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Detection of single cell epigenetic status using single molecule imaging

Research Project

Project/Area Number 24570191
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

FUJITA Hideaki  独立行政法人理化学研究所, 生命システム研究センター, 客員研究員 (50318804)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords一分子イメージング / ES細胞 / 分化 / Histac / ヒストン / アセチル化 / 蛍光観察 / エピジェネティクス / 一分子観察 / 蛍光イメージング / 筋肉
Outline of Final Research Achievements

Aim of this study is to construct a method to report the epigenetical change using single molecule imaging. I have achieved this by measuring the diffusion property of fluorescent protein within the nucleus, and by using reporter for histone acetylation, Histac.
I found that fluorescent protein dimer change its diffusion dynamics by the differentiation status of the cell. Fluorescent protein dimer show higher diffusion in fully reprogramed iPS than in partially reprogrammed iPS. Modified Histac capable of single molecule imaging was constructed by replacing Venus with photo-activatable GFP. ES cell expressing this modified Histac increased FRET efficiency by treatment with trichostatin A, which shows that this modified Histac is capable of reporting the histone acetylation status.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (23 results)

All 2015 2014 2013 2012

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 2 results) Presentation (12 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Comprehensive chemical secretory measurement of single cells trapped in a micro-droplet array with mass spectrometry2015

    • Author(s)
      Hideaki Fujita, Tsuyoshi Esaki, Tsutomu Masujima, Akitsu Hotta, Soo Hyeon Kim, Hiroyuki Noji, Tomonobu M. Watanabe
    • Journal Title

      RSC Adv.

      Volume: 5 Issue: 22 Pages: 16968-16971

    • DOI

      10.1039/c4ra12021c

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Fluid driving system for a micropump by differentiating iPS cells into cardiomyocytes on a tent-like structure.2015

    • Author(s)
      Tanaka Y., Fujita H.
    • Journal Title

      Sens. Actuators B Chem.

      Volume: 210 Pages: 267-272

    • DOI

      10.1016/j.snb.2014.12.069

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene dynamics of core transcription factors for pluripotency in embryonic stem cells2014

    • Author(s)
      Brit G. David, Kazuko Okamoto, Taishi Kakizuka, Taro Ichimura, Tomonobu M. Watanabe, Hideaki Fujita
    • Journal Title

      J. Biosci. Bioeng

      Volume: 119 Issue: 4 Pages: 406-409

    • DOI

      10.1016/j.jbiosc.2014.09.011

    • NAID

      110009942819

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Four-dimensional spatial nanometry of single particles in living cells using polarized quantum rods2013

    • Author(s)
      Watanabe TM, Fujii F, Jin T, Umemoto E, Miyasaka M, Fujita H, Yanagida T.
    • Journal Title

      Biophys J

      Volume: 105 Issue: 3 Pages: 555-564

    • DOI

      10.1016/j.bpj.2013.07.001

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.2013

    • Author(s)
      Watanabe TM, Imada K, Yoshizawa K, Nishiyama M, Kato C, Abe F, Morikawa TJ, Kinoshita M, Fujita H, Yanagida T.
    • Journal Title

      PLoS One

      Volume: 8 Issue: 8 Pages: e73212-e73212

    • DOI

      10.1371/journal.pone.0073212

    • NAID

      120005328377

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Heart extracellular matrix supports cardiomyocyte differentiation of mouse embryonic stem cells.2013

    • Author(s)
      Higuchi S, Lin Q, Wang J, Lim TK, Joshi SB, Anand GS, Chung MC, Sheetz MP, Fujita H.
    • Journal Title

      J Biosci Bioeng

      Volume: 115(3) Issue: 3 Pages: 320-325

    • DOI

      10.1016/j.jbiosc.2012.10.004

    • NAID

      110009596108

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Chromatin plasticity as a differentiation index during muscle differentiation of C2C12 myoblasts.2012

    • Author(s)
      Tomonobu M. Watanabe et al.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 418 Issue: 4 Pages: 742-747

    • DOI

      10.1016/j.bbrc.2012.01.091

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] p130Cas-dependent actin remodeling regulates myogenic differentiation2012

    • Author(s)
      Kawauchi K, Tan WW, Araki K, Bakar F, Kim M, Fujita H, Hirata H, Sawada Y
    • Journal Title

      Biochemical Journal

      Volume: 445(3) Issue: 3 Pages: 323-332

    • DOI

      10.1042/bj20112169

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Engineering strain-sensitive yellow fluorescent protein.2012

