, N. Garg, A. Aeron, V. K. Gupta, C. K. Jha, and S. C. Nayak),2015

    • Author(s)
      E. Ohmae, Y. Miyashita, and C. Kato
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report
  • [Book] High Pressure Bioscience - Basic Concepts, Applications and Frontiers (Eds. K. Akasaka and H. Matsuki)2015

    • Author(s)
      E. Ohmae, K. Gekko, and C. Kato
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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