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Why the energy transduction efficiency of F1-ATPase so high?

Research Project

Project/Area Number 24570187
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionChuo University

Principal Investigator

MUNEYUKI Eiro  中央大学, 理工学部, 教授 (80219865)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords生体エネルギー変換 / 分子モーター / F1-ATPase / 非平衡 / ATP / 自由エネルギー / 生体エネルギー論 / 変異体
Outline of Final Research Achievements

F1-ATPase is a highly efficient molecular motor. In order to understand the high efficiency, we compared the high efficient wild type motor with a low efficient mutant (beta G158A, T165S, Y341W), which is less sensitive to ADP inhibition and generates less torque. We found that this mutant motor dissipates "heat" in the rotational degree of freedom than wild type. We could achieve a quantitative measurement on the energy transduction by biological molecular motor which must be useful for understanding of energy transduction.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (32 results)

All 2015 2014 2013 2012 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (22 results) (of which Invited: 3 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Single molecule thermodynamics of ATP synthesis by F 1 -ATPase2015

    • Author(s)
      Shoichi Toyabe, Eiro Muneyuki
    • Journal Title

      New Journal of Physics

      Volume: 17 Issue: 1 Pages: 1-7

    • DOI

      10.1088/1367-2630/17/1/015008

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CHARMM Force-fields with Modified Polyphosphate Parameters Allow Stable Simulation of the ATP-Bound Structure of Ca2+-ATPase2014

    • Author(s)
      Yasuaki Komuro, Suyong Re, Chigusa Kobayashi, Eiro Muneyuki and Yuji Sugita
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 10 Issue: 9 Pages: 4133-4142

    • DOI

      10.1021/ct5004143

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Torque generation of Enterococcus hirae V-ATPase2014

    • Author(s)
      Ueno H, Minagawa Y, Hara M, Rahman S, Yamato I, Muneyuki E, Murata T, and Iino R
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 289 Issue: 45 Pages: 31212-31223

    • DOI

      10.1074/jbc.m114.598177

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thermodynamic analyses of nucleotide binding to an isolated monomeric β subunit and the α3β3γ subcomplex of F1-ATPase.2013

    • Author(s)
      Kikuchi, Y., Naka, Y., Osakabe, H., Okamoto, T., Masaike, T., Ueno, H., Toyabe, S., Muneyuki, E.
    • Journal Title

      Biophysical Journal

      Volume: 105 Issue: 11 Pages: 2541-2548

    • DOI

      10.1016/j.bpj.2013.10.018

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase2013

    • Author(s)
      Yoshihiro Minagawa, Hiroshi Ueno, Mayu Hara, Yoshiko Ishizuka-Katsura, Noboru Ohsawa,Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, Ichiro Yamato, Eiro Muneyuki, Hiroyuki Noji, Takeshi Murata, and Ryota Iino
    • Journal Title

      J.Biol.Chem

      Volume: 288 Issue: 45 Pages: 32700-32707

    • DOI

      10.1074/jbc.m113.506329

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Energetics of the presequence-binding poses in mitochondrial protein import through Tom20.2013

    • Author(s)
      Komuro Y, Miyashita N, Mori T, Muneyuki E, Saitoh T, Kohda D, Sugita Y.
    • Journal Title

      J Phys Chem B

      Volume: 117 Issue: 10 Pages: 2864-71

    • DOI

      10.1021/jp400113e

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Properties of the electrogenic activity of bacteriorhodopsin.2013

    • Author(s)
      Miyazaki S, Matsumoto M, Brier SB, Higaki T, Yamada T, Okamoto T, Ueno H, Toyabe S, Muneyuki E.
    • Journal Title

      Eur Biophys J.

      Volume: 42 Issue: 4 Pages: 257-65

    • DOI

      10.1007/s00249-012-0870-0

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 外力存在下のF1-ATPaseの回転観察2015

    • Author(s)
      菊池洋輔,鳥谷部祥一,上野博史,宗行英朗
    • Organizer
      2015年生体運動研究合同班会議
    • Place of Presentation
      東京 学習院大学
    • Year and Date
      2015-01-07 – 2015-01-09
    • Related Report
      2014 Annual Research Report
  • [Presentation] 改良した多リン酸力場を用いた ATP/ADP 結合状態の筋小胞体カルシウムポンプの分子動力学計算2014

    • Author(s)
      小室 靖明, 李 秀栄, 小林 千草, 宗行 英朗, 杉田 有治
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-25 – 2015-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] F1-ATPase のP-loop変異体TF1(βG158A)に対するリン酸の阻害効果2014

    • Author(s)
      星名 仁志, 吉田 光, 伊藤 亜由美, 伊藤 丈太郎, 鳥谷部 祥一, 上野 博史, 宗行 英朗
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleotide binding to TF1 β subunit in relation to the effect of Pi2014

    • Author(s)
      長埜 陸, 小原 清志, 上野 博史, 宗行 英朗
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Rotor-Stator Interactions in V1 and Vo from Enterococcus hirae V-ATPase2014