    • Author(s)
      Taro Ichimura et al.
    • Journal Title

      Chemical Communications

      Volume: 48 Issue: 63 Pages: 7871-7873

    • DOI

      10.1039/c2cc32541a

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Distinct modulated pupil function system for real-time imaging of living cells.2012

    • Author(s)
      Tomonobu M Watanabe et al.
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 9 Pages: e44028-e44028

    • DOI

      10.1371/journal.pone.0044028

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] SH3 domain of C-Src regulates its dynamic behaviour in the cell membrane2015

    • Author(s)
      Machiyama H., Yamaguchi T., Watanabe TM., Fujita H.
    • Organizer
      59th Biophysical Society Annual Meeting
    • Place of Presentation
      Baltimore, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Evaluating intracellular crowded with a glycine-inserted mutant fluorescent protein2014

    • Author(s)
      Takamitsu Morikawa, Hiroaki Machiyama, Kazuko Okamoto, Keiko Yoshizawa, Hideaki Fujita, Taro Ichimura, Katsumi Imada, Takaharu Nagai, Tohio Yanagida, Tomonobu Watanabe
    • Organizer
      Biophysical Society Meeting, USA
    • Place of Presentation
      サンフランシスコ・アメリカ合衆国
    • Related Report
      2013 Research-status Report
  • [Presentation] Modeling for T cell-mediated immune regulation2013

    • Author(s)
      Tomoyuki Yamaguchi, Hiroaki Machiyama, Shimon Sakaguchi, Hideaki Fujita
    • Organizer
      日本免疫学会総会
    • Place of Presentation
      幕張メッセ
    • Related Report
      2013 Research-status Report
  • [Presentation] Intracellular measurement of protein-crowding condition by a gene-encoded indicator2013

    • Author(s)
      Takamitsu Morikawa, Keiko Yoshizawa, Hideaki Fujita, Katsumi Imada, Takeharu Nagai, Toshio Yanagida, Tomonobu Watanabe
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Actin filament remodeling in cell-sheet by mechanical stretch2013

    • Author(s)
      Madoka Suzuki, Keiko Kawauchi, Ee Chu Chai, Shota Yamauchi, Shin'ichi Ishiwata, Hideaki Fujita
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Visualization of the molecular-crowding effects in living cell on cellular functions using a FRET-based biosensor2013

    • Author(s)
      Hiroaki Machiyama, Takamitsu Morikawa, Tomoyuki Yamaguchi, Toshio Yanagida, Tomonobu Watanabe, Hideaki Fujita
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Describing the ES cell differentiation pathway using Raman microscopy2013

    • Author(s)
      Taro Ichimura, Liang-da Chiu, Katsumasa Fujita, Satoshi Kawata, Tomonobu M. Watanabe, and Hideaki Fujita
    • Organizer
      EMBO meeting
    • Place of Presentation
      アムステルダム・オランダ
    • Related Report
      2013 Research-status Report
  • [Presentation] 電気刺激による高機能人工筋組織の作製2012

    • Author(s)
      山本泰徳、井藤彰、河邉佳典、藤田英明、長森英二、上平正道
    • Organizer
      日本生物工学会大会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] Change in the nucleus plasticity during C2C12 differentiation measured by fluorescent microscope2012

    • Author(s)
      Watanabe T, Ichimura T, Fujita H
    • Organizer
      The 4th EMBO meeting
    • Place of Presentation
      Nice, France
    • Related Report
      2012 Research-status Report
  • [Presentation] 力を感じて色が変わる蛍光タンパク質の開発2012

    • Author(s)
      市村垂生、藤田英明、慶澤景子、渡邉朋信
    • Organizer
      平成24年度日本分光学会年次講演会
    • Place of Presentation
      東京工業大学
    • Related Report
      2012 Research-status Report
  • [Presentation] ラマン分光顕微鏡を用いて細胞の分化状態を識別する2012

    • Author(s)
      吉田宗生、市村垂生、邱亮達、藤田克昌、渡邉朋信、藤田英明
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Soft substrates are effective in establishment of iPS cells without preparation of feeder cells2012

    • Author(s)
      樋口清香、渡邉朋信、市村垂生、藤田英明
    • Organizer
      The 45th Annual Meeting of JSDB and The 64th Annual Meeting of JSCB
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2012 Research-status Report
  • [Patent(Industrial Property Rights)] 体細胞のリプログラミングを亢進させる方法、及び細胞作製キット2012

    • Inventor(s)
      藤田英明、樋口清香、渡邉朋信
    • Industrial Property Rights Holder
      藤田英明、樋口清香、渡邉朋信
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2012-263735
    • Filing Date
      2012-11-30
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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