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Intramolecular allosteric interactions in proteins

Research Project

Project/Area Number 24570190
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionNational Institute of Infectious Diseases (2014)
Institute for Molecular Science (2012-2013)

Principal Investigator

TANIO Michikazu  国立感染症研究所, 血液・安全性研究部, 主任研究官 (10416662)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords分子内情報伝達 / タンパク質 / 相互作用 / NMR / 分子内アロステリー / PHドメイン / フィコリン / native PAGE / 分子内アロステリック効果 / 熱安定性
Outline of Final Research Achievements

Spatially separated sites in a protein molecule communicate by intramolecular allosteric interactions, which generally regulate protein activities. To investigate the detailed molecular mechanisms of intramolecular allosteric interactions, the phospholipase C-δ1 (PLC-δ1) pleckstrin homology (PH) domain and M-ficolin are employed as model proteins. By the NMR and Native-PAGE analyses of the PLC-δ1 PH domain, it was found that some side chains in the protein mediate the allosteric interactions, which regulate the ligand-binding activity. As the first step to investigate the intramolecular allosteric interactions in M-ficolin, we assigned the backbone NMR signals of the monomeric M-ficolin recognition domain, suggesting that the secondary structure predicted by the assignments is similar to that of the trimeric protein in the crystal.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2014 2013 2012

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (10 results)

  • [Journal Article] 1H, 13C and 15N backbone resonance assignments of the monomeric human M-ficolin fibrinogen-like domain secreted by Brevibacillus choshinennsis2014

    • Author(s)
      Tanio, M. Kusunoki, H. and Kohno, T
    • Journal Title

      Biomol. NMR Assign.

      Volume: 8 Issue: 1 Pages: 207-211

    • DOI

      10.1007/s12104-013-9484-4

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Intramolecular allosteric interaction in the phospholipase C-δ1 pleckstrin homology domain2013

    • Author(s)
      M.Tanio, K.Nishimura
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1834 Issue: 6 Pages: 1034-1043

    • DOI

      10.1016/j.bbapap.2013.01.034

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Analysis of the phospholipase C-δ1 pleckstrin homology domain using Native polyacrylamide gel electrophoresis2012

    • Author(s)
      M. Tanio, and K. Nishimura
    • Journal Title

      Anal. Biochem

      Volume: 431 Issue: 2 Pages: 106-114

    • DOI

      10.1016/j.ab.2012.09.012

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] PLC-δ1 PHドメインのタンパク質分子内情報伝達2013

    • Author(s)
      谷生道一、西村勝之
    • Organizer
      第40回生体分子科学討論会
    • Place of Presentation
      大阪府 大阪大学銀杏会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Intramolecular allosteric interaction in the phospholipase C-δ1 pleckstrin homology domain2013

    • Author(s)
      谷生道一、西村勝之
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取県 とりぎん文化会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Intramolecular allostery in the PLC-δ1 PH domain2013

    • Author(s)
      谷生道一、西村勝之
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都府 国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Role of tryptophan residues in membrane association of the SWAP-70 PH domain2013

    • Author(s)
      赤井 琴乃, 谷生 道一, 西村 勝之, 辻 暁
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都府 国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] NMR analysis of intramolecular allostery in the PLC-δ1 PH domain2013

    • Author(s)
      谷生道一、西村勝之
    • Organizer
      第52回NMR討論会年会
    • Place of Presentation
      石川県 石川県立音楽堂
    • Related Report
      2013 Research-status Report
  • [Presentation] Preparation of secretory proteins produced by Brevibacillus choshinensis for NMR study2013

    • Author(s)
      谷生道一、楠英樹、河野俊之
    • Organizer
      第52回NMR討論会年会
    • Place of Presentation
      石川県 石川県立音楽堂
    • Related Report
      2013 Research-status Report
  • [Presentation] The short α2-helix of the phospholipase C-δ1 pleckstrin homology domain stabilizes the protein-IP3 interaction2012

    • Author(s)
      Michikazu Tanio, Katsuyuki Nishimura
    • Organizer
      日本蛋白質科学会第12回年会
    • Place of Presentation
      愛知県 名古屋国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] The short α2-helix of the phospholipase C-δ1 pleckstrin homology domain contributes to stable IP3 binding2012

    • Author(s)
      Michikazu Tanio, Katsuyuki Nishimura
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      愛知県 名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] NMR and Native-PAGE analyses of the phospholipase C-δ1 pleckstrin homology domain2012

    • Author(s)
      Michikazu Tanio, Katsuyuki Nishimura
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      愛知県 ウインクあいち
    • Related Report
      2012 Research-status Report
  • [Presentation] Conformational properties of the Def6 PH domain located at the lipid bilayer surface2012

    • Author(s)
      Naomi Tokuda, Michikazu Tanio, Katsuyuki Nishimura, Toshiyuki Kohno, Daisuke Yokogawa, Takahisa Ikegami, Satoru Tuzi,
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      愛知県 名古屋大学
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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