    • Author(s)
      上野 博史, 皆川 慶嘉, 原 舞雪, 山登 一郎, 野地 博行, 村田 武士, 飯野 亮太, 宗行 英朗
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Observation of the rotation of F1-ATPase under the constant external torque2014

    • Author(s)
      菊池 洋輔, 上野 博史, 中山 隆宏, 宗行 英朗, 鳥谷部 祥一
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] TF1 β;E190D変異体の外部トルク依存性2014

    • Author(s)
      田中 真奈, 河上 知広, 鳥谷部 祥一, 上野 博史, 工藤 正史, 宗行 英朗
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Single molecule study of a molecular motor: from biochemistry to physics2013

    • Author(s)
      Eiro Muneyuki
    • Organizer
      Solvay Workshop on THERMODYNAMICS OF SMALL SYSTEMS
    • Place of Presentation
      Université Libre de Bruxelles
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] F1-ATPaseβサブユニットへのヌクレオチド結合の解析2013

    • Author(s)
      菊池 洋輔、宗行 英朗
    • Organizer
      生体運動研究合同班会議
    • Place of Presentation
      広島大学
    • Related Report
      2013 Research-status Report
  • [Presentation] The relationship between F1-ATPase P-loop mutants and Pi release2013

    • Author(s)
      Hikaru Yoshida, Ayumi Ito, Jotaro Ito, Tomoko Masaike, Takayuki Nishizaka, Shoichi Toyabe, Hiroshi Ueno, Eiro Muneyuki
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Observation of the rotation of F1-ATPase2013

    • Author(s)
      Yohsuke Kikuchi, Takahiro Nakayama, Shoichi Toyabe, Eiroh Muneyuki
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Comparison of the nucleotide binding to the isolated βsubunit and the F1-ATPase using the Sopped-Flow method2013

    • Author(s)
      Riku Nagano, Kiyoshi Obara, Tomoko Masaike, Hiroshi Ueno, Eiro Muneyuki
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Molecular dynamics simulations of SR Ca2+-ATPase using improved ATP force field2013

    • Author(s)
      Yasuaki Komuro, Chigusa Kobayashi, Suyong Re, Eiro Muneyuki, Yuji Sugita
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations2013

    • Author(s)
      Shigehisa Watabe, Suyong Re, Eiro Muneyuki, Yuji Sugita
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] F1-ATPase βサブユニットへのヌクレオチド結合の解析2013

    • Author(s)
      菊池 洋輔、*宗行 英朗
    • Organizer
      2013年 生体運動研究合同班会議
    • Place of Presentation
      広島大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 分子モーター F1-ATPase によるエネルギー変換特性2012

    • Author(s)
      宗行英朗
    • Organizer
      第26回分子シミュレーション討論会
    • Place of Presentation
      九州大学 西新プラザ
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Single molecule energetics of F1-ATPase motor2012

    • Author(s)
      Shoichi Toyabe, TakahiroWatanabe-Nakayama, Hiroshi Ueno, Tetsuaki Okamoto, Hiroshi Taketani, Seishi Kudo, *Eiro Muneyuki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Effect of nucleotide structure on nucleotide binding and rotation of F1-ATPase2012

    • Author(s)
      Yohsuke Kikuchi, Masaike Tomoko, Shoichi Toyabe, Hiroshi Ueno, Eiro Muneyuki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Inhibitory effect of Pi on F1-ATPase P-loop mutant2012

    • Author(s)
      Hikaru Yoshida, Ayumi Ito,Jotaro Ito, Syoichi Toyabe, Hiroshi Ueno, Eiro Muneyuki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Simultaneous observation of fluorescent-nucleotides and rotation of rotary molecular motor on plasmonic metal nanostructures2012

    • Author(s)
      Hiroshi Ueno, Shoichi Toyabe, Eiro Muneyuki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Molecular dynamics simulations of SRCa2+-pump in the ATP bound forms2012

    • Author(s)
      Yasuaki Komuro, Chigusa Kobayashi, Eiro Muneyuki, Yuji Sugita
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Effect of external torque on the rotation of TF1 βE190D mutant2012

    • Author(s)
      Tomohiro Kawakami, Shoici Toyabe, Hiroshi Ueno, Seishi Kudo, Eiro Muneyuki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Book] DOJIN BIOSCIENCE SERIES 17 一分子生物学 (原田 慶恵 石渡 信一 編 )2014

    • Author(s)
      上野博史, 鳥谷部祥一, 宗行英朗
    • Total Pages
      14
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Book] 化学フロンティアシリーズ 23 1分子ナノバイオ計測 (野地博行 編 )2014

    • Author(s)
      鳥谷部祥一,宗行英朗
    • Total Pages
      8
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Remarks] 最近の研究から

    • URL

      http://www.phys.chuo-u.ac.jp/j/muneyuki/?%BA%C7%B6%E1%A4%CE%B8%A6%B5%E6%A4%AB%A4%E9

    • Related Report
      2014 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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